Network models: An underutilized tool in wildlife epidemiology?

Interdisciplinary Perspectives on Infectious Diseases

Volumn 2011, Issue , 2011, Pages

  Craft, Meggan E ^a   Caillaud, Damien ^b  

^a UNIVERSITY OF GLASGOW   (United Kingdom)

^b UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL BEHAVIOR; BAYES THEOREM; BLOOD SAMPLING; DISEASE SURVEILLANCE; DISEASE TRANSMISSION; EPIDEMIC; EPIDEMIOLOGICAL DATA; GENOTYPE; HOST PATHOGEN INTERACTION; HUMAN; INCIDENCE; INFECTION; MALARIA; MATHEMATICAL MODEL; NONHUMAN; POISSON DISTRIBUTION; POPULATION DENSITY; POPULATION DISTRIBUTION; POPULATION DYNAMICS; POPULATION MODEL; POPULATION SIZE; PRIORITY JOURNAL; REVIEW; SAMPLE SIZE; SEROLOGY; SEXUAL TRANSMISSION; SIMULATION; STOCHASTIC MODEL; SURVIVAL RATE; TELEMETRY; TUBERCULOSIS; VACCINATION; WILDLIFE;

EID: 79955125835     PISSN: 1687708X     EISSN: 16877098     Source Type: Journal    
DOI: 10.1155/2011/676949     Document Type: Review

References (88)

1. Keeling M. J., Rohani P., Modeling Infectious Diseases in Humans and Animals 2008 Princeton, NJ, USA Princeton University Press
2. Meyers L. A., Pourbohloul B., Newman M. E. J., Skowronski D. M., Brunham R. C., Network theory and SARS: predicting outbreak diversity Journal of Theoretical Biology 2005 232 1 71 81 (Pubitemid 39388375)
3. Lloyd-Smith J. O., Schreiber S. J., Kopp P. E., Getz W. M., Superspreading and the effect of individual variation on disease emergence Nature 2005 438 7066 355 359 (Pubitemid 41643951)
4. Craft M. E., Volz E., Packer C., Meyers L. A., Disease transmission in territorial populations: the small-world network of Serengeti lions. Journal of the Royal Society Interface. In press
5. Erdos P., Renyi A., On random graphs Publicationes Mathematicae 1959 6 290 297
6. Barabsi A. L., Albert R., Emergence of scaling in random networks Science 1999 286 5439 509 512
7. Pourbohloul B., Meyers L. A., Skowronski D. M., Krajden M., Patrick D. M., Brunham R. C., Modeling control strategies of respiratory pathogens Emerging Infectious Diseases 2005 11 8 1249 1256 (Pubitemid 41045334)
8. Bansal S., Pourbohloul B., Meyers L. A., A comparative analysis of influenza vaccination programs PLoS Medicine 2006 3 10, article e387 1816 1825 (Pubitemid 44721820)
9. Keeling M. J., Eames K. T. D., Networks and epidemic models Journal of the Royal Society Interface 2005 2 4 295 307
10. Ginsberg J., Mohebbi M. H., Patel R. S., Brammer L., Smolinski M. S., Brilliant L., Detecting influenza epidemics using search engine query data Nature 2009 457 7232 1012 1014
11. King D. A., Peckham C., Waage J. K., Brownlie J., Woolhouse M. E. J., Infectious diseases: preparing for the future Science 2006 313 5792 1392 1393 (Pubitemid 44360255)
12. Wey T., Blumstein D. T., Shen W., Jordn F., Social network analysis of animal behaviour: a promising tool for the study of sociality Animal Behaviour 2008 75 2 333 344
13. Krause J., Croft D. P., James R., Social network theory in the behavioural sciences: potential applications Behavioral Ecology and Sociobiology 2007 62 1 15 27 (Pubitemid 47568640)
14. McCallum H., Six degrees of Apodemus separation Journal of Animal Ecology 2009 78 5 891 893
15. Leu S. T., Kappeler P. M., Bull C. M., Refuge sharing network predicts ectoparasite load in a lizard Behavioral Ecology and Sociobiology 2010 64 1495 1503
16. Drewe J. A., Who infects whom? Social networks and tuberculosis transmission in wild meerkats Proceedings of the Royal Society B 2010 277 1681 633 642
17. Craft M. E., Volz E., Packer C., Meyers L. A., Distinguishing epidemic waves from disease spillover in a wildlife population Proceedings of the Royal Society B 2009 276 1663 1777 1785
18. Altmann J., Observational study of behavior: sampling methods Behaviour 1974 49 3-4 227 267
19. de Menezes M. A., Baird R. W., Lusseau D., Guimares P., Guimares P. R., dos Reis S. F., Vulnerability of a killer whale social network to disease outbreaks Physical Review E 2007 76 4
20. Richomme C., Gauthier D., Fromont E., Contact rates and exposure to inter-species disease transmission in mountain ungulates Epidemiology and Infection 2006 134 1 21 30 (Pubitemid 43103525)
21. Prange S., Jordan T., Hunter C., Gehrt S. D., New radiocollars for the detection of proximity among individuals Wildlife Society Bulletin 2006 34 5 1333 1344 (Pubitemid 46213315)
22. Guttridge T. L., Gruber S. H., Krause J., Sims D. W., Novel acoustic technology for studying free-ranging shark social behaviour by recording individuals' interactions PLoS ONE 2010 5 2
23. Clay C. A., Lehmer E. M., Previtali A., St. Jeor S., Dearing M. D., Contact heterogeneity in deer mice: implications for Sin Nombre virus transmission Proceedings of the Royal Society B 2009 276 1660 1305 1312
24. Hamede R. K., Bashford J., McCallum H., Jones M., Contact networks in a wild Tasmanian devil (Sarcophilus harrisii) population: using social network analysis to reveal seasonal variability in social behaviour and its implications for transmission of devil facial tumour disease Ecology Letters 2009 12 11 1147 1157
25. Ji W., White P. C. L., Clout M. N., Contact rates between possums revealed by proximity data loggers Journal of Applied Ecology 2005 42 3 595 604 (Pubitemid 40885685)
26. Bhm M., Hutchings M. R., White P. C. L., Contact networks in a wildlife-livestock host community: identifying high-risk individuals in the transmission of bovine TB among badgers and cattle PLoS ONE 2009 4 4
27. Perkins S. E., Cagnacci F., Stradiotto A., Arnoldi D., Hudson P. J., Comparison of social networks derived from ecological data: implications for inferring infectious disease dynamics Journal of Animal Ecology 2009 78 5 1015 1022
28. Porphyre T., Stevenson M., Jackson R., McKenzie J., Influence of contact heterogeneity on TB reproduction ratio R in a free-living brushtail possum Trichosurus vulpecula population Veterinary Research 2008 39 3, article 31
29. Godfrey S. S., Bull C. M., James R., Murray K., Network structure and parasite transmission in a group living lizard, the gidgee skink, Egernia stokesii Behavioral Ecology and Sociobiology 2009 63 7 1045 1056
30. Lebreton J. D., Burnham K. P., Clobert J., Anderson D. R., Modeling survival and testing biological hypotheses using marked animals: a unified approach with case studies Ecological Monographs 1992 62 1 67 118
31. Pollock K. H., Nichols J. D., Brownie C., Hines J. E., Statistical inference for capture-recapture experiments Wildlife Monographs 1990 107 3 97
32. Corner L. A. L., Pfeiffer D. U., Morris R. S., Social-network analysis of Mycobacterium bovis transmission among captive brushtail possums (Trichosurus vulpecula) Preventive Veterinary Medicine 2003 59 3 147 167 (Pubitemid 36770476)
33. Naug D., Structure of the social network and its influence on transmission dynamics in a honeybee colony Behavioral Ecology and Sociobiology 2008 62 11 1719 1725
34. Ramsey D., Spencer N., Caley P., Efford M., Hansen K., Lam M., Cooper D., The effects of reducing population density on contact rates between brushtail possums: implications for transmission of bovine tuberculosis Journal of Applied Ecology 2002 39 5 806 818
35. Gompper M. E., Wright A. N., Altered prevalence of raccoon roundworm (Baylisascaris procyonis) owing to manipulated contact rates of hosts Journal of Zoology 2005 266 2 215 219 (Pubitemid 40802178)
36. Cross P. C., Lloyd-Smith J. O., Bowers J. A., Hay C. T., Hofmeyr M., Getz W. M., Integrating association data and disease dynamics in a social ungulate: bovine tuberculosis in African buffalo in the Kruger National Park Annales Zoologici Fennici 2004 41 6 879 892 (Pubitemid 40113093)
37. Vicente J., Delahay R. J., Walker N. J., Cheeseman C. L., Social organization and movement influence the incidence of bovine tuberculosis in an undisturbed high-density badger Meles meles population Journal of Animal Ecology 2007 76 2 348 360
38. Bluff L. A., Rutz C., A quick guide to video-tracking birds Biology Letters 2008 4 4 319 322 (Pubitemid 351961465)
39. Otterstatter M. C., Thomson J. D., Contact networks and transmission of an intestinal pathogen in bumble bee (Bombus impatiens) colonies Oecologia 2007 154 2 411 421 (Pubitemid 350077126)
40. Sharma S., Couturier S., Ct S. D., Impacts of climate change on the seasonal distribution of migratory caribou Global Change Biology 2009 15 10 2549 2562
41. Holdo R. M., Holt R. D., Fryxell J. M., Opposing rainfall and plant nutritional gradients best explain the wildebeest migration in the serengeti The American Naturalist 2009 173 4 431 445
42. Rappole J. H., Derrickson S. R., Hublek Z., Migratory birds and spread of West Nile virus in the Western Hemisphere Emerging Infectious Diseases 2000 6 4 319 328 (Pubitemid 30643651)
43. Brower L. P., Understanding and misunderstanding the migration of the monarch butterfly (Nymphalidae) in North America: 18571995 Journal- Lepidopterists' Society 1995 49 4 304 385 (Pubitemid 26476763)
44. Sterck E. H. M., Watts D. P., van Schaik C. P., The evolution of female social relationships in nonhuman primates Behavioral Ecology and Sociobiology 1997 41 5 291 309 (Pubitemid 27523423)
45. Smith J. E., Kolowski J. M., Graham K. E., Dawes S. E., Holekamp K. E., Social and ecological determinants of fission-fusion dynamics in the spotted hyaena Animal Behaviour 2008 76 3 619 636
46. Lehmann J., Boesch C., To fission or to fusion: effect of community size on wild chimpanzee (Pan troglodytes versus) social organisation Behavioral Ecology and Sociobiology 2004 56 3 207 216 (Pubitemid 38958546)
47. Connor R. C., Wells R., Mann J., Read A., Mann J., Connor R., Tyack P., Whitehead H., The bottlenose dolphin: social relationships in a fission-fusion society Cetacean Societies: Field Studies of Whales and Dolphins 2000 Chicago, Ill, USA University of Chicago Press 91 126
48. Wittemyer G., Douglas-Hamilton I., Getz W. M., The socioecology of elephants: analysis of the processes creating multitiered social structures Animal Behaviour 2005 69 6 1357 1371 (Pubitemid 40793443)
49. Schaller G. B., The Serengeti Lion; A Study of Predator-Prey Relations 1972 Chicago, Ill, USA University of Chicago Press
50. Croft D. P., Krause J., James R., Social networks in the guppy (Poecilia reticulata) Proceedings of the Royal Society B 2004 271 6 S516 S519
51. Volz E., Meyers L. A., Epidemic thresholds in dynamic contact networks Journal of the Royal Society Interface 2009 6 32 233 241
52. Cleaveland S., Packer C., Hampson K., Sinclair A. R. E., Mduma S., Fryxell J., The multiple roles of infectious diseases in the Serengeti ecosystem Serengeti III: Human Impacts on Ecosystem Dynamics 2008 Chicago, Ill, USA Chicago University Press 209 239
53. Lembo T., Hampson K., Haydon D. T., Craft M., Dobson A., Dushoff J., Ernest E., Hoare R., Kaare M., Mlengeya T., Mentzel C., Cleaveland S., Exploring reservoir dynamics: a case study of rabies in the Serengeti ecosystem Journal of Applied Ecology 2008 45 4 1246 1257 (Pubitemid 351951818)
54. Caillaud D., Levrro F., Cristescu R., Gatti S., Dewas M., Douadi M., Gautier-Hion A., Raymond M., Mnard N., Gorilla susceptibility to Ebola virus: the cost of sociality Current Biology 2006 16 13 R489 R491
55. Roelke-Parker M. E., Munson L., Packer C., Kock R., Cleaveland S., Carpenter M., O'Brien S. J., Pospischil A., Hofman-Lehmann R., Lutz H., Mwamengele G. L. M., Mgasa M. N., Machange G. A., Summers B. A., Appel M. J. G., A canine distemper virus epidemic in Serengeti lions (Panthera leo) Nature 1996 379 6564 441 445 (Pubitemid 26039522)
56. Packer C., Altizer S., Appel M., Brown E., Martenson J., O'Brien S. J., Roelke-Parker M., Hofmann-Lehmann R., Lutz H., Viruses of the Serengeti: patterns of infection and mortality in African lions Journal of Animal Ecology 1999 68 6 1161 1178
57. Cleaveland S., Mlengeya T., Kaare M., Haydon D., Lembo T., Laurenson M. K., Packer C., The conservation relevance of epidemiological research into carnivore viral diseases in the Serengeti Conservation Biology 2007 21 3 612 622 (Pubitemid 46802218)
58. Santiago M. L., Lukasik M., Kamenya S., Li Y., Bibollet-Ruche F., Bailes E., Muller M. N., Emery M., Goldenberg D. A., Lwanga J. S., Ayouba A., Nerrienet E., McClure H. M., Heeney J. L., Watts D. P., Pusey A. E., Collins D. A., Wrangham R. W., Goodall J., Brookfield J. F. Y., Sharp P. M., Shaw G. M., Hahn B. H., Foci of endemic simian immunodeficiency virus infection in wild-living eastern chimpanzees (Pan troglodytes schweinfurthii) Journal of Virology 2003 77 13 7545 7562 (Pubitemid 36734525)
59. Prugnolle F., Durand P., Neel C., Ollomo B., Ayala F. J., Arnathau C., Etienne L., Mpoudi-Ngole E., Nkoghe D., Leroy E., Delaporte E., Peeters M., Renaud F., African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum Proceedings of the National Academy of Sciences of the United States of America 2010 107 4 1458 1463
60. Craft M. E., Hawthorne P. L., Packer C., Dobson A. P., Dynamics of a multihost pathogen in a carnivore community Journal of Animal Ecology 2008 77 6 1257 1264
61. Delahay R. J., Smith G. C., Hutchings M. R., Management of Disease in Wild Mammals 2009 New York, NY, USA Springer
62. Cross M. L., Buddle B. M., Aldwell F. E., The potential of oral vaccines for disease control in wildlife species The Veterinary Journal 2007 174 3 472 480 (Pubitemid 350082696)
63. Haydon D. T., Randall D. A., Matthews L., Knobel D. L., Tallents L. A., Gravenor M. B., Williams S. D., Pollinger J. P., Cleaveland S., Woolhouse M. E. J., Sillero-Zubiri C., Marino J., Macdonald D. W., Laurenson M. K., Low-coverage vaccination strategies for the conservation of endangered species Nature 2006 443 7112 692 695 (Pubitemid 44564711)
64. Rwego I. B., Isabirye-Basuta G., Gillespie T. R., Goldberg T. L., Gastrointestinal bacterial transmission among humans, mountain gorillas, and livestock in Bwindi Impenetrable National Park, Uganda Conservation Biology 2008 22 6 1600 1607
65. Kndgen S., Khl H., N'Goran P. K., Walsh P. D., Schenk S., Ernst N., Biek R., Formenty P., Mtz-Rensing K., Schweiger B., Junglen S., Ellerbrok H., Nitsche A., Briese T., Lipkin W. I., Pauli G., Boesch C., Leendertz F. H., Pandemic human viruses cause decline of endangered great apes Current Biology 2008 18 4 260 264
66. Osofsky S. A., Cleaveland S., Karesh W. B., Conservation and Development Interventions at the Wildlife/Livestock Interface: Implications for Wildlife, Livestock, and Human Health 2005 Gland, Switzerland IUCN
67. Caughley G., Pech R., Grice D., Effect of fertility control on a population's productivity Wildlife Research 1992 19 6 623 627 (Pubitemid 24409035)
68. Davis S., Trapman P., Leirs H., Begon M., Heesterbeek J. A. P., The abundance threshold for plague as a critical percolation phenomenon Nature 2008 454 7204 634 637
69. Salkeld D. J., Salath M., Stapp P., Jones J. H., Plague outbreaks in prairie dog populations explained by percolation thresholds of alternate host abundance Proceedings of the National Academy of Sciences of the United States of America 2010 107 32 14247 14250
70. Kuehl H. S., Elzner C., Moebius Y., Boesch C., Walsh P. D., The price of play: self-organized infant mortality cycles in chimpanzees PLoS ONE 2008 3 6
71. Tompkins D. M., Dunn A. M., Smith M. J., Telfer S., Wildlife diseases: from individuals to ecosystems Journal of Animal Ecology 2011 80 1 19 38
72. Newman M. E. J., Spread of epidemic disease on networks Physical Review E 2002 66 1 11
73. Newman M. E. J., Strogatz S. H., Watts D. J., Random graphs with arbitrary degree distributions and their applications Physical Review E 2001 64 2 7
74. Meyers L. A., Newman M. E. J., Pourbohloul B., Predicting epidemics on directed contact networks Journal of Theoretical Biology 2006 240 3 400 418
75. Choquet R., Reboulet A. M., Pradel R., Gimenez O., Lebreton J. D., M-SURGE: new software specifically designed for multistate capture-recapture models Animal Biodiversity and Conservation 2004 27 1 207 215 (Pubitemid 40958912)
76. White G. C., Burnham K. P., Program MARK: survival estimation from populations of marked animals Bird Study 1999 46 S120 S139
77. Batagelj V., Mrvar A. P., Jnger M., Mutzel P., Analysis and visualization of large networks Graph Drawing Software 2003 Berlin, Germany Springer 77 103
78. Csardi G., Nepusz T., The igraph software package for complex network research InterJournal Complex Systems 2006 2006 1695
79. Handcock M. S., Hunter D. R., Butts C. T., Goodreau S. M., Morris M., statnet: software tools for the representation, visualization, analysis and simulation of network data Journal of Statistical Software 2008 24 1 1548 7660
80. Butts C. T., network: a package for managing relational data in R Journal of Statistical Software 2008 24 2
81. Bansal S., Khandelwal S., Meyers L. A., Exploring biological network structure with clustered random networks BMC Bioinformatics 2009 10, article 405
82. Wilensky U., NetLogo: Center for Connected Learning and Computer-Based Modeling 1999 Evanston, Ill, USA Northwestern University
83. R Development Core Team, R: A Language and Environment for Statistical Computing 2010 Vienna, Austria R Foundation for Statistical Computing
84. Toni T., Welch D., Strelkowa N., Ipsen A., Stumpf M. P. H., Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems Journal of the Royal Society Interface 2009 6 1 187 202
85. Wegmann D., Leuenberger C., Excoffier L., Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood Genetics 2009 182 4 1207 1218
86. Leuenberger C., Wegmann D., Bayesian computation and model selection without likelihoods Genetics 2010 184 1 243 252
87. Hagan H., Thiede H., Des Jarlais D. C., Hepatitis C virus infection among injection drug users: survival analysis of time to seroconversion Epidemiology 2004 15 5 543 549 (Pubitemid 40416907)
88. Haydon D. T., Cross-disciplinary demands of multihost pathogens Journal of Animal Ecology 2008 77 6 1079 1081