Adaptive response and enlargement of dynamic range

Mathematical Biosciences and Engineering

Volumn 8, Issue 2, 2011, Pages 515-526

  Friedlander, Tamar ^a   Brenner, Naama ^b  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

^b TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

Author keywords

Adaptive response; Biological networks; Dynamic range; Feedback; Integral control; Signal processing

Indexed keywords

ION CHANNEL; MEMBRANE PROTEIN;

ADAPTATION; ANIMAL; BIOLOGICAL MODEL; CELL MEMBRANE; CHANNEL GATING; COMPUTER SIMULATION; CONFERENCE PAPER; HOMEOSTASIS; HUMAN; PHYSIOLOGY; SIGNAL TRANSDUCTION;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; CELL MEMBRANE; COMPUTER SIMULATION; HOMEOSTASIS; HUMANS; ION CHANNEL GATING; ION CHANNELS; MEMBRANE PROTEINS; MODELS, BIOLOGICAL; SIGNAL TRANSDUCTION;

EID: 79954998877     PISSN: 15471063     EISSN: 15510018     Source Type: Journal    
DOI: 10.3934/mbe.2011.8.515     Document Type: Conference Paper

References (28)

1. B. N. Kholodenko, Cell signaling dynamics in time and space, Nature Reviews Molecular Cell Biology, 7(2006), 165-176.
2. B. Wark, B. N. Lundstrom and A. Fairhall, Sensory adaptation, Current Opinion in Neurobiology, 17(2007), 423-429. (Pubitemid 47531945)
3. J. E. Keymer, R. G. Endres, M. Skoge, Y. Meir and N. S. Wingreen, Chemosensing in Escherichia coli: Two regimes of two-state receptors, Proceedings of the National Academy of Sciences, 103(2006), 1786-1791. (Pubitemid 43228771)
4. B. A. Mello and Y. Tu, Effects of adaptation in maintaining high sensitivity over a wide range of backgrounds for Escherichia coli chemotaxis, Biophysical Journal, 92(2007), 2329-2337. (Pubitemid 46536416)
5. C. H. Hansen, R. G. Endres and N. S. Wingreen, Chemotaxis in Escherichia coli: A molecular model for robust precise adaptation, PLoS Computational Biology, 4(2008), e1.
6. M. J. Tindall, S. L. Porter, P. K. Maini, G. Gaglia and J. P. Armitage, Overview of mathematical approaches used to model bacterial chemotaxis i: The single cell, Bulletin of Mathematical Biology, 70(2008), 1525-1569.
7. J. J. Tyson, K. C. Chen and B. Novak, Sniffers, buzzers, toggles and blinkers: Dynamics of regulatory and signaling pathways in the cell, Current Opinion in Cell Biology, 15(2003), 221-231. (Pubitemid 36332198)
8. M. Behar, N. Hao, H. G. Dohlman and T. C. Elston, Mathematical and computational analysis of adaptation via feedback inhibition in signal transduction pathways, Biophysical Journal, 93(2007), 806-821. (Pubitemid 47219774)
9. P. Francois and E. D. Siggia, A case study of evolutionary computation of biochemical adaptation, Physical Biology, 5(2008), 026009.
10. W. Ma, A. Trusina, H. El-Samad, W. A. Lim and C. Tang, Defining network topologies that can achieve biochemical adaptation, Cell, 138(2009), 760-773.
11. R. B. Bourret, K. A. Borkovich and M. I. Simon, Signal transduction pathways involving protein phosphorylation in prokaryotes, Annual Review of Biochemistry, 60(1991), 401-441.
12. E. N. Pugh Jr. and T. D. Lamb, Phototransduction in vertebrate rods and cones: Molecular mechanisms of amplification, recovery and light adaptation, in "Molecular Mechanisms of Visual Transduction", volume 3, 2000.
13. N. Barkai and S. Leibler, Robustness in simple biochemical networks, Nature, 387(1997), 913-917. (Pubitemid 27289593)
14. T. Friedlander and N. Brenner, Adaptive response by state-dependent inactivation, Proceedings of the National Academy of Sciences, 106(2009), 22558-22563.
15. S. Marom and I. B. Levitan, State-dependent inactivation of Kv3 potassium channels, Journal of Biophysics, 67(1994), 579-589. (Pubitemid 24235386)
16. T. M. Yi, Y. Huang, M. I. Simon and J. Doyle, Robust perfect adaptation in bacterial chemotaxis through integral feedback control, Proceedings of the National Academy of Sciences, 97(2000), 4649-4653. (Pubitemid 30238612)
17. A. Csikász-Nagy and O. S. Soyer, Adaptive dynamics with a single two-state protein, Journal of The Royal Society Interface, 5(2008), S41-S47. (Pubitemid 351915289)
18. K. Ogata, "Modern Control Engineering", Prentice Hall, fourth edition, 2002.
19. P. Dunten and D. E. Koshland Jr., Tuning the responsiveness of a sensory receptor via covalent modifications, Journal of Biological Chemistry, 266(1991), 1491-1496. (Pubitemid 21908329)
20. T. C. Terwilliger, J. Y. Wang and D. E. Koshland Jr., Kinetics of receptor modification, Journal of Biological Chemistry, 261(1986), 10814-10820.
21. S. Asakura and H. Honda, Two-state model for bacterial chemoreceptor proteins: The role of multiple methylation, Journal of Molecular Biology, 176(1984), 349-367. (Pubitemid 16223380)
22. M. N. Levit and J. B. Stock, Receptor methylation controls the magnitude of stimulus-response coupling in bacterial chemotaxis, Journal of Biological Chemistry, 277(2002), 36760-36765.
23. Y. Tu, T. S. Shimizu and J. C. Berg, Modeling the chemotactic response of E. coli to timevarying stimuli, Proceedings of the National Academy of Sciences, 105(2008), 14855-14860.
24. G. L. Hazelbauer, J. J. Falke and J. S. Parkinson, Bacterial chemoreceptors: Highperformance signaling in networked arrays, Trends in Biochemical Sciences, 33(2008), 9-19.
25. V. Sourjik and H. C. Berg, Receptor sensitivity in bacterial chemotaxis, Proceedings of the National Academy of Sciences, 99(2002), 123-127. (Pubitemid 34060327)
26. R. A. Normann and I. Perlman, The effects of background illumination on the photoresponse of red and green cones, Journal of Physiology, 286(1979), 491-507. (Pubitemid 9085498)
27. A. Lupas and J. Stock, Phosphorylation of an N-terminal regulatory domain activates the CheB methylesterase in bacterial chemotaxis, Journal of Biological Chemistry, 264(1989), 17337-17342. (Pubitemid 19255565)
28. S. A. Simms, A. M. Stock and J. B. Stock, Purification and characterization of the S-adenosylmethionine: Glutamyl methyltransferase that modifies membrane chemoreceptor proteins in bacteria, Journal of Biological Chemistry, 262(1987), 8537-8543.