-
2
-
-
56649091351
-
Molecular evolution of synonymous codon usage in Populus
-
10.1186/1471-2148-8-307. 18983655
-
Molecular evolution of synonymous codon usage in Populus. PK Ingvarsson, BMC Evol Biol 2008 8 307 10.1186/1471-2148-8-307 18983655
-
(2008)
BMC Evol Biol
, vol.8
, pp. 307
-
-
Ingvarsson, P.K.1
-
3
-
-
25444441055
-
Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity
-
10.1186/1471-2105-6-182. 16029499
-
Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity. F Supek K Vlahovicek, BMC Bioinformatics 2005 6 182 10.1186/1471-2105-6-182 16029499
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 182
-
-
Supek, F.1
Vlahovicek, K.2
-
4
-
-
4043056141
-
Codon usage bias and mutation constraints reduce the level of error minimization of the genetic code
-
DOI 10.1007/s00239-004-2620-0
-
Codon usage bias and mutation constraints reduce the level of error minimization of the genetic code. M Archetti, J Mol Evol 2004 59 258 266 10.1007/s00239-004-2620-0 15486699 (Pubitemid 39128348)
-
(2004)
Journal of Molecular Evolution
, vol.59
, Issue.2
, pp. 258-266
-
-
Archetti, M.1
-
5
-
-
77951970677
-
Codon usage bias and recombination events for neuraminidase and hemagglutinin genes in Chinese isolates of influenza A virus subtype H9N2
-
10.1007/s00705-010-0631-2. 20300785
-
Codon usage bias and recombination events for neuraminidase and hemagglutinin genes in Chinese isolates of influenza A virus subtype H9N2. X Liu C Wu AY Chen, Arch Virol 2010 155 685 693 10.1007/s00705-010-0631-2 20300785
-
(2010)
Arch Virol
, vol.155
, pp. 685-693
-
-
Liu, X.1
Wu, C.2
Chen, A.Y.3
-
6
-
-
0035802405
-
Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): Characterization of horizontally transferred genes with emphasis on the E. coli O157 genome
-
DOI 10.1016/S0378-1119(01)00673-4, PII S0378111901006734
-
Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome. S Kanaya M Kinouchi T Abe Y Kudo Y Yamada T Nishi H Mori T Ikemura, Gene 2001 276 89 99 10.1016/S0378-1119(01) 00673-4 11591475 (Pubitemid 32925263)
-
(2001)
Gene
, vol.276
, Issue.1-2
, pp. 89-99
-
-
Kanaya, S.1
Kinouchi, M.2
Abe, T.3
Kudo, Y.4
Yamada, Y.5
Nishi, T.6
Mori, H.7
Ikemura, T.8
-
7
-
-
0030569016
-
What drives codon choices in human genes?
-
DOI 10.1006/jmbi.1996.0528
-
What drives codon choices in human genes? S Karlin J Mrazek, J Mol Biol 1996 262 459 472 10.1006/jmbi.1996.0528 8893856 (Pubitemid 26341167)
-
(1996)
Journal of Molecular Biology
, vol.262
, Issue.4
, pp. 459-472
-
-
Karlin, S.1
Mrazek, J.2
-
8
-
-
0023762645
-
Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; A review of the considerable within-species diversity
-
10.1093/nar/16.17.8207. 3138659
-
Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. PM Sharp E Cowe DG Higgins DC Shields KH Wolfe F Wright, Nucleic Acids Res 1988 16 8207 8211 10.1093/nar/16.17.8207 3138659
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 8207-8211
-
-
Sharp, P.M.1
Cowe, E.2
Higgins, D.G.3
Shields, D.C.4
Wolfe, K.H.5
Wright, F.6
-
9
-
-
33745654553
-
Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses
-
DOI 10.1007/s00239-005-0221-1
-
Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses. LA Shackelton CR Parrish EC Holmes, J Mol Evol 2006 62 551 563 10.1007/s00239-005-0221-1 16557338 (Pubitemid 43965543)
-
(2006)
Journal of Molecular Evolution
, vol.62
, Issue.5
, pp. 551-563
-
-
Shackelton, L.A.1
Parrish, C.R.2
Holmes, E.C.3
-
10
-
-
0027715731
-
Codon usage: Mutational bias, translational selection, or both?
-
Codon usage: mutational bias, translational selection, or both? PM Sharp M Stenico JF Peden AT Lloyd, Biochem Soc Trans 1993 21 835 841 8132077 (Pubitemid 24011739)
-
(1993)
Biochemical Society Transactions
, vol.21
, Issue.4
, pp. 835-841
-
-
Sharp, P.M.1
Stenico, M.2
Peden, J.F.3
Lloyd, A.T.4
-
11
-
-
35548932951
-
Mutation pressure shapes codon usage in the GC-Rich genome of foot-and-mouth disease virus
-
DOI 10.1007/s11262-007-0159-z
-
Mutation pressure shapes codon usage in the GC-Rich genome of foot-and-mouth disease virus. J Zhong Y Li S Zhao S Liu Z Zhang, Virus Genes 2007 35 767 776 10.1007/s11262-007-0159-z 17768673 (Pubitemid 350012787)
-
(2007)
Virus Genes
, vol.35
, Issue.3
, pp. 767-776
-
-
Zhong, J.1
Li, Y.2
Zhao, S.3
Liu, S.4
Zhang, Z.5
-
12
-
-
58149470634
-
Analysis of synonymous codon usage in classical swine fever virus
-
10.1007/s11262-008-0296-z. 18958611
-
Analysis of synonymous codon usage in classical swine fever virus. P Tao L Dai M Luo F Tang P Tien Z Pan, Virus Genes 2009 38 104 112 10.1007/s11262-008-0296-z 18958611
-
(2009)
Virus Genes
, vol.38
, pp. 104-112
-
-
Tao, P.1
Dai, L.2
Luo, M.3
Tang, F.4
Tien, P.5
Pan, Z.6
-
13
-
-
77949908785
-
Codon usage bias in herpesvirus
-
10.1007/s00705-010-0597-0. 20107845
-
Codon usage bias in herpesvirus. M Fu, Arch Virol 2010 155 391 396 10.1007/s00705-010-0597-0 20107845
-
(2010)
Arch Virol
, vol.155
, pp. 391-396
-
-
Fu, M.1
-
14
-
-
34248226242
-
Analysis of codon usage bias and base compositional constraints in iridovirus genomes
-
10.1016/j.virusres.2007.03.001. 17434639
-
Analysis of codon usage bias and base compositional constraints in iridovirus genomes. CT Tsai CH Lin CY Chang, Virus Res 2007 126 196 206 10.1016/j.virusres.2007.03.001 17434639
-
(2007)
Virus Res
, vol.126
, pp. 196-206
-
-
Tsai, C.T.1
Lin, C.H.2
Chang, C.Y.3
-
15
-
-
77958523914
-
Mechanisms of genetic variation in polioviruses
-
10.1002/rmv.663. 20949639
-
Mechanisms of genetic variation in polioviruses. C Savolainen-Kopra S Blomqvist, Rev Med Virol 2010 20 358 371 10.1002/rmv.663 20949639
-
(2010)
Rev Med Virol
, vol.20
, pp. 358-371
-
-
Savolainen-Kopra, C.1
Blomqvist, S.2
-
17
-
-
27144546976
-
Vaccine-derived polioviruses and the endgame strategy for global polio eradication
-
DOI 10.1146/annurev.micro.58.030603.123625
-
Vaccine-derived polioviruses and the endgame strategy for global polio eradication. OM Kew RW Sutter EM de Gourville WR Dowdle MA Pallansch, Annu Rev Microbiol 2005 59 587 635 10.1146/annurev.micro.58.030603.123625 16153180 (Pubitemid 41507443)
-
(2005)
Annual Review of Microbiology
, vol.59
, pp. 587-635
-
-
Kew, O.M.1
Sutter, R.W.2
De Gourville, E.M.3
Dowdle, W.R.4
Pallansch, M.A.5
-
19
-
-
33646790850
-
Vaccine-derived polioviruses
-
DOI 10.1016/j.biologicals.2006.02.007, PII S1045105606000339
-
Vaccine-derived polioviruses. VI Agol, Biologicals 2006 34 103 108 10.1016/j.biologicals.2006.02.007 16650771 (Pubitemid 43765784)
-
(2006)
Biologicals
, vol.34
, Issue.2
, pp. 103-108
-
-
Agol, V.I.1
-
20
-
-
18644375803
-
Analysis of synonymous codon usage bias in Chlamydia
-
Analysis of synonymous codon usage bias in Chlamydia. H Lu WM Zhao Y Zheng H Wang M Qi XP Yu, Acta Biochim Biophys Sin (Shanghai) 2005 37 1 10 10.1093/abbs/37.1.1 15645075 (Pubitemid 40663608)
-
(2005)
Acta Biochimica et Biophysica Sinica
, vol.37
, Issue.1
, pp. 1-10
-
-
Lu, H.1
Zhao, W.-M.2
Zheng, Y.3
Wang, H.4
Qi, M.5
Yu, X.-P.6
-
21
-
-
0025318864
-
The 'effective number of codons' used in a gene
-
DOI 10.1016/0378-1119(90)90491-9
-
The 'effective number of codons' used in a gene. F Wright, Gene 1990 87 23 29 10.1016/0378-1119(90)90491-9 2110097 (Pubitemid 20139850)
-
(1990)
Gene
, vol.87
, Issue.1
, pp. 23-29
-
-
Wright, F.1
-
22
-
-
0023046211
-
Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons
-
10.1093/nar/14.19.7737. 3534792
-
Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons. PM Sharp WH Li, Nucleic Acids Res 1986 14 7737 7749 10.1093/nar/14.19.7737 3534792
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 7737-7749
-
-
Sharp, P.M.1
Li, W.H.2
-
23
-
-
77955486401
-
Analysis of synonymous codon usage in foot-and-mouth disease virus
-
10.1007/s11259-010-9359-4. 20425142
-
Analysis of synonymous codon usage in foot-and-mouth disease virus. JH Zhou J Zhang HT Chen LN Ma YS Liu, Vet Res Commun 2010 34 393 404 10.1007/s11259-010-9359-4 20425142
-
(2010)
Vet Res Commun
, vol.34
, pp. 393-404
-
-
Zhou, J.H.1
Zhang, J.2
Chen, H.T.3
Ma, L.N.4
Liu, Y.S.5
-
24
-
-
0029060923
-
Dinucleotide relative abundance extremes: A genomic signature
-
10.1016/S0168-9525(00)89076-9. 7482779
-
Dinucleotide relative abundance extremes: a genomic signature. S Karlin C Burge, Trends Genet 1995 11 283 290 10.1016/S0168-9525(00)89076-9 7482779
-
(1995)
Trends Genet
, vol.11
, pp. 283-290
-
-
Karlin, S.1
Burge, C.2
-
25
-
-
0037372775
-
The extent of codon usage bias in human RNA viruses and its evolutionary origin
-
DOI 10.1016/S0168-1702(02)00309-X, PII S016817020200309X
-
The extent of codon usage bias in human RNA viruses and its evolutionary origin. GM Jenkins EC Holmes, Virus Res 2003 92 1 7 10.1016/S0168-1702(02)00309- X 12606071 (Pubitemid 36253615)
-
(2003)
Virus Research
, vol.92
, Issue.1
, pp. 1-7
-
-
Jenkins, G.M.1
Holmes, E.C.2
-
26
-
-
78650849737
-
Analysis of codon usage in bovine viral diarrhea virus
-
10.1007/s00705-010-0848-0. 21069395
-
Analysis of codon usage in bovine viral diarrhea virus. M Wang J Zhang JH Zhou HT Chen LN Ma YZ Ding WQ Liu YS Liu, Arch Virol 2011 156 153 160 10.1007/s00705-010-0848-0 21069395
-
(2011)
Arch Virol
, vol.156
, pp. 153-160
-
-
Wang, M.1
Zhang, J.2
Zhou, J.H.3
Chen, H.T.4
Ma, L.N.5
Ding, Y.Z.6
Liu, W.Q.7
Liu, Y.S.8
-
27
-
-
1642412614
-
Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales
-
DOI 10.1016/j.virusres.2004.01.006, PII S0168170204000206
-
Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales. W Gu T Zhou J Ma X Sun Z Lu, Virus Res 2004 101 155 161 10.1016/j.virusres.2004.01.006 15041183 (Pubitemid 38369316)
-
(2004)
Virus Research
, vol.101
, Issue.2
, pp. 155-161
-
-
Gu, W.1
Zhou, T.2
Ma, J.3
Sun, X.4
Lu, Z.5
-
28
-
-
19444362139
-
Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses
-
DOI 10.1016/j.biosystems.2005.03.002, PII S0303264705000225
-
Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses. T Zhou W Gu J Ma X Sun Z Lu, Biosystems 2005 81 77 86 10.1016/j.biosystems.2005.03.002 15917130 (Pubitemid 40726202)
-
(2005)
BioSystems
, vol.81
, Issue.1
, pp. 77-86
-
-
Zhou, T.1
Gu, W.2
Ma, J.3
Sun, X.4
Lu, Z.5
-
29
-
-
0028826398
-
Individual variation in inbreeding depression: The roles of inbreeding history and mutation
-
8582625
-
Individual variation in inbreeding depression: the roles of inbreeding history and mutation. ST Schultz JH Willis, Genetics 1995 141 1209 1223 8582625
-
(1995)
Genetics
, vol.141
, pp. 1209-1223
-
-
Schultz, S.T.1
Willis, J.H.2
-
30
-
-
0023650543
-
The codon Adaptation Index - A measure of directional synonymous codon usage bias, and its potential applications
-
10.1093/nar/15.3.1281. 3547335
-
The codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. PM Sharp WH Li, Nucleic Acids Res 1987 15 1281 1295 10.1093/nar/15.3.1281 3547335
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
31
-
-
0034542564
-
The evolution of mutation rates: Separating causes from consequences
-
DOI 10.1002/1521-1878(200012)22:12<1057::AID-BIES3>3.0.CO;2-W
-
The evolution of mutation rates: separating causes from consequences. PD Sniegowski PJ Gerrish T Johnson A Shaver, Bioessays 2000 22 1057 1066 10.1002/1521-1878(200012)22:12<1057::AID-BIES3>3.0.CO;2-W 11084621 (Pubitemid 32010515)
-
(2000)
BioEssays
, vol.22
, Issue.12
, pp. 1057-1066
-
-
Sniegowski, P.D.1
Gerrish, P.J.2
Johnson, T.3
Shaver, A.4
-
32
-
-
0242320205
-
CpG DNA: Trigger of sepsis, mediator of protection, or both?
-
DOI 10.1080/00365540310015999
-
CpG DNA: trigger of sepsis, mediator of protection, or both? AM Krieg, Scand J Infect Dis 2003 35 653 659 10.1080/00365540310015999 14620150 (Pubitemid 37336888)
-
(2003)
Scandinavian Journal of Infectious Diseases
, vol.35
, Issue.9
, pp. 653-659
-
-
Krieg, A.M.1
-
33
-
-
0032760250
-
DNA methylation and the Epstein-Barr virus
-
DOI 10.1006/scbi.1999.0137
-
DNA methylation and the Epstein-Barr virus. RF Ambinder KD Robertson Q Tao, Semin Cancer Biol 1999 9 369 375 10.1006/scbi.1999.0137 10547345 (Pubitemid 29532863)
-
(1999)
Seminars in Cancer Biology
, vol.9
, Issue.5
, pp. 369-375
-
-
Ambinder, R.F.1
Robertson, K.D.2
Tao, Q.3
-
34
-
-
33748923860
-
Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity
-
DOI 10.1128/JVI.00738-06
-
Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity. S Mueller D Papamichail JR Coleman S Skiena E Wimmer, J Virol 2006 80 9687 9696 10.1128/JVI.00738-06 16973573 (Pubitemid 44435643)
-
(2006)
Journal of Virology
, vol.80
, Issue.19
, pp. 9687-9696
-
-
Mueller, S.1
Papamichail, D.2
Coleman, J.R.3
Skiena, S.4
Wimmer, E.5
|