Molecular epidemiology of foot-and-mouth disease virus serotypes A and O with emphasis on Korean isolates: Temporal and spatial dynamics

Archives of Virology

Volumn 156, Issue 5, 2011, Pages 817-826

  Yoon, Sook Hee ^a   Lee, Kwang Nyeong ^a,b   Park, Jong Hyeon ^b   Kim, Heebal ^a  

^a Seoul National University   (South Korea)

^b Animal Plant and Fisheries Quarantine and Inspection Agency   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; VP1 PROTEIN, FOOT AND MOUTH DISEASE VIRUS; VP1 PROTEIN, FOOT-AND-MOUTH DISEASE VIRUS;

ANIMAL; ARTICLE; CATTLE; CATTLE DISEASE; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FOOT AND MOUTH DISEASE; FOOT AND MOUTH DISEASE VIRUS; GENETIC SELECTION; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MOLECULAR EPIDEMIOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGEOGRAPHY; SOUTH KOREA; SWINE; SWINE DISEASE; TIME; VIROLOGY;

ANIMALS; CAPSID PROTEINS; CATTLE; CATTLE DISEASES; CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; GENOTYPE; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGEOGRAPHY; REPUBLIC OF KOREA; SELECTION, GENETIC; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES; TIME FACTORS;

FOOT-AND-MOUTH DISEASE VIRUS;

EID: 79955151842     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-011-0921-3     Document Type: Article

References (41)

1. Domingo E, Baranowski E, Escarmis C, Sobrino F (2002) Foot and-mouth disease virus. Comp Immunol Microbiol Infect Dis 25: 297-308.
2. Sobrino F, Saiz M, Jimenez-Clavero MA, Nunez JI, Rosas MF, Baranowski E, Ley V (2001) Foot-and-mouth disease virus: a long known virus, but a current threat. Vet Res 32: 1-30.
3. Melo EC, López A (2002) Control of foot and mouth disease: the experience of the Americas. Rev Sci Tech Off Int Epiz 21: 695-698.
4. Beck E, Strohmaier K (1987) Subtyping of European foot-and-mouth disease virus strains by nucleotide sequence determination. J Virol 61: 1621-1629.
5. Tosh C, Hemadri D, Sanyal A, Bandyopadhyay SK (2003) Genetic and antigenic analysis of two recently circulating genotypes of type A foot-and-mouth disease virus in India: evidence for positive selection in the capsid-coding genes. Arch Virol 148: 853-869.
6. König GA, Palma EL, Maradei E, Piccone ME (2007) Molecular epidemiology of foot-and-mouth disease virus types A and O isolated in Argentina during the 2000-2002 epizootic. Vet Microbiol 124: 1-15.
7. Mohapatra JK, Priyadarshini P, Pandey L, Subramaniam S, Sanyal A, Hemadri D, Pattnaik B (2009) Analysis of the leader proteinase (L(pro)) region of type A foot-and-mouth disease virus with due emphasis on phylogeny and evolution of the emerging VP3(59)-deletion lineage from India. Virus Res 141: 34-46.
8. Schumann KR, Knowles NJ, Davies PR, Midgley RJ, Valarcher JF, Raoufi AQ, McKenna TS, Hurtle W, Burans JP, Martin BM, Rodriguez LL, Beckham TR (2008) Genetic characterization and molecular epidemiology of foot-and-mouth disease viruses isolated from Afghanistan in 2003-2005. Virus Genes 36: 401-413.
9. Tully DC, Fares MA (2008) The tale of a modern animal plague: tracing the evolutionary history and determining the time-scale for foot and mouth disease virus. Virology 382: 250-256.
10. Shin JH, Sohn HJ, Choi KS, Kwon BJ, Ko YJ, An DJ, Cha SH, Park JH, Jeong WS, Park JY, Choi CU, Kweon CH, Song JY, Kim JY, An SH, Kim SJ, Joo YS (2003) Molecular epidemiological investigation of foot-and-mouth disease virus in Korea in 2000. J Vet Med Sci 65: 9-16.
11. Oem JK, Lee KN, Cho IS, Kye SJ, Park JH, Joo YS (2004) Comparison and analysis of the complete nucleotide sequence of foot-and-mouth disease viruses from animals in Korea and other Panasia strains. Virus Genes 29: 63-71.
12. Oem JK, Lee KN, Cho IS, Kye SJ, Park JY, Park JH, Kim YJ, Joo YS, Song HJ (2005) Identification antigenic site analysis of foot-and-mouth disease virus from pigs and cattle in Korea. J Vet Sci 6: 117-124.
13. Oem JK, Yeh MT, McKenna TS, Hayes JR, Rieder E, Giuffre AC, Robida JM, Lee KN, Cho IS, Fang X, Joo YS, Park JH (2008) Pathogenic characteristics of the Korean 2002 isolate of foot-and-mouth disease virus serotype O in pigs and cattle. J Comp Pathol 138: 204-214.
14. Park JH, Kim SJ, Oem JK, Lee KN, Kim YJ, Kye SJ, Park JY, Joo YS (2006) Enhanced immune response with foot and mouth disease virus VP1 and interleukin-1 fusion genes. J Vet Sci 7: 257-262.
15. Heo EJ, Lee HS, Jeoung HY, Ko HR, Kweon CH, Ko YJ (2010) Development of a blocking ELISA using a recombinant glycoprotein for the detection of antibodies to vesicular stomatitis New Jersey virus. J Virol Methods 164: 96-100.
16. Ko YJ, Lee HS, Jeoung HY, Heo EJ, Ko HR, Chang BS, Joo HD, Gerelmaa U, Dashzeveg B, Tserendorj S, Sodnomdarjaa R, Park JH, Kweon CH, Cho IS, Paik SG (2010) Use of a baculovirus-expressed structural protein for the detection of antibodies to foot-and-mouth disease virus type A by a blocking enzyme-linked immunosorbent assay. Clin Vaccine Immunol 17: 194-198.
17. Hall TA (1999) BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acid Symp Ser 41: 95-98.
18. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
19. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal-windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res 22: 4673-4680.
20. Suyama M, Torrents D, Bork P (2006) PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acid Res 34: W609-W612.
21. Nielsen R, Yang Z (1998) Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 48: 929-936.
22. Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-556.
23. Martin DP, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
24. Martin D, Rybicki E (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
25. Padidam M, Sawyer S, Fauquet CM (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265: 218-225.
26. Smith JM (1992) Analyzing the mosaic structure of genes. J Mol Evol 34: 126-129.
27. Martin DP, Posada D, Crandall KA, Williamson C (2005) A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses 21: 98-102.
28. Posada D, Crandall KA (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci USA 98: 13757-13762.
29. Gibbs MJ, Armstrong JS, Gibbs AJ (2000) Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16: 573-582.
30. Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
31. Drummond AJ, Ho SY, Phillips MJ, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Bio 4: e88. doi: 10. 1371/journal. pbio. 0040088.
32. Suchard MA, Weiss RE, Sinsheimer JS (2001) Bayesian selection of continuous-time Markov chain evolutionary models. Mol Biol Evol 18: 1001-1013.
33. Rambaut A (2006) Available at http://evolve. zoo. ox. ac. uk/beast.
34. Batschelet E, Domingo E, Weissmann C (1976) The proportion of revertant and mutant phage in a growing population, as a function of mutation and growth rate. Gene 1: 27-32.
35. Drake JW, Holland JJ (1999) Mutation rates among RNA viruses. Proc Natl Acad Sci USA 96: 13910-13913.
36. Carrillo C, Tulman ER, Delhon G, Lu Z, Carreno A, Vagnozzi A, Kutish GF, Rock DL (2005) Comparative genomics of foot-and-mouth disease virus. J Virol 79: 6487-6504.
37. Tully DC, Fares MA (2006) Unravelling selection shifts among foot-and-mouth disease virus (FMDV) serotypes. Evol Bioinform 2: 237-251.
38. Lewis-Rogers N, McClellan DA, Crandall KA (2008) The evolution of foot-and-mouth disease virus: impacts of recombination and selection. Infect Genet Evol 8: 786-798.
39. Cooke JN, Westover KM (2008) Serotype-specific differences in antigenic regions of foot-and-mouth disease virus (FMDV): a comprehensive statistical analysis. Infect Genet Evol 8: 855-863.
40. Valarcher J-F, Leforban Y, Rweyemamu M, Rweywmamu M, Roeder PL, Gerbier G, Mackay DKJ, Sumption KJ, Paton DJ, Knowles NJ (2008) Incursions of foot-and-mouth disease virus into Europe between 1985 and 2006. Transbound Emerg Dis 55: 14-34.
41. Sutmoller P, Barteling SS, Casas-Olascoaga R, Sumption KJ (2003) Control and eradication of foot-and-mouth disease. Virus Res 91: 101-144.