Extremophilic and extremotolerant actinomycetes in different soil types

Eurasian Soil Science

Volumn 44, Issue 4, 2011, Pages 417-436

  Zenova, G M ^a   Manucharova, N A ^a   Zvyagintsev, D G ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

DESERT SOIL; ENVIRONMENTAL CONDITIONS; ENVIRONMENTAL FACTOR; PROKARYOTE; SOIL MICROORGANISM; SOIL TYPE; THERMOPHILIC BACTERIUM;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); ACTINOMADURA; BACTERIA (MICROORGANISMS); MICROBISPORA; MICROMONOSPORA; PROKARYOTA; SACCHAROPOLYSPORA; STREPTOMYCES; STREPTOMYCES PRUNICOLOR; STREPTOSPORANGIUM;

EID: 79955395570     PISSN: 10642293     EISSN: None     Source Type: Journal    
DOI: 10.1134/S1064229311040132     Document Type: Article

References (89)

1. N. S. Agre, Taxonomy of Thermophilic Actinomycetes (Pushchino, 1986) [in Russian].
2. Yu. Yu. Berestovskaya, L. V. Vasil'eva, A. V. Polyakova, et al., "Ecology and Biodiversity of Microbial Community in Natural and Technogenic Ecosystems of Northern Russian Regions," in Ecological Problems of Northern Regions and Methods of Their Solution: Proceedings of the International Conference, Apatity, Russia, 2004 (Apatity, 2004), pp. 7-8 [in Russian].
3. G. F. Gauze, T. P. Preobrazhenskaya, M. A. Sveshnikova, et al., Guide to Actinomycetes (Nauka, Moscow, 1983) [in Russian].
4. A. V. Golovchenko, Extended Abstract of Candidate's Dissertation in Biology (Moscow, 1993).
5. T. G. Dobrovol'skaya, Structure of Soil Bacterial Communities (Akademkniga, Moscow, 2002) [in Russian].
6. D. Dorzhgotov, Extended Abstract of Doctoral Dissertation in Biology (Moscow, 1992).
7. F. R. Zaidel'man and A. P. Shvarov, Pyrogenic and Hydrothermal Dehydration of Peat Soils, Their Agroecology, Sandy Agricultural Cultures, and Rehabilitation (Mosk. Gos. Univ., Moscow, 2002) [in Russian].
8. Yu. V. Zakalyukina, G. M. Zenova, and D. G. Zvyagintsev, "Growth and Morphological Differentiation of Acidophilic Actinomycetes," Mikrobiologiya 73(1), 89-93 (2004).
9. Yu. V. Zakalyukina, G. M. Zenova, and D. G. Zvyagintsev, "Soil Acidophilic Actinomycetes," Mikrobiologiya 71(3), 399-403 (2002).
10. D. G. Zvyagintsev, G. M. Zenova, I. I. Sudnitsyn, and E. A. Doroshenko, "The Ability of Soil Actinomycetes to Develop at an Extremely Low Humidity," Dokl. Akad. Nauk 405(5), 702-704 (2005) [Dokl. Biol. Sci. 405 (5), 461-463 (2005)].
11. D. G. Zvyagintsev and G. M. Zenova, Ecology of Actinomycetes (GEOS, Moscow, 2001) [in Russian].
12. D. G. Zvyagintsev and G. M. Zenova, Actinomycetes in Saline and Alkaline Soils (Knizhnyi Dom Universitet, Moscow, 2007) [in Russian].
13. G. M. Zenova, Yu. V. Zakalyukina, V. V. Selyanin, and D. G. Zvyagintsev, "Isolation and Growth of Acidophilic Soil Actinomycetes from the Micromonospora Genus," Pochvovedenie, No. 7, 847-852 (2004) [Eur. Soil Sci. 37 (7), 737-742 (2007)].
14. G. M. Zenova and D. G. Zvyagintsev, Diversity of Actinomycetes in Terrestrial Ecosystems (Mosk. Gos. Univ., Moscow, 2002) [in Russian].
15. G. M. Zenova, N. A. Glushkova, M. V. Bannikov, and A. I. Pozdnyakov, "Actinomycete Complex as an Index of Peat Soil Transformation under the Effect of Agricultural Development and Degradation Processes," Vestn. Mosk. Univ., Ser. 17: pochvoved., No. 4, 25-28 (2006).
16. G. M. Zenova, N. A. Glushkova, M. V. Bannikov, et al., "Actinomycetal Complexes in Drained Peat Soils of the Taiga Zone upon Pyrogenic Succession," Pochvovedenie, No. 4, 441-447 (2008) [Eur. Soil Sci. 41 (4), 394-399 (2008)].
17. G. M. Zenova, V. K. Orleanskii, and E. O. Omarova, "Soil Streptomycetes: The Components of Experimental Algo-Bacterial Cenoses," Pochvovedenie, No. 10, 1251-1255 (2005) [Eur. Soil Sci. 38 (10), 1108-1111 (2005)].
18. L. V. Kalakutskii and N. S. Agre, Development of Actinomycetes (Nauka, Moscow, 1977) [in Russian].
19. P. A. Kozhevin, Microbial Populations in the Nature (Mosk. Gos. Univ., Moscow, 1989) [in Russian].
20. V. V. Selyanin, G. V. Oborotov, G. M. Zenova, and D. G. Zvyagintsev, "Soil Alkalophilic Actinomycetes," Mikrobiologiya 74(6), 838-844 (2005).
21. Biology of the Prokaryotes, Ed. by J. W. Lengler, G. Drews, and H. G. Schlegel (Springer, New York, 1999).
22. S. S. Al-Zarban, I. Abbas, A. A. Al-Musallan, et al., "Nocardiopsis Halotolerans Sp. Nov., Isolated from Salt March Soil in Kuwait," Int. Syst. Evol. Microbiol. 52, 525-529 (2002).
23. S. Antony-Babu, Pathom-aree, S. Nam, et al., "Alkalitolerant Streptomycete Diversity in Littoral and Sand Dune Systems," in The 13th International Symposium on the Biology of Actinomycetes, Melbourne, Australia, 2003 (Melbourne, 2003), p. 23.
24. E. Baldacci, "Contributo alla systematica degli actenomyceti: X-XVI Actinomyces madurae; Proactinomyces ruber; Proactinomyces pseudomadurae; Proactinomyces polychromogenus; Proactinomyces violaceus; Actinomyces coeruleus; con un elencio alfabetico delle specie e delle varieta finora studiate," Atti. Ist. Dot. Univ. Pavia Ser. 3, 139-193 (1944).
25. Bergey's Manual of Systematic Bacteriology, Ed. by S. T. Williams, M. Sharpe, J. A. Holt, et al. (Williams and Wilkins, Baltimore, 1989), Vol. 4.
26. J. Chun, K. S. Bae, T. Y. Moon, et al., "Nocardiopsis kunsanensis sp. Nov., a Moderately Halophilic Actinomycete Isolated from a Saltern," Int. J. Syst. Evol. Microbiol. 50, 1909-1913 (2000).
27. X.-L. Cui, P.-H. Mao, M. Zeng, et al., "Streptimonospora salina Gen. Nov., Sp. Nov., a New Member of the Family Nocardiopsaceae," Int. Syst. Evol. Microbiol. 51, 351-363 (2001).
28. L. I. Evtushenko, V. V. Taran, V. N. Akimov, et al., "Nocardiopsis tropica sp. Nov., Nocardiopsis trehalosi Sp. Nov., Nom. Rev. and Nocardiopsis dassonvillei Subsp. albirubida Supsp. Nov., Comb. Nov," Int. J. Syst. Evol. Microbiol. 50, 73-81 (2000).
29. D. Gardkari, G. Morsdorf, and O. Meyer, "Chemolithoauthotrophic Assimilation of Dinitrogen by Streptomyces thermoautothrophicus UBT 1: Identification of an Unusual N2-Fixing System," J. Bacteriol. 174, 6840-6843 (1992).
30. M. B. Gochnauer, G. G. Leppard, P. Komaratat, et al., "Isolation and Characterization of Actinopolyspora halophila, Gen. et Sp. Nov., an Extremely Halophilic Actinomycete," J. Microbiol. 21, 1500-1511 (1975).
31. M. Goodfellow and S. T. Williams, "Ecology of Actinomycetes," Annu. Rev. Microbiol. 37, 189-216 (1983).
32. M. Goodfellow and S. B. Kim, "Phylogenetic Analysis of Acidophilic and Netrotolerant Actinomycetes Isolated from Soil and Coal Wastes," in The 11th International Symposium on the Biology of Actinomycetes, Heraclion, Greece, 1999.
33. I. Groth, P. Schumann, F. A. Rainey, et al., "Bogoriella caseilytica Gen. Nov., Sp. Nov., a New Alkaliphilic Actinomycete from a Soda Lake in Africa," Int. J. Syst. Bacteriol. 47, 788-794 (1997).
34. C. Hagedorn, "Influence of Soil Acidity on Streptomyces Population in Habitat in Forest Soil," Appl. Environ. Microbiol. 32, 358-375 (1976).
35. J. Q. He, Y. F. Wu, and G. J. Zhang, "Activity and Ecological Distribution of Actinomycetes from Soil in the Southeastern of Tibet," Wei Sheng Wu Xue Bao 46(5), 773-780 (2006).
36. W. N. Hozzein, W. J. Li, M. I. A. Ali, et al., "Nocardiopsis alcaliphila Sp. Nov., a Novel Alkaliphilic Actinomycete Isolated from Desert Soil in Egypt," Int. J. Syst. Evol. Microbiol. 54, 247-252 (2004).
37. C. Jiang and L. Xu, "Actinomycetes Diversity in Unusual Habitats," Actinomycetes 4, 47-57 (1993).
38. X. Jin, L. H. Xu, P. H. Mao, et al., "Description of Saccharomonospora xijiangensis Sp. Nov. Based on Chemical and Molecular Classification," Int. J. Syst. Bacterial. 48, 1095-1099 (1998).
39. P. Kampfer, F. A. Rainey, M. A. Andersson, et al., "Frigoribacterium Faeni Gen. Nov., Sp. Nov., a Novel Psychrophilic Genus of the Family Micromonosporaceae," Int. J. Syst. Evol. Microbiol. No. 1, 355-363 (2000).
40. M. R. Khan and S. T. Williams, "Studies on the Ecology of Actinomycetes in Soil: VIII. Distribution and Characteristics of Acidophilic Actinomycetes," Soil Biol. Biochem. 7, 345-349 (1975).
41. S. B. Kim, Ch. Falconer, E. Williams, and M. Goodfellow, "Streptomyces thermocarboxydovorans Sp. Nov. and Streptomyces thermocarboxydus Sp. Nov., Two Moderately Thermophilic Carboxydotrophic Species from Soil," Int. J. Syst. Bacteriol. 48, 59-68 (1998).
42. S. B. Kim, C. N. Seong, S. J. Jeon, et al., "Taxonomic Study of Neutrotolerant Acidophilic Actinomycetes Isolated from Soil and Description of Streptomyces yeochonensis Sp. Nov," Int. J. Syst. Evol. Microbiol. 54, 211-214 (2004).
43. R. M. Kroppenstedt and L. I. Evtushenko, The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, Ed. by M. Dvorkin, S. Falkow, E. Rosenberg, K. H. Schleifer, and E. Stackebrandt (Springer, New York, 2004).
44. B. Kumar, P. Trivedi, Mishra A. Kumar, et al., "Microbial Diversity of Soil from Two Hot Springs in Uttaranchal Himalaya," Microbiol. Res. 159(2), 141-146 (2004).
45. W. J. Li, S. K. Tang, E. Stackebrandt, et al., "Saccharomonospora paurometabolica Sp. Nov., a Moderate Halophilic Actinomycete Isolated from Soil in China," Int. J. Syst. Evol. Microbiol. 53, 1591-1594 (2003).
46. W. J. Li, P. Xu, S. K. Tang, et al., "Prauserella halophila Sp. Nov. and Prauserella alba Sp. Nov., Moderately Halophilic Actinomycetes from Saline Soil," Int. J. Syst. Evol. Microbiol. 53, 1545-1549 (2003).
47. W. J. Li, P. Xu, L. P. Zhang, S. K. Tang, et al., "Streptomonospora alba Sp. Nov., a Novel Halophilic Actinomycete, and Amended Description of the Genus Streptomonospora Cui et al. 2001," Int. J. Syst. Evol. Microbiol. 53, 1421-1425 (2003).
48. M. G. Li, W. J. Li, P. Xu, et al., "Nocardiopsis xinjiangensis Sp. Nov., a Halophilic Actinomycete Isolated from a Saline Soil Sample in China," Int. J. Syst. Evol. Microbiol. 53, 317-321 (2003d).
49. W. J. Li, S. K. Park, S. K. Tank, et al., "Nocardiopsis salina Sp. Nov., a Novel Halophilic Actinomycete Isolated from Saline Soil in China," Int. J. System. Evol. Microbiol. 54(5), 1805-1809 (2004).
50. W. J. Li, Y. G. Zhang, Y. Q. Zhang, et al., "Streptomycetes sodiiphilus Sp. Nov., a Novel Alkaliphilic Actinomycete," Int. J. Syst. Evol. Microbiol. 55, 1329-1333 (2005).
51. D. A. Lipson and S. K. Schmidt, "Seasonal Changes in Alpine Soil Bacterial Community in the Colorado Rocky Mountains," Appl. Environ. Microbiol. 70(5), 2867-2879 (2004).
52. L. A. Maldonado, W. Fenical, P. R. Jensen, et al., "Salinispora arenicola Gen. Nov., Obligate Marina Actinomycetes Belonging to the Family Micromonosporaceae," Int. J. Syst. Evol. Microbiol. 55, 1759-1766 (2005).
53. M. R. Mannisto and M. M. Haggblom, "Characterization of Psychrotolerant Heterotrophic Bacteria from Finnish Lapland," Syst. Appl. Microbiol. 29(3), 229-272 (2000).
54. U. Mevs, E. Stackebrant, P. Schuman, et al., "Modestobacter multifepatus Gen. Nov., Sp. Nov., a Budding Actinomycete from Soil of the Asgard Range (Transantarctic Mountains)," Int. J. Syst. Evol. Microbiol. 50(1), 337-373 (2000).
55. I. Meyer, "Nocardiopsis, a New Genus of the Order Actinomycetales," Int. J. System. Bacteriol. 26, 487-493 (1976).
56. Y. Mikami, K. Miyashita, and T. Arai, "Diaminopimelic Acid Profiles of Alkalophilic and Alkaline - Resistant Actinomycetes," J. Gen. Microbiol. 128, 1709-1712 (1982).
57. Y. Mikami, K. Miyashita, and T. Arai, "Alkaliphilic Actinomycetes," Actinomycetes 19, 176-191 (1986).
58. K. Miyashita, Y. Mikami, and T. Arai, "Alkalophilic Actinomycete, Nocardiopsis dassonvillei Subsp. prasina Subsp. Nov., Isolated from Soil," Int. J. Syst. Bacteriol. 34, 405-409 (1984).
59. Y. Nakajima, V. Kitpreechevanich, K. Suzuki, and T. Kudo, "Microbispora coralline Sp. Nov., a New Species of Genus Microbispora Isolated from Thai Soil," Int. J. Syst. Evol. Microbiol. 49, 1761-1767 (1999).
60. R. M. Niemi, S. Knuth, and K. Lundstrom, "Actinomycetes and Fungi in Surface Waters and in Potable Water," Appl. Environ. Microbiol. 42(2), 378-388 (1982).
61. I. Nioh, M. Osada, T. Yamamura, and K. Muramatsu, "Acidophilic and Acidotolerant Actinomycetes in an Acid Tea Field Soil," J. Gen. Appl. Microbiol. 41(2), 175-180 (1995).
62. E. O. Omarova, A. M. Kurapova, V. K. Orleansky, et al., "Actinomycetes and Cyanobacteria as Part of Aquatic Communities of Alternately Drying Lakes in the Crimea," in Abstracts of the International Scientific Conference "Aquatic Ecology at the Dawn of the XX1 Century," St. Petersburg, Russia, 2005 (St. Petersburg, 2005), p. 68.
63. Y. H. Park, D. G. Yim, E. Kim, et al., "Classification of Acidophilic, Neutrotolerant, and Neutrophilic Streptomyces by Nucleotide Sequencing of 5s Ribosomal RNA," J. Gen. Microbiol. 137, 2265-2269 (1991).
64. V. Prabahar, "Pseudonocardia antarctica Sp. Nov., an Actinomycete from McMurdo Dry Valleys, Antarctica," Syst. Appl. Microbiol. 27, 66-71 (2004).
65. H. Prauser, Actinomycetes: The Boundary Microorganisms, Ed. by T. Arai (Toppan, Tokyo, 1976), pp. 193-207.
66. H. Prauser, "Nocardioides, a New Genus of the Order Actinomycetales," Int. J. Syst. Bacteriol. 26, 58-65 (1976).
67. J. C. Priscu, E. E. Adams, W. B. Lions, et al., "Geomicrobiology of Subglacial Icarctica," Science 286, 2141-2144 (1999).
68. M. Sato, T. Beppu, and K. Arima, "Studies on Antibiotics Produced at High Alkaline pH," Agric. Biol. Chem. 47, 2019-2027 (1983).
69. J. Song, H. V. Weon, S. H. Yoon, et al., "Polygenetic Diversity of Thermophilic Actinomycetes and Thermoactinomyces Spp. Isolated from Mushroom Composites in Korea Based on 16 S rRNA Gene Sequence Analysis," FEMS Microbiol. Lett. 202(1), 97-102 (2001).
70. E. Stackebrandt, F. A. Rainey, and N. L. Ward-Rainey, "Proposal for a New Hierarchic Classification System, Actinobacteria Classic Nov.," Int. J. Syst. Bacteriol. 47(2), 479-491 (1997).
71. W. A. Taber, "Evidence for the Existence of Acid-Sensitive Actinomycetes in Soil," Can. J. Microbiol. 6, 534-544 (1960).
72. G. Y. A. Tan, S. Robinson, E. Lacey, and M. Goodfellow, "Amycolatopsis australiensis Sp. Nov., an Actonomycete Isolated from Aridic Soils," Int. J. Syst. Evol. Microbiol. 56, 2297-2301 (2006).
73. S. K. Tang, W. J. Li, W. Dong, et al., "Studies of the Biological Characteristics of Some Halophilic and Halotolerant Actinomycetes Isolated from Saline and Alkaline Soils," Actinomycetologica 17, 6-10 (2003).
74. The Prokaryotes (Springer, New York, 2006).
75. M. N. Thormann, S. E. Bayley, and R. S. Currah, "Microcosm Tests of the Effect of Temperature and Microbial Species Number on the Decomposition of Carex aquatilis and Sphagnum fuscum Litter from Southern Boreal Peatlands," Can. J. Microbiol. 50, 793-802 (2004).
76. H. D. Tresner, J. S. Yayes, and E. Y. Backus, "Differential Tolerance of Streptomycetes to Sodium Chloride as a Taxonomic Tool," Appl. Microbiol. 16, 1134-1136 (1968).
77. K. Tsuchiya, I. Ikeda, T. Tsuchiya, and T. Kimura, "Cloning and Expression of an Intracellular Alkaline Protease Gene from Alkalophilic Thermoactinomyces Sp. HS682," Biosci. Biotechnol. Biochem. 61, 298-303 (1997).
78. A. Ventosa, J. J. Nieto, and A. Oren, "Biology of Moderately Halophilic Aerobic Bacteria," Microbiol. Mol. Biol. Rev. 62, 504-544 (1998).
79. N. Wael, W. N. Hozzein, W. J. Li, et al., "Nocardiopsis alkaliphila Sp. Nov., a Novel Alkaliphilic Actinomycete Isolated from Desert Soil in Egypt," Int. J. Syst. Evol. Microbiol. 54, 247-252 (2004).
80. L. Wang and J. S. Ruan, "Classification of Actinomycetes Isolated from Saline-Alkaline Soils," in ISBA 94, International Symposium on the Biology of Actinomycetes, Moscow, Russia, 1994 (Moscow, 1994), p. 238.
81. Y. M. Wang, G. M. Cao, W. B. Jiang, and Y. S. Zhang, "Study on Actinomycetes Population of Alpine Meadow Soil in Qinghai," Wei Sheng Wu Xue Bao 44(6), 733-736 (2004).
82. Y. M. Wang, Y. S. Zhang, X. L. Xu, et al., "Actinopolymorpha singaporensis Gen. Nov., Sp., Nov., a Novel Actinomycete from the Tropical Rainforest of Singapore," Int. J. Syst. Evol. Microbiol. 51, 467-473 (2001).
83. S. T. Williams, F. L. Davies, C. I. Mayfield, and M. R. Khan, "Studies on the Ecology of Actinomycetes in Soil: 11. The pH-Requirements of Streptomycetes from Two Acid Soils," Soil Biol. Biochem. 3, 187-199 (1971).
84. L. Xu, Q. Li, and C. Jiang, "Diversity of Soil Actinomycetes in Yunnan, China," Appl. Environ. Microbiol. 62(1), 244-248 (1996).
85. C. Yallop, C. Edwards, and S. T. Williams, "Isolation and Growth Physiology of Novel Thermoactinomycetes," J. Appl. Microbiol. 83(6), 685-692 (1997).
86. J. H. Yoon, C. H. Lee, and T. K. Oh, "Nicardioides debius Sp. Nov. Isolated from an Alkaline Soil," Int. J. Evol. Microbiol. 55, 2209-2212 (2005).
87. J. H. Yoon, C. H. Lee, and T. K. Oh, "Nicardioides lentus Sp. Nov. Isolated from an Alkaline Soil," Int. J. Evol. Microbiol. 56, 271-275 (2006).
88. K. Yoshida, A. Iguchi, M. Mukaisako, et al., JP Patent 151196, 1979.
89. D. Y. Yum, H. C. Chung, D. H. Bai, et al., "Purification and Characterization of Alkaline Serine Protease from an Alkalophilic Streptomyces Sp." Biosci. Biotechnol. Biochem. 58, 470-474 (1994).