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Volumn 85, Issue 3, 2011, Pages 190-198

Comparison of microbial community assays for the assessment of stream biofilm ecology

Author keywords

Biofilm; M TRFLP; Microbial community analysis; Stream ecology

Indexed keywords

CHLOROPHYLL A; FATTY ACID; ISOPROTURON; NITROGEN; PHOSPHORUS; POTASSIUM CHLORIDE;

EID: 79955096331     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2011.03.001     Document Type: Article
Times cited : (25)

References (68)
  • 1
    • 43149117498 scopus 로고    scopus 로고
    • Spatial and temporal variability in epilithic biofilm bacterial communities along an upland river gradient
    • Anderson-Glenna M.J., Bakkestuen V., Clipson N.J.W. Spatial and temporal variability in epilithic biofilm bacterial communities along an upland river gradient. FEMS Microbiology Ecology 2008, 64:407-418.
    • (2008) FEMS Microbiology Ecology , vol.64 , pp. 407-418
    • Anderson-Glenna, M.J.1    Bakkestuen, V.2    Clipson, N.J.W.3
  • 2
    • 0037311880 scopus 로고    scopus 로고
    • Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescent in situ hybridization and DGGE analysis
    • Araya R., Tani K., Takagi T., Yamaguchi N., Nasu M. Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescent in situ hybridization and DGGE analysis. FEMS Microbiology Ecology 2003, 43:111-119.
    • (2003) FEMS Microbiology Ecology , vol.43 , pp. 111-119
    • Araya, R.1    Tani, K.2    Takagi, T.3    Yamaguchi, N.4    Nasu, M.5
  • 4
    • 34548132711 scopus 로고    scopus 로고
    • Substrate utilisation profiles of microbial communities in peat are depth dependent and correlate with whole soil FTIR profiles
    • Artz R.R.E., Chapman S.J., Campbell C.D. Substrate utilisation profiles of microbial communities in peat are depth dependent and correlate with whole soil FTIR profiles. Soil Biology and Biochemistry 2006, 38(9):2958-2962.
    • (2006) Soil Biology and Biochemistry , vol.38 , Issue.9 , pp. 2958-2962
    • Artz, R.R.E.1    Chapman, S.J.2    Campbell, C.D.3
  • 5
    • 0345414146 scopus 로고    scopus 로고
    • Contributions of microbial biofilms to ecosystem processes in stream mesocosms
    • Battin T.J., Kaplan L.A., Newbould J.D., Hansen C.M.E. Contributions of microbial biofilms to ecosystem processes in stream mesocosms. Nature 2003, 426:439-441.
    • (2003) Nature , vol.426 , pp. 439-441
    • Battin, T.J.1    Kaplan, L.A.2    Newbould, J.D.3    Hansen, C.M.E.4
  • 6
    • 13844301901 scopus 로고    scopus 로고
    • The use of phospholipid fatty acid analysis to measure impact of acid rock drainage on microbial communities in sediments
    • Ben-David E.A., Holden P.J., Stone D.J.M., Harch B.D., Foster L.J. The use of phospholipid fatty acid analysis to measure impact of acid rock drainage on microbial communities in sediments. Microbial Ecology 2004, 48:300-315.
    • (2004) Microbial Ecology , vol.48 , pp. 300-315
    • Ben-David, E.A.1    Holden, P.J.2    Stone, D.J.M.3    Harch, B.D.4    Foster, L.J.5
  • 7
    • 79955090032 scopus 로고    scopus 로고
    • Microalgae community structure analysis based on 18S rDNA amplification from DNA extracted directly from soil as a potential soil bioindicator
    • Bérard A., Dorigo U., Humbert J.F., Martin-Laurent F. Microalgae community structure analysis based on 18S rDNA amplification from DNA extracted directly from soil as a potential soil bioindicator. Agronomie 2005, 25:1-7.
    • (2005) Agronomie , vol.25 , pp. 1-7
    • Bérard, A.1    Dorigo, U.2    Humbert, J.F.3    Martin-Laurent, F.4
  • 9
    • 0034732715 scopus 로고    scopus 로고
    • The transport and behaviour of isoproturon in unsaturated chalk cores
    • Besien T.J., Williams R.J., Johnson A.C. The transport and behaviour of isoproturon in unsaturated chalk cores. Journal of Contaminant Hydrology 2000, 43(2):91-110.
    • (2000) Journal of Contaminant Hydrology , vol.43 , Issue.2 , pp. 91-110
    • Besien, T.J.1    Williams, R.J.2    Johnson, A.C.3
  • 10
    • 0036070426 scopus 로고    scopus 로고
    • Taxanomic richness of stream benthic algae: effects of flood disturbance and nutrients
    • Biggs B.J.F., Smith R.A. Taxanomic richness of stream benthic algae: effects of flood disturbance and nutrients. Limnology and Oceanography 2002, 47(40):1175-1186.
    • (2002) Limnology and Oceanography , vol.47 , Issue.40 , pp. 1175-1186
    • Biggs, B.J.F.1    Smith, R.A.2
  • 12
    • 0038315527 scopus 로고    scopus 로고
    • A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial communities by using whole soil
    • Campbell C.D., Chapman S.J., Cameron C.M., Davidson M.S., Potts J.M. A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial communities by using whole soil. Applied and Environmental Microbiology 2003, 69:3593-3599.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 3593-3599
    • Campbell, C.D.1    Chapman, S.J.2    Cameron, C.M.3    Davidson, M.S.4    Potts, J.M.5
  • 13
    • 2942702380 scopus 로고    scopus 로고
    • Rock fragments in soil support a different microbial community from the fine earth
    • Certini G., Campbell C.D., Edwards A.C. Rock fragments in soil support a different microbial community from the fine earth. Soil Biology and Biochemistry 2004, 36:1119-1128.
    • (2004) Soil Biology and Biochemistry , vol.36 , pp. 1119-1128
    • Certini, G.1    Campbell, C.D.2    Edwards, A.C.3
  • 14
    • 37549036748 scopus 로고    scopus 로고
    • Assessing CLPPs using MicroReSp (TM) - a comparison with biolog and multi-SIR
    • Chapman S.J., Campbell C.D., Artz R.R.E. Assessing CLPPs using MicroReSp (TM) - a comparison with biolog and multi-SIR. Journal of Soils and Sediments 2007, 7:406-410.
    • (2007) Journal of Soils and Sediments , vol.7 , pp. 406-410
    • Chapman, S.J.1    Campbell, C.D.2    Artz, R.R.E.3
  • 15
    • 79955114095 scopus 로고    scopus 로고
    • Pesticides: risks to lakes and streams?
    • Chevre, Escher Pesticides: risks to lakes and streams?. EAWAG News 2003, 59.
    • (2003) EAWAG News , vol.59
    • Chevre1    Escher2
  • 18
    • 34848833544 scopus 로고    scopus 로고
    • A seasonal survey of surface water habitats within the River Spey basin, Scotland: major nutrient properties
    • Demars B.O.L., Edwards A.C. A seasonal survey of surface water habitats within the River Spey basin, Scotland: major nutrient properties. Aquatic Conservation: Marine and Freshwater Ecosystems 2007, 17:565-583.
    • (2007) Aquatic Conservation: Marine and Freshwater Ecosystems , vol.17 , pp. 565-583
    • Demars, B.O.L.1    Edwards, A.C.2
  • 19
    • 57049114873 scopus 로고    scopus 로고
    • Distribution of aquatic macrophytes in contrasting river systems: a critique of compositional-based assessment of water quality
    • Demars B.O.L., Edwards A.C. Distribution of aquatic macrophytes in contrasting river systems: a critique of compositional-based assessment of water quality. The Science of the Total Environment 2009, 407:975-990.
    • (2009) The Science of the Total Environment , vol.407 , pp. 975-990
    • Demars, B.O.L.1    Edwards, A.C.2
  • 21
    • 31544479464 scopus 로고    scopus 로고
    • A technique for establishing reference nutrient concentrations across watersheds affected by humans
    • Dodds W.K., Oakes R.M. A technique for establishing reference nutrient concentrations across watersheds affected by humans. Limnology Oceanographic Methods 2004, 2:333-341.
    • (2004) Limnology Oceanographic Methods , vol.2 , pp. 333-341
    • Dodds, W.K.1    Oakes, R.M.2
  • 22
    • 0344301938 scopus 로고    scopus 로고
    • Suggested classification of stream coastal state: distribution of temperate stream types by chlorophyll, total nitrogen and phosphorus
    • Dodds W.K., Jones J.R., Welch E.B. Suggested classification of stream coastal state: distribution of temperate stream types by chlorophyll, total nitrogen and phosphorus. Water Research 1998, 32:1455-1462.
    • (1998) Water Research , vol.32 , pp. 1455-1462
    • Dodds, W.K.1    Jones, J.R.2    Welch, E.B.3
  • 23
    • 84977421344 scopus 로고
    • Co-inertia analysis: an alternative method for studying species-environment relationships
    • Dolédec S., Chessel D. Co-inertia analysis: an alternative method for studying species-environment relationships. Freshwater Biology 1994, 31:277-294.
    • (1994) Freshwater Biology , vol.31 , pp. 277-294
    • Dolédec, S.1    Chessel, D.2
  • 24
    • 20544466181 scopus 로고    scopus 로고
    • Molecular approaches to the assessment of biodiversity in aquatic communities
    • Dorigo U., Voltier L., Humbert J.-F. Molecular approaches to the assessment of biodiversity in aquatic communities. Water Research 2005, 39:2207-2218.
    • (2005) Water Research , vol.39 , pp. 2207-2218
    • Dorigo, U.1    Voltier, L.2    Humbert, J.-F.3
  • 25
    • 0000237483 scopus 로고
    • Algal periphyton growth on nutrient-diffusing substrates: an in-situ bioassay
    • Fairchild G.W., Lowe R.L., Richardson W.B. Algal periphyton growth on nutrient-diffusing substrates: an in-situ bioassay. Ecology 1985, 66:465-472.
    • (1985) Ecology , vol.66 , pp. 465-472
    • Fairchild, G.W.1    Lowe, R.L.2    Richardson, W.B.3
  • 28
    • 0141676456 scopus 로고    scopus 로고
    • Macroinvertebrate/sediment relationships along a pesticide gradient in Danish streams
    • Friberg N., Lindstrøm M., Kronvang B., Larsen S.E. Macroinvertebrate/sediment relationships along a pesticide gradient in Danish streams. Hydrobiologia 2003, 494:103-110.
    • (2003) Hydrobiologia , vol.494 , pp. 103-110
    • Friberg, N.1    Lindstrøm, M.2    Kronvang, B.3    Larsen, S.E.4
  • 29
    • 0027484760 scopus 로고
    • Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals
    • Frostegård Å., Tunlid A., Bååth E. Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Applied and Environmental Microbiology 1993, 59:3605-3617.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 3605-3617
    • Frostegård, Å.1    Tunlid, A.2    Bååth, E.3
  • 31
    • 84877668514 scopus 로고    scopus 로고
    • Trends in diffuse pollution: data report to assist with the design and implementation of effective diffuse pollution monitoring programs
    • SEPA
    • Greig S. Trends in diffuse pollution: data report to assist with the design and implementation of effective diffuse pollution monitoring programs. Diffuse Pollution Initiative Special Report No. 19 2004, SEPA.
    • (2004) Diffuse Pollution Initiative Special Report No. 19
    • Greig, S.1
  • 33
    • 0037270318 scopus 로고    scopus 로고
    • Forest streamwater concentrations of nitrogen and phosphorus: a comparison with EPA's proposed water quality criteria
    • Ice G.G., Binkley D. Forest streamwater concentrations of nitrogen and phosphorus: a comparison with EPA's proposed water quality criteria. Journal of Forestry 2003, 101(1):21-28.
    • (2003) Journal of Forestry , vol.101 , Issue.1 , pp. 21-28
    • Ice, G.G.1    Binkley, D.2
  • 34
    • 0028982659 scopus 로고
    • The trophic diatom index: a new index for monitoring eutrophication in rivers
    • Kelly M.G., Whitton B.A. The trophic diatom index: a new index for monitoring eutrophication in rivers. Journal of Applied Phycology 1995, 7:433-444.
    • (1995) Journal of Applied Phycology , vol.7 , pp. 433-444
    • Kelly, M.G.1    Whitton, B.A.2
  • 35
    • 9244236055 scopus 로고    scopus 로고
    • Mass transfer-limited nitrogen and phosphorus uptake by stream periphyton: a conceptual model and experimental evidence
    • Larned S.T., Nikora V.I., Biggs J.F. Mass transfer-limited nitrogen and phosphorus uptake by stream periphyton: a conceptual model and experimental evidence. Limnology and Oceanography 2004, 49(6):1992-2000.
    • (2004) Limnology and Oceanography , vol.49 , Issue.6 , pp. 1992-2000
    • Larned, S.T.1    Nikora, V.I.2    Biggs, J.F.3
  • 36
    • 8844237677 scopus 로고    scopus 로고
    • Benthic algae as bioindicators of agricultural pollution in the streams and rivers of southern Quebec (Canada)
    • Lavoie I., Vincent W.F., Pienitz R., Painchaud J. Benthic algae as bioindicators of agricultural pollution in the streams and rivers of southern Quebec (Canada). Aquatic Ecosystem Health & Management 2004, 7(1):43-58.
    • (2004) Aquatic Ecosystem Health & Management , vol.7 , Issue.1 , pp. 43-58
    • Lavoie, I.1    Vincent, W.F.2    Pienitz, R.3    Painchaud, J.4
  • 37
    • 44949161252 scopus 로고    scopus 로고
    • Community-level assessment of the effects of the broad-spectrum antimicrobial chlorhexidine on the outcome of river microbial biofilm development
    • Lawrence J.R., Zhu B., Swerhone G.D.W., Topp E., Roy J., Wassenaar L.I., Rema T., Korber D.R. Community-level assessment of the effects of the broad-spectrum antimicrobial chlorhexidine on the outcome of river microbial biofilm development. Applied and Environmental Microbiology 2008, 74(11):3541-3550. 10.1128/AEM.02879-07.
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.11 , pp. 3541-3550
    • Lawrence, J.R.1    Zhu, B.2    Swerhone, G.D.W.3    Topp, E.4    Roy, J.5    Wassenaar, L.I.6    Rema, T.7    Korber, D.R.8
  • 39
    • 49849101295 scopus 로고    scopus 로고
    • Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic examination of soil evidence and the influence of sample condition
    • Macdonald L.M., Singh B.K., Thomas N., Brewer M., Campbell C.D., Dawson L.A. Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic examination of soil evidence and the influence of sample condition. Journal of Applied Microbiology 2008, 105:813-821.
    • (2008) Journal of Applied Microbiology , vol.105 , pp. 813-821
    • Macdonald, L.M.1    Singh, B.K.2    Thomas, N.3    Brewer, M.4    Campbell, C.D.5    Dawson, L.A.6
  • 41
    • 0026269630 scopus 로고
    • Mechanisms of benthic algal succession in lotic environments
    • Mc Cormick P.V., Stevenson R.J. Mechanisms of benthic algal succession in lotic environments. Ecology 1991, 72:1835-1848.
    • (1991) Ecology , vol.72 , pp. 1835-1848
    • Mc Cormick, P.V.1    Stevenson, R.J.2
  • 42
    • 34547579868 scopus 로고    scopus 로고
    • Genotypic microbial community profiling: a critical technical review
    • Nocker A., Burr M., Camper A.K. Genotypic microbial community profiling: a critical technical review. Microbial Ecology 2007, 54:276-289.
    • (2007) Microbial Ecology , vol.54 , pp. 276-289
    • Nocker, A.1    Burr, M.2    Camper, A.K.3
  • 44
    • 9644300800 scopus 로고    scopus 로고
    • Seasonal dynamics of bacterial assemblages in epilithic biofilms in a northeastern Ohio stream
    • Olapade O.A., Leff L.G. Seasonal dynamics of bacterial assemblages in epilithic biofilms in a northeastern Ohio stream. Journal of North American Benthological Society 2004, 23(4):686-700.
    • (2004) Journal of North American Benthological Society , vol.23 , Issue.4 , pp. 686-700
    • Olapade, O.A.1    Leff, L.G.2
  • 46
    • 0025683253 scopus 로고
    • Seasonal variations in bacterial communities in adirondack streams exhibiting pH gradients
    • Osgood M.P., Boylen C.W. Seasonal variations in bacterial communities in adirondack streams exhibiting pH gradients. Microbial Ecology 1990, 20:211-230.
    • (1990) Microbial Ecology , vol.20 , pp. 211-230
    • Osgood, M.P.1    Boylen, C.W.2
  • 49
    • 0036207692 scopus 로고    scopus 로고
    • Benthic diatoms in USA rivers: distributions along spatial and environmental gradients
    • Potapova M.G., Charles D.F. Benthic diatoms in USA rivers: distributions along spatial and environmental gradients. Journal of Biogeography 2002, 29:167-187.
    • (2002) Journal of Biogeography , vol.29 , pp. 167-187
    • Potapova, M.G.1    Charles, D.F.2
  • 50
    • 0042200214 scopus 로고    scopus 로고
    • Distribution of benthic diatoms in US rivers in relation to conductivity and ionic composition
    • Potapova M., Charles D.F. Distribution of benthic diatoms in US rivers in relation to conductivity and ionic composition. Freshwater Biology 2003, 48:1311-1328.
    • (2003) Freshwater Biology , vol.48 , pp. 1311-1328
    • Potapova, M.1    Charles, D.F.2
  • 51
    • 0025235928 scopus 로고
    • Nutrient spatial heterogeneity: effects on community structure, physiognomy, and diversity of stream algae
    • Pringle C.M. Nutrient spatial heterogeneity: effects on community structure, physiognomy, and diversity of stream algae. Ecology 1990, 71:905-920.
    • (1990) Ecology , vol.71 , pp. 905-920
    • Pringle, C.M.1
  • 57
    • 33751006742 scopus 로고    scopus 로고
    • Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community
    • Singh B.K., Nazaries L., Munro S., Anderson I., Campbell C. Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community. Applied and Environmental Microbiology 2006, 72:7278-7285.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 7278-7285
    • Singh, B.K.1    Nazaries, L.2    Munro, S.3    Anderson, I.4    Campbell, C.5
  • 59
    • 8144221583 scopus 로고    scopus 로고
    • Long term responses of the kuparak river ecosystem to phosphorus fertilization
    • Slavik K., Peterson B.J., Deegan L.A., Bowden W.B., Hershey A.E., Hobbie J.E. Long term responses of the kuparak river ecosystem to phosphorus fertilization. Ecology 2004, 85(4):939-954.
    • (2004) Ecology , vol.85 , Issue.4 , pp. 939-954
    • Slavik, K.1    Peterson, B.J.2    Deegan, L.A.3    Bowden, W.B.4    Hershey, A.E.5    Hobbie, J.E.6
  • 62
    • 1642546965 scopus 로고    scopus 로고
    • Co-correspondence analysis: a new ordination method to relate two community compositions
    • Ter Braak C.J.F., Schaffers A.P. Co-correspondence analysis: a new ordination method to relate two community compositions. Ecology 2004, 85:834-846.
    • (2004) Ecology , vol.85 , pp. 834-846
    • Ter Braak, C.J.F.1    Schaffers, A.P.2
  • 63
    • 78349313772 scopus 로고    scopus 로고
    • Use of the MicroResp (TM) method to assess pollution-induced community tolerance to metals for lotic biofilms
    • Tlili A., Marechal M., Montuelle B., Volat B., Dorigo U., Berard A. Use of the MicroResp (TM) method to assess pollution-induced community tolerance to metals for lotic biofilms. Environmental Pollution 2011, 159:18-24.
    • (2011) Environmental Pollution , vol.159 , pp. 18-24
    • Tlili, A.1    Marechal, M.2    Montuelle, B.3    Volat, B.4    Dorigo, U.5    Berard, A.6
  • 64
    • 79955105480 scopus 로고    scopus 로고
    • UKTAG
    • UKTAG http://www.wfduk.org/UK_Environmental_Standards/ES_Phase1_final_report/LibraryPublicDocs/UKTAG%20ReportAug%202006UKEnvironmentalStandardsandConditionsFinalReport.
  • 66
    • 0028993849 scopus 로고
    • Stream periphyton response to grazing and changes in phosphorus concentration
    • Walton S.P., Welch E.B., Horner R.R. Stream periphyton response to grazing and changes in phosphorus concentration. Hydrobiologia 1995, 302:31-46.
    • (1995) Hydrobiologia , vol.302 , pp. 31-46
    • Walton, S.P.1    Welch, E.B.2    Horner, R.R.3
  • 67
    • 0034440137 scopus 로고    scopus 로고
    • Stream epilithic, epipelic and epiphytic diatoms: habitat fidelity and use in biomoitoring
    • Winter J.G., Duthie H.C. Stream epilithic, epipelic and epiphytic diatoms: habitat fidelity and use in biomoitoring. Aquatic Ecology 2000, 34:345-353.
    • (2000) Aquatic Ecology , vol.34 , pp. 345-353
    • Winter, J.G.1    Duthie, H.C.2


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