Effects of repeatability measures on results of fMRI sICA: A study on simulated and real resting-state effects

NeuroImage

Volumn 56, Issue 2, 2011, Pages 554-569

  Remes, Jukka J ^a,b   Starck, Tuomo ^a   Nikkinen, Juha ^a   Ollila, Esa ^b,e   Beckmann, Christian F ^c,d   Tervonen, Osmo ^a   Kiviniemi, Vesa ^a   Silven, Olli ^b  

^a OULU UNIVERSITY HOSPITAL   (Finland)

^b UNIVERSITY OF OULU   (Finland)

^c IMPERIAL COLLEGE LONDON   (United Kingdom)

^d UNIVERSITY OF OXFORD   (United Kingdom)

^e AALTO UNIVERSITY   (Finland)

Author keywords

BOLD; Bootstrapping; Clustering; FastICA; FMRI; ICASSO; Repeatability analysis; Resting state

Indexed keywords

ACCURACY; ADULT; ARTICLE; ARTIFICIAL NEURAL NETWORK; BOOTSTRAPPING; CONTROLLED STUDY; DATA ANALYSIS; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HIGH FREQUENCY OSCILLATION; HUMAN; INDEPENDENT COMPONENT ANALYSIS; INTERMETHOD COMPARISON; MALE; PERFORMANCE MEASUREMENT SYSTEM; POWER OF A TEST; PRIORITY JOURNAL; REPEAT PROCEDURE; SPATIAL INDEPENDENT COMPONENT ANALYSIS; STATISTICAL MODEL; SUPPORT VECTOR MACHINE;

ADULT; BRAIN; BRAIN MAPPING; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MALE;

EID: 79954995139     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2010.04.268     Document Type: Article

References (42)

1. Abou-Elseoud A., Starck T., Remes J., Nikkinen J., Tervonen O., Kiviniemi V. The effect of model order selection in group pica. Hum. Brain Mapp. Jan 2010, (Electronic publication ahead of print) URL http://dx.doi.org/10.1002/hbm.20929.
2. Amari S.-I., Cichocki A., Yang H. A new learning algorithm for blind source separation. Adv. in Neural Inf. Process. Syst. 1996, 8:757-763.
3. Beckmann C.F., Smith S.M. Probabilistic independent component analysis for functional magnetic resonance imaging. IEEE Trans. Med. Imaging Feb 2004, 23(2):137-152. URL http://dx.doi.org/10.1109/TMI.2003.822821.
4. Calhoun V.D., Liu J., Adali T. A review of group ica for fmri data and ica for joint inference of imaging, genetic, and erp data. Neuroimage Mar 2009, 45(1 Suppl):S163-S172. URL http://dx.doi.org/10.1016/j.neuroimage.2008.10.057.
5. Cardoso J.-F. Multidimensional independent component analysis 1998, Proc. Int. Workshop on Higher-Order Stat, In, pp. 111-120.
6. Daubechies I., Roussos E., Takerkart S., Benharrosh M., Golden C., D'Ardenne K., Richter W., Cohen J.D., Haxby J. Independent component analysis for brain fmri does not select for independence. Proc Natl Acad Sci U S A Jun 2009, 106(26):10415-10422. URL http://dx.doi.org/10.1073/pnas.0903525106.
7. Demirci O., Stevens M.C., Andreasen N.C., Michael A., Liu J., White T., Pearlson G.D., Clark V.P., Calhoun V.D. Investigation of relationships between fmri brain networks in the spectral domain using ica and granger causality reveals distinct differences between schizophrenia patients and healthy controls. Neuroimage Jun 2009, 46(2):419-431. URL http://dx.doi.org/10.1016/j.neuroimage.2009.02.014.
8. Douglas S.C. Fixed-point algorithms for the blind separation of arbitrary complex-valued non-gaussian signal mixtures. EURASIP J. Appl. Signal Process. 2007, 2007(1):83.
9. Esposito F., Aragri A., Latorre V., Popolizio T., Scarabino T., Cirillo S., Marciano E., Tedeschi G., Salle F.D. Does the default-mode functional connectivity of the brain correlate with working-memory performances?. Arch. Ital. Biol. Mar 2009, 147(1-2):11-20.
10. Filippini N., MacIntosh B.J., Hough M.G., Goodwin G.M., Frisoni G.B., Smith S.M., Matthews P.M., Beckmann C.F., Mackay C.E. Distinct patterns of brain activity in young carriers of the apoe-epsilon4 allele. Proc Natl Acad Sci U S A Apr 2009, 106(17):7209-7214. URL http://dx.doi.org/10.1073/pnas.0811879106.
11. Fox M.D., Zhang D., Snyder A.Z., Raichle M.E. The global signal and observed anticorrelated resting state brain networks. J. Neurophysiol. Jun 2009, 101(6):3270-3283. URL http://dx.doi.org/10.1152/jn.90777.2008.
12. Greicius M.D., Flores B.H., Menon V., Glover G.H., Solvason H.B., Kenna H., Reiss A.L., Schatzberg A.F. Resting-state functional connectivity in major depression: abnormally increased contributions from subgenual cingulate cortex and thalamus. Biol. Psychiatry Sep 2007, 62(5):429-437. URL http://dx.doi.org/10.1016/j.biopsych.2006.09.020.
13. Himberg J., Hyvärinen A., Esposito F. Validating the independent components of neuroimaging time series via clustering and visualization. Neuroimage Jul 2004, 22(3):1214-1222. URL http://dx.doi.org/10.1016/j.neuroimage.2004.03.027.
14. Hyvarinen A. Fast and robust fixed-point algorithms for independent component analysis. IEEE Trans. Neural Netw. 1999, 10(3):626-634. URL http://dx.doi.org/10.1109/72.761722.
15. Jenkinson M., Bannister P., Brady M., Smith S. Improved optimization for the robust and accurate linear registration and motion correction of brain images. Neuroimage Oct 2002, 17(2):825-841.
16. Karvanen J., Koivunen V. Blind separation methods based on pearson system and its extensions. Signal Process. 2002, 82(4):663-673.
17. Karvanen J., Theis F. Spatial ICA of fMRI data in time windows. Proc. MaxEnt 2004. Vol. 735 of AIP conference proceedings. Garching, Germany 2004, 312-319. URL http://www.biologie.uni-regensburg.de/Biophysik/Theis/publications/karvanen04windowfmri_MaxEnt04.pdf.
18. Kim D.I., Mathalon D.H., Ford J.M., Mannell M., Turner J.A., Brown G.G., Belger A., Gollub R., Lauriello J., Wible C., O'Leary D., Lim K., Toga A., Potkin S.G., Birn F., Calhoun V.D. Auditory oddball deficits in schizophrenia: an independent component analysis of the fmri multisite function birn study. Schizophr. Bull. Jan 2009, 35(1):67-81. URL http://dx.doi.org/10.1093/schbul/sbn133.
19. Kim D.I., Manoach D.S., Mathalon D.H., Turner J.A., Mannell M., Brown G.G., Ford J.M., Gollub R.L., White T., Wible C., Belger A., Bockholt H.J., Clark V.P., Lauriello J., O'Leary D., Mueller B.A., Lim K.O., Andreasen N., Potkin S.G., Calhoun V.D. Dysregulation of working memory and default-mode networks in schizophrenia using independent component analysis, an fbirn and mcic study. Hum. Brain Mapp. May 2009, 30(11):3795-3811. URL http://dx.doi.org/10.1002/hbm.20807.
20. Kiviniemi V., Remes J., Starck T., Nikkinen J., Haapea M., Silven O., Tervonen O. Mapping transient hyperventilation induced alterations with estimates of the multi-scale dynamics of bold signal. Front Neuroinformatics 2009, 3:18. URL http://dx.doi.org/10.3389/neuro.11.018.2009.
21. Kiviniemi V., Starck T., Remes J., Long X., Nikkinen J., Haapea M., Veijola J., Moilanen I., Isohanni M., Zang Y.-F., Tervonen O. Functional segmentation of the brain cortex using high model order group pica. Hum. Brain Mapp. Jun 2009, 30(12):3865-3886. URL http://dx.doi.org/10.1002/hbm.20813.
22. Kokkonen S.-M., Nikkinen J., Remes J., Kantola J., Starck T., Haapea M., Tuominen J., Tervonen O., Kiviniemi V. Preoperative localization of the sensorimotor area using independent component analysis of resting-state fmri. Magn. Reson. Imaging Jul 2009, 27(6):733-740. URL http://dx.doi.org/10.1016/j.mri.2008.11.002.
23. McKeown M.J., Makeig S., Brown G.G., Jung T.P., Kindermann S.S., Bell A.J., Sejnowski T.J. Analysis of fmri data by blind separation into independent spatial components. Hum. Brain Mapp. 1998, 6(3):160-188.
24. Meda S.A., Calhoun V.D., Astur R.S., Turner B.M., Ruopp K., Pearlson G.D. Alcohol dose effects on brain circuits during simulated driving: an fmri study. Hum. Brain Mapp. Apr 2009, 30(4):1257-1270. URL http://dx.doi.org/10.1002/hbm.20591.
25. Menz M.M., McNamara A., Klemen J., Binkofski F. Dissociating networks of imitation. Hum. Brain Mapp. Apr 2009, 30(10):3339-3350. URL http://dx.doi.org/10.1002/hbm.20756.
26. Mohammadi B., Kollewe K., Samii A., Krampfl K., Dengler R., Münte T.F. Changes of resting state brain networks in amyotrophic lateral sclerosis. Exp. Neurol. May 2009, 217(1):147-153. URL http://dx.doi.org/10.1016/j.expneurol.2009.01.025.
27. Murphy K., Birn R.M., Handwerker D.A., Jones T.B., Bandettini P.A. The impact of global signal regression on resting state correlations: are anti-correlated networks introduced?. Neuroimage Feb 2009, 44(3):893-905. URL http://dx.doi.org/10.1016/j.neuroimage.2008.09.036.
28. Ollila E. On the robustness of the deflation-based fastica estimator. Proc. IEEE/SP 15th Workshop on Statistical Signal Processing SSP '09 Aug. 2009, 673-676.
29. Raichle M.E., Mintun M.A. Brain work and brain imaging. Annu. Rev. Neurosci. 2006, 29:449-476.
30. Rombouts S.A.R.B., Damoiseaux J.S., Goekoop R., Barkhof F., Scheltens P., Smith S.M., Beckmann C.F. Model-free group analysis shows altered bold fmri networks in dementia. Hum. Brain Mapp. Jan 2009, 30(1):256-266. URL http://dx.doi.org/10.1002/hbm.20505.
31. Smith S.M. Fast robust automated brain extraction. Hum. Brain Mapp. Nov 2002, 17(3):143-155. URL http://dx.doi.org/10.1002/hbm.10062.
32. Smith S.M., Fox P.T., Miller K.L., Glahn D.C., Fox P.M., Mackay C.E., Filippini N., Watkins K.E., Toro R., Laird A.R., Beckmann C.F. Correspondence of the brain's functional architecture during activation and rest. Proc Natl Acad Sci U S A Aug 2009, 106(31):13040-13045. URL http://dx.doi.org/10.1073/pnas.0905267106.
33. Stone J.V., Porrill J., Porter N.R., Wilkinson I.D. Spatiotemporal independent component analysis of event-related fmri data using skewed probability density functions. Neuroimage Feb 2002, 15(2):407-421. URL http://dx.doi.org/10.1006/nimg.2001.0986.
34. Suzuki K., Kiryu T., Nakada T. Fast and precise independent component analysis for high field fmri time series tailored using prior information on spatiotemporal structure. Hum. Brain Mapp. Jan 2002, 15(1):54-66.
35. van de Ven V., Esposito F., Christoffels I.K. Neural network of speech monitoring overlaps with overt speech production and comprehension networks: a sequential spatial and temporal ica study. Neuroimage Oct 2009, 47(4):1982-1991. URL http://dx.doi.org/10.1016/j.neuroimage.2009.05.057.
36. Wu X., Lu J., Chen K., Long Z., Wang X., Shu H., Li K., Liu Y., Yao L. Multiple neural networks supporting a semantic task: an fmri study using independent component analysis. Neuroimage May 2009, 45(4):1347-1358. URL http://dx.doi.org/10.1016/j.neuroimage.2008.12.050.
37. Yang Z., LaConte S., Weng X., Hu X. Ranking and averaging independent component analysis by reproducibility (raicar). Hum. Brain Mapp. Jun 2008, 29(6):711-725. URL http://dx.doi.org/10.1002/hbm.20432.
38. Ylipaavalniemi J., Soppela J. Arabica: robust ica in a pipeline. ICA '09: Proceedings of the 8th International Conference on Independent Component Analysis and Signal Separation 2009, 379-386. Springer-Verlag, Berlin, Heidelberg.
39. Ylipaavalniemi J., Vigario R. Analyzing consistency of independent components: an fmri illustration. Neuroimage Jan 2008, 39(1):169-180. URL http://dx.doi.org/10.1016/j.neuroimage.2007.08.027.
40. Zarzoso V., Comon P. Robust independent component analysis for blind source separation and extraction with application in electrocardiography. Proc. 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society EMBS 2008 Aug. 20-25, 2008, 3344-3347.
41. Zhang Z., Lu G., Zhong Y., Tan Q., Yang Z., Liao W., Chen Z., Shi J., Liu Y. Impaired attention network in temporal lobe epilepsy: a resting fmri study. Neurosci. Lett. Jul 2009, (3):97-101. URL http://dx.doi.org/10.1016/j.neulet.2009.04.040.
42. Zhang Z., Lu G., Zhong Y., Tan Q., Liao W., Chen Z., Shi J., Liu Y. Impaired perceptual networks in temporal lobe epilepsy revealed by resting fmri. J Neuro Jun 2009, URL http://dx.doi.org/10.1007/s00415-009-5187-2.