Ancient origin of a Western Mediterranean radiation of subterranean beetles

BMC Evolutionary Biology

Volumn 10, Issue 1, 2010, Pages

  Ribera, Ignacio ^a,b   Fresneda, Javier ^c   Bucur, Ruxandra ^d,e   Izquierdo, Ana ^a   Vogler, Alfried P ^d,e   Salgado, Jose M ^f   Cieslak, Alexandra ^a  

^a MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

^b INSTITUTE OF EVOLUTIONARY BIOLOGY CSIC UNIVERSITAT POMPEU FABRA   (Spain)

^c Ca de Massa   (Spain)

^d DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^e IMPERIAL COLLEGE LONDON   (United Kingdom)

^f Universidad de Leán   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BEETLE; BIOGEOGRAPHY; CAVE; DISPERSAL; DIVERGENCE; GEOLOGICAL RECORD; MICROPLATE; MIOCENE; MOUNTAIN REGION; OLIGOCENE; PHYLOGENETICS; RADIATION EXPOSURE; SUBTERRANEAN ENVIRONMENT;

IBERIAN PENINSULA;

CHOLEVINAE; COLEOPTERA; LEIODIDAE;

ANIMAL; ARTICLE; BEETLE; CLASSIFICATION; ECOSYSTEM; GENETICS; PHYLOGENY; SOUTHERN EUROPE;

ANIMALS; BEETLES; ECOSYSTEM; MEDITERRANEAN REGION; PHYLOGENY;

EID: 77649278375     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-29     Document Type: Article

References (74)

1. The ecology of adaptive radiations. D Schluter, Oxford, UK: Oxford University Press 2000
2. Speciation. J Coyne HA Orr, Sunderland, MA: Sinauer Associates 2004
3. La biologie des animaux cavernicoles. A Vandel, Paris: Gauthier-Villars 1964
4. The Biology of Caves and Other Subterranean Habitats. DC Culver T Pipan, Oxford, UK: Oxford University Press 2009
5. The Origin of Species. C Darwin, London: John Murray 1859
6. Cave Life: Evolution and Ecology. DC Culver, Cambridge, MA: Harvard University Press 1982
7. Philosophie zoologique, ou exposition des considérations relatives l'histoire naturelle des animaux. JB Lamarck, Paris: Museum d'Histoire Naturelle, Paris 1809 1
8. Monographie des Bathysciinae. R Jeannel, Arch Zool exp gen, Paris 1924 63 1 436
9. Recherches sur les Coléoptères troglobies de la sous-famille des Bathysciinae. S Deleurance, Ann Sci nat, Paris (Zool) ser 12 1963 1 5 1 172
10. Milieu souterrain et ecophysiologie de la reproduction et du developpement des coléoptères Bathysciinae hypoges. B Delay, Mém Biospél 1978 1 349
11. Antennal thermal receptors of the cave beetle, Speophyes lucidulus Delar. 2. Cold receptor response to slowly changing temperature. G Corbiere-Tichane R Loftus, J Comp Physiol 1983 153 3 343 351 10.1007/BF00612588
12. Evolution of subterranean diving beetles (Coleoptera: Dytiscidae: Hydroporini, Bidessini) in the arid zone of Australia. R Leys CHS Watts SJB Cooper WF Humphreys, Evolution 2003 57 2819 2834 14761060
13. A molecular test for cryptic diversity in ground water: how large are the ranges of macro-stygobionts? P Trontelj CJ Douady C Fiser J Gibert S Goricki T Lefebure B Sket V Zaksek, Freshw Biol 2009 54 727 744 10.1111/j.1365-2427.2007. 01877.x
14. The limits of cryptic diversity in groundwater: phylogeography of the cave shrimp Troglocaris anophthalmus (Crustacea: Decapoda: Atyidae). V Zaksek B Sket S Gottstein D Franjevic P Trontelj, Mol Ecol 2009 18 931 946 10.1111/j.1365-294X.2008.04061.x
15. Speciation in cave faunas. TC Barr JR Holsinger, Annu Rev Ecol Syst 1985 16 313 337 10.1146/annurev.es.16.110185.001525
16. The evolution towards troglobitic life: a phylogenetic reappraisal of climatic relict and local habitat shift hypothesis. L Desutter-Grandcolas P Grandcolas, Mém Biospéol 1996 23 57 63
17. Survival, opportunism and convenience in the processes of cave colonization by terrestrial faunas. X Belles, Oecol Aquat 1992 10 1991 325 335
18. Galapagos islands troglobits: the question of tropical troglobits, parapatric distributions and eyed sister-species, and their origin by parapatric speciation. SB Peck TL Finston, Mém Biospél 1993 20 19 37
19. The Zoogeography of specialized cave animals: a bioclimatic model. F Howarth, Evolution 1980 34 394 406 10.2307/2407402
20. The evolution of non-relictual tropical troglobites. F Howarth, Int J Speleol 1987 16 1 16
21. Coléoptères (généralités et synthèse). V Decu C Juberthie, Encyclopædia Biospeologica II Société de Biospéologie, Juberthie C, Decu V, 1998 II 1025 1030
22. A molecular phylogeny shows the single origin of the Pyrenean subterranean Trechini ground beetles (Coleoptera: Carabidae). A Faille I Ribera L Deharveng C Bourdeau L Garnery E Quéinnec T Deuve, Mol Phylogen Evol 2010 54 97 106 10.1016/j.ympev.2009.10.008
23. Catalogue des Coléoptères Leiodidae et Platypsyllinae. M Perreau, Mém Soc ent Fr 2000 4 1 460
24. Phylogenetic problems, current classification and generic catalog of world Leiodidae (including Cholevidae). AF Newton, Phylogeny and evolution of subterranean and endogean Cholevidae (= Leiodidae, Cholevinae) Proceedings of XX International Congress of Entomology, Firenze, 1996 Torino: Atti Museo Regionale di Scienze Naturali, Giachino PM, Peck SB, 1998 41 178
25. Phylogeny of western Mediterranean Leptodirini, with an emphasis on genital characters (Coleoptera: Leiodidae: Cholevinae). J Fresneda JM Salgado I Ribera, Syst Ent 2007 32 332 358 10.1111/j.1365-3113.2006.00366.x
26. Major questions in the phylogeny and biogeography of Cholevidae (Coleoptera), with emphasis on the subfamily Leptodirinae. PM Giachino D Vailati A Casale, Phylogeny and evolution of subterranean and endogean Cholevidae (= Leiodidae, Cholevinae) Proceedings of XX International Congress of Entomology, Firenze, 1996 Torino: Atti Museo Regionale di Scienze Naturali, Giachino PM, Peck SB, 1998 179 209
27. Families and subfamilies of Coleoptera (with selected genera, notes, references and data on family-group names). JF Lawrence AF Newton, Biology, phylogeny, and classification of coleoptera: papers celebrating the 80th birthay of Roy A Crowson Varsovia: Museum i Instytut Zoologii PAN, Pakaluk J, Slipinski SA, 1995 779 1006
28. La genèse des faunes terrestres. Eléments de biogéographie. R Jeannel, Paris: Presses Universitaires de France 1942
29. Molecular biogeography of cave life: A study using mitochondrial DNA from Bathysciine beetles. A Caccone V Sbordoni, Evolution 2001 55 122 130 11263733
30. Fauna Iberica. Vol. 31: Coleoptera: Cholevidae. JM Salgado M Blas J Fresneda, Madrid: CSIC 2008
31. Leiodidae Fleming, 1821. AF Newton, Handbook of Zoology Vol IV, Arthropoda: Insecta; Coleoptera, Vol I, Morphology and Systematics (Archostemata, Adephaga, Myxophaga, Polyphaga partim) Berlin, New York: De Gruyter, Beutel RG, Leschen RAB, 2005 261 280
32. Sequence alignment of 18S ribosomal RNA and the basal relationships of Adephagan beetles: evidence for monophyly of aquatic families and the placement of Trachypachidae. VL Shull AP Vogler MD Baker DR Maddison PM Hammond, Syst Biol 2001 50 945 969 10.1080/106351501753462894 12116642
33. Discovery of Aspidytidae, a new family of aquatic Coleoptera. I Ribera RG Beutel M Balke AP Vogler, Proc R Soc Lond B 2002 269 1507 2351 2356 10.1098/rspb.2002.2157
34. Recent developments in the MAFFT multiple sequence alignment program. K Katoh H Toh, Brief Bioinform 2008 9 286 298 10.1093/bib/bbn013 18372315
35. An algorithm for progressive multiple alignment of sequences with insertions. A Loytynoja N Goldman, Proc Natl Acad Sci USA 2005 102 10557 10562 10.1073/pnas.0409137102 16000407
36. MRBAYES: Bayesian inference of phylogenetic trees. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383
37. MODELTEST: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 817 818 10.1093/bioinformatics/14.9.817 9918953
38. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. D Zwickl, Austin: Texas 2006
39. Relative motions of Africa, Iberia and Europe during Alpine orogeny. G Rosenbaum GS Lister C Duboz, Tectonophysics 2002 359 117 129 10.1016/S0040-1951(02)00442-0
40. Plate kinematics of the Western Mediterranean region during the Oligocene and Early Miocene. A Schettino E Turco, Geophys J Int 2006 166 1398 1423 10.1111/j.1365-246X.2006.02997.x
41. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. S Ho M Phillips, Syst Biol 2009 58 367 380 10.1093/sysbio/syp035
42. BEAST: Bayesian evolutionary analysis by sampling trees. A Drummond A Rambaut, BMC Evol Biol 2007 7 214 10.1186/1471-2148-7-214 17996036
43. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. MJ Sanderson, Mol Biol Evol 2002 19 101 109 11752195
44. PAUP*: Phylogenetic Analysis Using Parsimony (* and Other Methods) Version 4. DL Swofford, Sunderland, MA.: Sinauer Associates 2002 12504223
45. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. P Erixon B Svennblad T Britton B Oxelman, Syst Biol 2003 52 665 673 10.1080/10635150390235485 14530133
46. The genus Bathysciola Jeannel, 1910 in the Iberian Peninsula and Pyrenees. Taxonomic revision of the sections IV, VI and VII (Jeannel, 1924) (Coleoptera, Cholevidae, Leptodirinae). J Fresneda JM Salgado, Graellsia 2006 62 45 54
47. A new revision and taxonomic position for the Cantabrian Leptodirini: sections Quaestus and Speonomidius (Coleoptera: Cholevidae). JM Salgado, Ann Soc ent Fr (NS) 2000 36 45 59
48. Revision of the section Anillochlamys Jeannel, 1909 (Coleoptera: Leiodidae: Cholevinae: Leptodirini). JM Salgado J Fresneda, Ann Soc ent Fr (NS) 2003 39 361 384
49. Los Bathysciinae ibéricos, propuesta de ordenacián taxonámica (Col. Catopidae). X Bellés J Comas O Escol F Espãol, Speleon 1978 24 59 68
50. Leptodirinae del Caucaso e dell'Iran settentrionale (Coleoptera Cholevidae). S Zoia M Rampini, Rev suisse Zool 1994 101 771 827
51. The modern molecular clock. L Bromham D Penny, Nat Rev Genet 2003 4 216 224 10.1038/nrg1020 12610526
52. Rocks and clocks: calibrating the Tree of Life using fossils and molecules. PCJ Donoghue MJ Benton, Trends Ecol Evol 2007 22 424 431 10.1016/j.tree.2007.05.005 17573149
53. Dates from the molecular clock: how wrong can we be? MJF Pulquerio RA Nichols, Trends Ecol Evol 2007 22 180 184 10.1016/j.tree.2006.11.013 17157408
54. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial-DNA evolution. AVZ Brower, Proc Natl Acad Sci USA 1994 91 14 6491 6495 10.1073/pnas.91.14.6491 8022810
55. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. J Pons TG Barraclough J Gomez-Zurita A Cardoso DP Duran S Hazell S Kamoun WD Sumlin AP Vogler, Syst Biol 2006 55 595 609 10.1080/10635150600852011 16967577
56. Evolution and diversification of the forest and hypogean ground-beetle genus Trechus in the Canary Islands. HG Contreras-Díaz O Moya P Oromí C Juan, Mol Phylogenet Evol 2007 42 687 699 10.1016/j.ympev.2006. 10.007 17116412
57. New Guinea highland origin of a widespread arthropod supertramp. M Balke I Ribera L Hendrich MA Miller K Sagata A Posman AP Vogler R Meier, Proc R Soc Lond B 2009 276 2359 2367 10.1098/rspb.2009.0015
58. Agabus alexandrae sp. n. from Morocco, with a molecular phylogeny of the Western Mediterranean species of the A. guttatus group (Coleoptera: Dytiscidae). I Ribera C Hernando P Aguilera, Ins Syst Evol 2001 32 253 262
59. Bridging the 'beech-gap': invertebrate phylogeography implicates recent rather than ancient processes in New Zealand biogeographic patterns. SA Trewick GP Wallis, Evolution 2001 55 2170 2180 11794778
60. Tertiary compressional deformation of the Iberian plate. AM Casas Sainz C Faccenna, Terra Nova 2001 13 281 288 10.1046/j.1365-3121.2001.00355.x
61. La cordillera Pirenaica. A Barnolas V Pujalte, Geología de Espãa Madrid: SGE-IGME, Vera J, 2004 233 241
62. The age of subterranean crayfish species. A comment on Buhay & Crandall (2005): subterranean phylogeography of freshwater crayfishes shows extensive gene flow and surprisingly large population sizes. P Trontelj, Mol Ecol 2007 16 2841 2843 10.1111/j.1365-294X.2007.03345.x 17614899
63. Age estimates for some subterranean taxa and lineages in the Dinaric Karst. P Trontelj S Goricki S Polak R Verovnik V Zaksek B Sket, Time in Karst Meeting: March 2007; Postojna, Slovenia 2007 18 3 189
64. A phylogenetic perspective on 160 years of troubled taxonomy of Niphargus (Crustacea: Amphipoda). C Fiser B Sket P Trontelj, Zool Scr 2008 37 665 680 10.1111/j.1463-6409.2008.00347.x
65. The imprint of Quaternary glaciers on the present-day distribution of the obligate groundwater amphipod Niphargus virei (Niphargidae). A Foulquier F Malard T Lefebure J Gibert CJ Douady, J Biogeogr 2008 35 552 564 10.1111/j.1365-2699.2007.01795.x
66. Under the volcano: phylogeography and evolution of the cave-dwelling Palmorchestia hypogaea (Amphipoda, Crustacea) at La Palma (Canary Islands). C Villacorta D Jaume P Oromí C Juan, BMC Biol 2008 6 10.1186/1741-7007-6-7 18234125
67. Molecular genetic variation and population structure in morphologically differentiated cave and surface populations of the freshwater amphipod Gammarus minus. DB Carlini J Manning PG Sullivan DW Fong, Mol Ecol 2009 18 1932 1945 10.1111/j.1365-294X.2009.04161.x 19434810
68. Mitochondrial markers reveal deep population subdivision in the European protected spider Macrothele calpeiana (Walckenaer, 1805) (Araneae, Hexathelidae). MA Arnedo MA Ferrndez, Conserv Genet 2007 8 1147 1162 10.1007/s10592-006-9270-2
69. A Synopsis of the cave beetles of the genus Pseudanophthalmus of the Mitchell Plain in Southern Indiana (Coleoptera, Carabidae). TC Barr, Am Mid Nat 1960 63 307 320 10.2307/2422794
70. Patterns of endemism of the eastern North American cave fauna. M Christman D Culver M Madden D White, J Biogeogr 2005 32 1441 1452
71. Subterranean phylogeography of freshwater crayfishes shows extensive gene flow and surprisingly large population sizes. JE Buhay KA Crandall, Mol Ecol 2005 14 4259 4273 16313591
72. Evolution, weighting, and phylogenetic utility of mitochondrial gene-sequences and a compilation of conserved polymerase chain-reaction primers. C Simon F Frati A Beckenbach B Crespi H Liu P Flook, Ann ent Soc Am 1994 87 651 701
73. Testing whether ecological factors promote cladogenesis in a group of tiger beetles (Coleoptera: Cicindelidae). TG Barraclough JE Hogan AP Vogler, Proc R Soc Lond B 1999 266 1423 1061 1067 10.1098/rspb.1999.0744
74. Molecular population genetics of the endangered tiger beetle Cicindela dorsalis (Coleoptera, Cicindelidae). AP Vogler R Desalle T Assmann CB Knisley TD Schultz, Ann ent Soc Am 1993 86 142 152