Colwellia chukchiensis sp. nov., a psychrotolerant bacterium isolated from the arctic ocean

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 4, 2011, Pages 850-853

  Yu, Yong ^a   Li, Hui Rong ^a   Zeng, Yin Xin ^a  

^a POLAR RESEARCH INSTITUTE OF CHINA   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; FATTY ACID; GENOMIC DNA; QUINONE DERIVATIVE; RNA 16S; SEA WATER;

ARCTIC; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM ISOLATION; COLWELLIA AESTUARII; COLWELLIA CHUKCHIENSIS; COLWELLIA POLARIS; CONCENTRATION (PARAMETERS); GENE SEQUENCE; GRAM NEGATIVE ANAEROBIC BACTERIA; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

ALTEROMONADACEAE; ANAEROBIOSIS; ARCTIC REGIONS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; COLD TEMPERATURE; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OCEANS AND SEAS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); COLWELLIA; COLWELLIA AESTUARII; NEGIBACTERIA;

EID: 79955379461     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.022111-0     Document Type: Article

References (25)

1. Bowman, J. P., Gosink, J. J., McCammon, S. A., Lewis, T. E., Nichols, D. S., Nichols, P. D., Skerratt, J. H., Staley, J. T. & McMeekin, T. A. (1998). Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22: 6v3). Int J Syst Bacteriol 48, 1171-1180.
2. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
3. Choi, E. J., Kwon, H. C., Koh, H. Y., Kim, Y. S. & Yang, H. O. (2010). Colwellia asteriadis sp. nov., a marine bacterium isolated from the starfish Asterias amurensis. Int J Syst Evol Microbiol 60, 1952-1957.
4. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Deming, J. W., Somers, L. K., Straube, W. L., Swartz, D. G. & MacDonell, M. T. (1988). Isolation of an obligately barophilic bacterium and description of a new genus, Colwellia gen. nov. Syst Appl Microbiol 10, 152-160.
8. Dong, X.-Z. & Cai, M.-Y. (2001). Manual for the Sysstematic Identification of General Bacteria, pp. 370-398. Beijing: Science Press (in Chinese).
9. Felsenstein, J. (2009). PHYLIP (phylogeny inference package) version 3.69. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
10. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
11. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
12. Jung, S.-Y., Oh, T.-K. & Yoon, J.-H. (2006). Colwellia aestuarii sp. nov., isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 56, 33-37.
13. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
14. Nogi, Y., Hosoya, S., Kato, C. & Horikoshi, K. (2004). Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench. Int J Syst Evol Microbiol 54, 1627-1631.
15. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
16. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
17. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
18. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
21. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
22. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology [English translation of Microbiology (Beijing)] 16, 176-178.
23. Yumoto, I., Kawasaki, K., Iwata, H., Matsuyama, H. & Okuyama, H. (1998). Assignment of Vibrio sp. strain ABE-1 to Colwellia maris sp. nov., a new psychrophilic bacterium. Int J Syst Bacteriol 48, 1357-1362.
24. Zhang, D.-C., Yu, Y., Xin, Y.-H., Liu, H.-C., Zhou, P.-J. & Zhou, Y.-G. (2008). Colwellia polaris sp. nov., a psychrotolerant bacterium isolated from Arctic sea ice. Int J Syst Evol Microbiol 58, 1931-1934.
25. Zhang, L., Wang, Y., Dai, J., Tang, Y., Yang, Q., Luo, X. & Fang, C. X. (2009). Bacillus korlensis sp. nov., a moderately halotolerant bacterium isolated from a sand soil sample in China. Int J Syst Evol Microbiol 59, 1787-1792.