Late Miocene diversification of the genus Hydrochus (Coleoptera, Hydrochidae) in the west Mediterranean area

Molecular Phylogenetics and Evolution

Volumn 59, Issue 2, 2011, Pages 377-385

  Hidalgo Galiana, Amparo ^a,b   Ribera, Ignacio ^a,b  

^a INSTITUTE OF EVOLUTIONARY BIOLOGY CSIC UNIVERSITAT POMPEU FABRA   (Spain)

^b MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

Author keywords

Biogeography; Coleoptera; Diversification; Hydrochus; Mediterranean; Speciation

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BEETLE; BIOLOGICAL MODEL; CLASSIFICATION; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SOUTHERN EUROPE; SPECIES DIFFERENTIATION;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; BEETLES; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENETIC SPECIATION; MEDITERRANEAN REGION; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

COLEOPTERA; HYDROCHIDAE; HYDROCHUS; HYDROPHILOIDEA;

EID: 79955108209     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.01.018     Document Type: Article

References (65)

1. Angus R.B. A re-evaluation of the taxonomy and distribution of some European species of Hydrochus Leach (Col. Hydrophilidae). Entomol. Mon. Mag. 1976, 112:177-202.
2. Barraclough T.G., Hogan J.E., Vogler A.P. Testing whether ecological factors promote cladogenesis in a group of tiger beetles (Coleoptera: Cicindelidae). Proc. R. Soc. B. 1999, 266:1061-1067.
3. Barraclough T.G., Nee S. Phylogenetics and speciation. Trends Ecol. Evol. 2001, 16:391-399.
4. Barrier, E., Vrielynck, B., 2008. MEBE Atlas of Palaeotectonic maps of the Middle East. Commission for the Geological Map of the World.
5. Bennas N., Abellán P., Sánchez-Fernández D., Millán A. Hydrochus cf Obtusicollis Fairmaire, 1877 (Coléoptéra, Hydrochidae), un coleoptere aquatique du Rif marocain hautement menacé. Bol. Soc. Ent. Aragon. 2007, 40:491-495.
6. Bernhard D., Ribera I., Komarek A., Beutel R.G. Phylogenetic analysis of Hydrophiloidea (Coleoptera: Polyphaga) based on molecular data and morphological characters of adults and immature stages. Insect Syst. Evol. 2009, 40:3-41.
7. Blondel J., Aronson J. Biology and Wildlife of the Mediterranean Region 1999, Oxford University Press, Oxford.
8. Braga J.C., Martín J.M., Quesada C. Patterns and average rates of late Neogene-recent uplift of the Betic cordillera, SE Spain. Geomorphology 2003, 50:3-26.
9. Brower A.V.Z. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial-DNA evolution. Proc. Natl. Acad. Sci. USA 1994, 91:6491-6495.
10. Bruch A.A., Utescher T., Mosbrugger V., Gabrielyan I., Ivanov D.A. Late Miocene climate in the circum-Alpine realm-a quantitative analysis of terrestrial palaeofloras. Palaeogeogr. Palaeoclimatol. Palaeoecol. 2007, 238:1-4.
11. Charlesworth B. Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation. Nat. Rev., Genet. 2009, 10:195-205.
12. Crivelli A.J., Maitland P.S. Endemic freshwater fishes of the northern mediterranean region. Biol. Conserv. 1995, 72:121-122.
13. Dercourt J., Zonenshain L.P., Ricou L.C. Présentation des 9 cartes paléogéographiques au 1=20 000 000 s'étendant de l'Atlantique au Pamir pour la période du Lias a' l'Actuel. Bull. Soc. Geol. Fr. 1985, 8:637-652.
14. Drummond A.J., Rambaut A. Beast: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
15. Fery H., Brancucci M. A taxonomic revision of Deronectes Sharp, 1882 (Insecta: Coleoptera: Dytiscidae) (part i). Ann. Nat. Mus. Wien, B 1997, 99:217-302.
16. Fery H., Hosseinie S. A taxonomic revision of Deronectes Sharp, 1882 (Insecta: Coleoptera: Dytiscidae) (part ii). Ann. Nat. Mus. Wien, B 1998, 100:219-290.
17. Golubchik T., Wise M.J., Easteal S., Jermiin L.S. Mind the gaps: evidence of bias in estimates of multiple sequence alignments. Mol. Biol. Evol. 2007, 24:2433-2442.
18. Harvey P.H., May R.M., Nee S. Phylogenies without fossils. Evolution 1994, 48:523-529.
19. Hansen, M., 1987. The Hydrophiloidea (Coleoptera) of Fennoscandia and Denmark. Fauna Entomologica Scandinavica 18, Stenstrup.
20. Hansen M. World Catalogue of Insects, Vol. 2: Hydrophiloidea (Coleoptera) 1999, Apollo Books, Stenstrup.
21. Hansen M. Hydrochidae. Catalogue of Palaearctic Coleoptera 2004, vol. 2:42-43. Apollo Books, Stenstrup.
22. Hewitt G. The genetic legacy of the Quaternary ice ages. Nature 2000, 405:907-913.
23. Hidalgo-Galiana A., Jäch A.M., Ribera I. Hydrochus farsicus sp.n. from Iran and notes on other Palearctic species of the genus (Coleoptera: Hydrophiloidea: Hydrochidae). Zootaxa 2010, 2344:61-64.
24. Jäch M.A. Taxonomic revision of the Palaearctic species of the genus Limnebius Leach, 1815 (Coleoptera: Hydraenidae). Koleopterol. Rundsch. 1993, 63:99-187.
25. Jäch M.A. Annotated checklist of aquatic and riparian/littoral beetle families of the world (Coleoptera). Water Beetles of China 1998, vol. 2:25-42. Zoologisch-Botanische Gesellschaft and Wiener Coleopterologenverein, Wien.
26. Jolivet L., Augier R., Robin C., Suc J.P., Rouchy J.M. Lithospheric-scale geodynamic context of the Messinian salinity crisis. Sediment. Geol. 2006, 188:9-33.
27. Kass R.E., Raftery A.E. Bayes Factors. J. Amer. Stat. Assoc. 1995, 90:773-795.
28. Katoh K., Misawa K., Kuma K., Miyata T. Mafft: A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30:3059-3066.
29. Löbl I., Smetana A. Catalogue of Palaearctic Coleoptera: Hydrophiloidea - Histeroidea - Staphylinoidea, vol. 2 2004, Apollo Books, Stenstrup.
30. Mart A., Incekara U., Polat A., Karaca H. Hydrochus ibericus and Hydrochus nodulifer, two new records for the Hydrochidae (Coleoptera) fauna of Turkey. Turk. J. Zool. 2009, 33:249-250.
31. Médail F., Quézel P. Biodiversity hotspots in the Mediterranean Basin: Setting global conservation priorities. Conserv. Biol. 1999, 13:1510-1513.
32. Médail F., Diadema K. Glacial refugia influence plant diversity patterns in the Mediterranean Basin. J. Biogeogr. 2009, 36:1333-1345.
33. Miller K.B., Bergsten J., Whiting M.F. Phylogeny and classification of the tribe Hydaticini (Coleoptera: Dytiscidae): partition choice for Bayesian analysis with multiple nuclear and mitochondrial protein-coding genes. Zool. Script. 2009, 38:591-615.
34. Monaghan M.T., Inward D.J.G., Hunt T., Vogler A.P. A molecular phylogenetic analysis of the Scarabaeinae (dung beetles). Mol. Phylogenet. Evol. 2007, 45:674-692.
35. Murienne J., Karaman I., Giribet G. Explosive evolution of an ancient group of Cyphophthalmi (Arachnida: Opiliones) in the Balkan Peninsula. J. Biogeogr. 2010, 37:90-102.
36. Myers N., Mittermeier R.A., Mittermeier C.G., Da Fonseca G.A.B., Kent J. Biodiversity hotspots for conservation priorities. Nature 2000, 403:853-858.
37. Nee S., Holmes E.C., May R.M., Harvey P.H. Extinction rates can be estimated from molecular phylogenies. Philos. T. Roy. Soc. B. 1994, 344:77-82.
38. Oosterbroek P., Arntzen J.W. Area-cladograms of Circum-Mediterranean taxa in relation to Mediterranean palaeogeography. J. Biogeogr. 1992, 19:3-20.
39. Pagel M., Meade A. A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Syst. Biol. 2004, 53:571-581.
40. Papadopoulou A., Anastasiou I., Vogler A.P. Revisiting the insect mitochondrial molecular clock: the Mid-Aegean Trench calibration. Mol. Biol. Evol. 2010, 27:1659-1672.
41. Paradis E., Claude J., Strimmer K. Ape: Analyses of phylogenetics and evolution in R language. Bioinformatics 2004, 20:289-290.
42. Petit R.J., Aguinagalde I., de Beaulieu J.L., Bittkau C., Brewer S., Cheddadi R., Ennos R., Fineschi S., Grivet D., Lascoux M., Mohanty A., Müller-Starck G., Demesure-Musch B., Palmé A., Martín J.P., Rendell S., Vendramin G.G. Glacial refugia: hotspots but not melting pots of genetic diversity. Science 2003, 300:1563-1565.
43. Popov S.V., Shcherba I.G., Ilyna L.B., Nevesskaya L.A., Paramonova N.P., Khondkarian S.O., Magyar I. Late Miocene to Pliocene palaeogeography of the Paratethys and its relation to the Mediterranean. Palaeogeogr. Palaeoclimatol. Palaeoecol. 2006, 238:91-106.
44. Posada D., Crandall K.A. Modeltest: Testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
45. Pybus O.G., Rambaut A. Genie: estimating demographic history from molecular phylogenies. Bioinformatics 2002, 18:1404-1405.
46. Pybus O.G., Harvey P.H. Testing macro-evolutionary models using incomplete molecular phylogenies. Proc. R. Soc. B. 2000, 267:2267-2272.
47. Quental T.B., Marshall C.R. Extinction during evolutionary radiations: reconciling the fossil record with molecular phylogenies. Evolution 2009, 63:3158-3167.
48. Rabosky D.L. Laser: a maximum likelihood toolkit for detecting temporal shifts in diversification rates from molecular phylogenies. Evol. Bioinform. Online 2006, 2:257-260.
49. Ribera I. Are Iberian endemics Iberian? a case study using water beetles of family Dytiscidae (Coleoptera). Graellsia 2003, 13:179-193.
50. Ribera I., Castro A., Díaz-Pazos J.A., Garrido J., Izquierdo A., Jäch M.A., Valladares L.F. The geography of speciation in narrow range endemics of the " Haenydra" lineage (Coleoptera, Hydraenidae, Hydraena). J. Biogeogr. 2011, 38:502-516.
51. Ribera I., Castro A., Hernando C. Ochthebius (Enicocerus) aguilerai sp.n. from central Spain, with a molecular phylogeny of the Western Palaearctic species of Enicocerus (Coleoptera, Hydraenidae). Zootaxa 2010, 2351:1-13.
52. Ribera I., Faille A. A new microphthalmic stygobitic Graptodytes Seidlitz from Morocco, with a molecular phylogeny of the genus (Coleoptera, Dytiscidae). Zootaxa 2010, 2641:1-14.
53. Ribera I., Fresneda J., Bucur R., Izquierdo A., Vogler A.P., Salgado J.M., Cieslak A. Ancient origin of a Western Mediterranean radiation of subterranean beetles. BMC Evol. Biol. 2010, 10:29.
54. Ribera I., Hernando C., Aguilera P. Hydrochus tariqi sp.n. from south Spain (Coleoptera: Hydrochidae). Koleopterol Rundsch 1999, 69:99-102.
55. Ribera I., Vogler A.P. Speciation of Iberian diving beetles in Pleistocene refugia (Coleoptera, Dytiscidae). Mol. Ecol. 2004, 13:179-193.
56. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
57. Sanmartín I. Dispersal vs. Vicariance in the Mediterranean: historical biogeography of the Palearctic Pachydeminae (Coleoptera, Scarabaeoidea). J. Biogeogr. 2003, 30:1883-1897.
58. Schmitt T. Molecular biogeography of Europe: Pleistocene cycles and postglacial trends. Front. Zool. 2007, 4:11.
59. Shatrovskij, A.G., 1993. On new and little known hydrophilids of the genus Hydrochus Leach (Coleoptera, Hydrophilidae). Entomol. Obozr. 72, pp. 827-829 (in Russian).
60. Short A.E.Z., Hebauer F. World catalogue of Hydrophiloidea - additions and corrections, 1 (1999-2005) (Coleoptera). Koleopterol. Rundsch. 2006, 76:315-359.
61. Shull V.L., Vogler A.P., Baker M.D., Maddison D.R., Hammond P.M. Sequence alignment of 18S ribosomal RNA and the basal relationships of Adephagan beetles: evidence for monophyly of aquatic families and the placement of Trachypachidae. Syst. Biol. 2001, 50:945-969.
62. Simon C., Frati F., Beckenbach A., Crespi B., Liu H., Flook P. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annu. Rev. Entomol. 1994, 87:651-701.
63. Smetana A. Review of the family Hydrophilidae of Canada and Alaska (Coleoptera). Mem. Entomol. Soc. Can. 1988, 142:1-316.
64. Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol. 2008, 57:758-771.
65. Tzedakis P.C. Museums and cradles of Mediterranean biodiversity. J. Biogeogr. 2009, 36:1033-1034.