Functional segmentation of the brain cortex using high model order group PICA

Human Brain Mapping

Volumn 30, Issue 12, 2009, Pages 3865-3886

  Kiviniemi, Vesa ^a   Starck, Tuomo ^a   Remes, Jukka ^a   Long, Xiangyu ^a,b   Nikkinen, Juha ^a   Haapea, Marianne ^a,c   Veijola, Juha ^b,d   Moilanen, Irma ^a   Isohanni, Matti ^c   Zang, Yu Feng ^b   Tervonen, Osmo ^a  

^a OULU UNIVERSITY HOSPITAL   (Finland)

^b BEIJING NORMAL UNIVERSITY   (China)

^c UNIVERSITY OF OULU   (Finland)

^d ACADEMY OF FINLAND   (Finland)

Author keywords

Brain cortex; fMRI; ICA; Resting state

Indexed keywords

ADULT; ARTICLE; BRAIN CORTEX; BRAIN FUNCTION; CONTROLLED STUDY; FEMALE; HUMAN; HUMAN EXPERIMENT; INDEPENDENT COMPONENT ANALYSIS; MALE; OXYGEN BLOOD LEVEL; PRIORITY JOURNAL; RESTING STATE BRAIN NETWORK; SIGNAL DETECTION;

ADULT; BRAIN; BRAIN MAPPING; FEMALE; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MALE; PRINCIPAL COMPONENT ANALYSIS;

EID: 71849111554     PISSN: 10659471     EISSN: None     Source Type: Journal    
DOI: 10.1002/hbm.20813     Document Type: Article

References (54)

1. Bartels A, Zeki S (2005): The chronoarchitecture of the cerebral cortex. Philos Trans R Soc Lond B Biol Sci 360:733-750.
2. Beckmann CF, Smith SM (2004): Probabilistic independent component analysis for functional magnetic resonance imaging. IEEE Trans Med Imaging 23:137-152.
3. Beckmann CF, DeLuca M, Devlin JT, Smith SM (2005): Investigations into resting-state connectivity using independent component analysis. Philos Trans R Soc Lond B Biol Sci 360:1001-1013. (Pubitemid 41672861)
4. Biswal BB, Yetkin FZ, Haughton VM, Hyde JS (1995): Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med 34:537-541.
5. Birn RM, Diamond JB, Smith MA, Bandettini PA. (2006): Separating respiratory-variation-related fluctuations from neuronal-activity- related fluctuations in fMRI. Neuroimage 31:1536-1548.
6. Boly M, Balteau E, Schnakers C, Degueldre C, Moonen G, Luxen A, Phillips C, Peigneux P, Maquet P, Laureys S (2007): Baseline brain activity fluctuations predict somatosensory perception in humans. Proc Natl Acad Sci USA 104:12187-12192. (Pubitemid 47185651)
7. Calhoun VD, Adali T, Pearlson GD, Pekar JJ (2001): A method for making group inferences from functional MRI data using independent component analysis. Hum Brain Mapp 14:140-151. (Pubitemid 33032347)
8. Calhoun VD, Adali T, Pekar JJ, Pearlson GD (2003): Latency (in)sensitive ICA. Group independent component analysis of fMRI data in the temporal frequency domain. Neuroimage 20:1661-1669
9. Calhoun VD, Kiehl KA, Pearlson GD (2008): Modulation of temporally coherent brain networks estimated using ICA at rest and during cognitive tasks. Hum Brain Mapp 29:828-838.
10. Cohen AL, Fair DA, Dosenbach NU, Miezin FM, Dierker D, Van Essen DC, Schlaggar BL, Petersen SE (2008): Defining functional areas in individual human brains using resting functional connectivity MRI. NeuroImage 41:45-57.
11. Damoiseaux JS, Rombouts SA, Barkhof F, Scheltens P, Stam CJ, Smith SM, Beckmann CF (2006): Consistent resting-state networks across healthy subjects. Proc Natl Acad Sci USA 103:13848-13853. (Pubitemid 44413996)
12. De Martino F, Gentile F, Esposito F, Balsi M, Di Salle F, Goebel R, Formisano E (2007): Classification of fMRI independent components using IC-fingerprints and support vector machine classifiers. NeuroImage 34:177-194. (Pubitemid 44765254)
13. De Luca M, Beckmann CF, De Stefano N, Matthews PM, Smith SM (2006): fMRI resting state networks define distinct modes of long-distance interactions in the human brain. Neuroimage 29:1359-1367. (Pubitemid 43184199)
14. Di Martino A, Scheres A, Margulies DS, Kelly AM, Uddin LQ, Shehzad Z, Biswal B, Walters JR, Castellanos FX, Milham MP (2008): Functional connectivity of human striatum: A resting state fMRI study. Cereb Cortex 18:2735-2747.
15. Eichele T, Debener S, Calhoun VD, Specht K, Engel AK, Hugdahl K, von Cramon DY, Ullsperger M (2008): Prediction of human errors by maladaptive changes in event-related brain networks. Proc Natl Acad Sci 105:6173-6178. (Pubitemid 351758418)
16. Eickhoff SB, Paus T, Caspers S, Grosbras MH, Evans AC, Zilles K, Amunts K (2007): Assignment of functional activations to probabilistic cytoarchitectonic areas revisited. NeuroImage 36:511-521. (Pubitemid 46907638)
17. Fox MD, Raichle ME (2007): Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat Rev Neurosci 8:700-711. (Pubitemid 47283145)
18. Fox MD, Snyder AZ, Zacks JM, Raichle ME (2006): Coherent spontaneous activity accounts for trial-to-trial variability in human evoked brain responses. Nat Neurosci 9:23-25.
19. Fukunaga M, Horovitz SG, de Zwart JA, van Gelderen P, Balkin TJ, Braun AR, Duyn JH (2008): Metabolic origin of BOLD signal fluctuations in the absence of stimuli. J Cereb Blood Flow Metab 28:1377-1387. (Pubitemid 351896648)
20. Greicius MD, Srivastava G, Reiss AL, Menon V (2004): Defaultmode network activity distinguishes Alzheimer's disease from healthy aging: Evidence from functional MRI. Proc Natl Acad Sci USA 101:4637-4642. (Pubitemid 38437463)
21. Greicius MD, Flores BH, Menon V, Glover GH, Solvason HB, Kenna H, Reiss AL, Schatzberg AF (2007): Resting-state functional connectivity in major depression: Abnormally increased contributions from subgenual cingulate cortex and thalamus. Biol Psychiatry 62:429-437. (Pubitemid 47284017)
22. Himberg J, Hyvärinen A, Esposito F (2004): Validating the independent components of neuroimaging time series via clustering and visualization. Neuroimage 22:1214-1222. (Pubitemid 38829210)
23. Hyvärinen A (1999): Fast and robust fixed-point algorithms for independent component analysis. IEEE Trans Neural Networks 10:626-634.
24. Jafri MJ, Pearlson GD, Stevens M, Calhoun VD (2008): A method for functional network connectivity among spatially independent resting-state components in schizophrenia. Neuroimage 39:1666-1681.
25. Jenkinson M, Bannister PR, Brady JM, Smith SM (2002): Improved optimisation for the robust and accurate linear registration and motion correction of brain images. NeuroImage 17:825-841. (Pubitemid 35317016)
26. Kannurpatti SS, Biswal BB, Kim YR, Rosen BR (2008): Spatio temporal characteristics of low frequency BOLD signal fluctuations in isoflurane anesthetized rat brain. NeuroImage 40:1738-1747.
27. Kenet T, Bibitchkov D, Tsodyks M, Grinvald A, Arieli A (2003): Spontaneously emerging cortical representations of visual attributes. Nature 425:954-956. (Pubitemid 37376925)
28. Kiviniemi V (2008): Endogenous brain fluctuations and diagnostic imaging. Hum Brain Mapp 29:810-817 (Review).
29. Kiviniemi V, Kantola J-H, Jauhiainen J, Hyvärinen A, Tervonen O (2003): Independent component analysis of non-deterministic fMRI signal sources. NeuroImage 19:253-260. (Pubitemid 39665677)
30. Li YO, Adali T, Calhoun VD (2007): Estimating the number of independent components for functional magnetic resonance imaging data. Hum Brain Mapp 11:1251-1266. (Pubitemid 350077488)
31. Logothetis NK, Pauls J, Augath M, Trinath T, Oelterman A (2001): Neurophysiological investigation of the basis of the fMRI signal. Nature 412:150-157. (Pubitemid 32674704)
32. Long XY, Zuo XN, Kiviniemi V, Yang Y, Zou QH, Zhu CZ, Jiang TZ, Yang H, Gong QY, Wang L, Li KC, Xie S, Zang YF (2008): Default mode network as revealed with multiple methods for resting-state functional MRI analysis. J Neurosci Methods 171:349-355.
33. Longcamp M, Anton JL, Roth M, Velay JL (2005): Premotor activations in response to visually presented single letters depend on the hand used to write: A study on left-handers. Neuropsychologia 43:1801-1809. (Pubitemid 41266004)
34. Lund TE, Madsen KH, Sidaros K, Luo WL, Nichols TE (2006): Non-white noise in fMRI: Does modelling have an impact?- Neuroimage 29:54-66.
35. Ma L, Wang B, Chen X, Xiong J (2007): Detecting functional connectivity in the resting brain: A comparison between ICA and CCA. Magn Reson Imaging 25:47-56. (Pubitemid 46048946)
36. Malinen S, Hlushchuk Y, Hari R (2007): Towards natural stimulation in fMRI - Issues of data analysis. NeuroImage 35:131-139. (Pubitemid 46242200)
37. Mantini D, Perrucci MG, Del Gratta C, Romani GL, Corbetta M (2007): Electrophysiological signatures of resting state networks in the human brain. Proc Natl Acad Sci USA 104: 13170-13175. (Pubitemid 351737611)
38. McAvoy M, Larson-Prior L, Nolan TS, Vaishnavi SN, Raichle ME, d'Avossa G (2008)Resting states affect spontaneous BOLD oscillations in sensory and paralimbic cortex. J Neurophysiol 100:922-931.
39. McKeown MJ, Jung TP, Makeig S, Brown G, Kindermann SS, Lee TW, Sejnowski TJ (1998): Spatially independent activity patterns in functional MRI data during the stroop color-naming task. Proc Natl Acad Sci USA 95:803-810. (Pubitemid 28124871)
40. McKeown MJ, Varadarajan V, Huettel S, McCarthy G (2002): Deterministic and stochastic features of fMRI data: Implications for analysis of event-related experiments. J Neurosci Methods 118:103-113. (Pubitemid 36151631)
41. Mezer A, Yovel Y, Pasternak O, Gorfine T, Assaf Y (2009): Cluster analysis of resting-state fMRI time series. Neuroimage 45:1117-1125.
42. Murphy K, Birn RM, Handwerker DA, Jones TB, Bandettini PA (2009): The impact of global signal regression on resting state correlations: Are anti-correlated networks introduced?Neuroimage 44:893-905.
43. Pawela CP, Biswal BB, Cho YR, Kao DS, Li R, Jones SR, Schulte ML, Matloub HS, Hudetz AG, Hyde JS (2008): Resting-state functional connectivity of the rat brain. Magn Reson Med 59:1021-1029. (Pubitemid 351590515)
44. Pelled G, Goelman G (2004): Different physiological MRI noise between cortical layers. Magn Res Med 52:913-916 (Pubitemid 39314997)
45. Salvador R, Suckling J, Coleman MR, Pickard JD, Menon D, Bullmore E (2005): Neurophysiological architecture of functional magnetic resonance images of human brain. Cereb Cortex 15:1332-1342. (Pubitemid 41191541)
46. Schmidhorst VJ, Holland SK (2004): Comparison of three methods for generating group statistical inferences from independent component analysis of functional magnetic resonance imaging data. J Magn Reson Imaging 19:365-368.
47. Shmuel A, Leopold DA (2008): Neuronal correlates of spontaneous fluctuations in fMRI signals in monkey visual cortex: Implications for functional connectivity at rest. Hum Brain Mapp 29:751-761. (Pubitemid 351813076)
48. Smith SM (2002): Fast robust automated brain extraction. Hum Brain Mapp 17:143-155.
49. Sorg C, Riedl V, Mühlau M, Calhoun VD, Eichele T, Läer L, Drzezga A, Förstl H, Kurz A, Zimmer C, Wohlschläger AM (2007): Selective changes of resting-state networks in individuals at risk for Alzheimer's disease. Proc Natl Acad Sci USA 104:18760-18765. (Pubitemid 350210770)
50. Sridharan D, Levitin DJ, Menon V (2008): A critical role for the right fronto-insular cortex in switching between central-executive and default mode networks. Proc Natl Acad Sci USA 105:12569-12574.
51. Tohka J, Foerde K, Aron AR, Tom SM, Toga AW, Poldrack RA (2008): Automatic independent component labeling for artifact removal in fMRI. Neuroimage 39:1227-1245.
52. Uddin LQ, Clare Kelly AM, Biswal BB, Xavier Castellanos F, Milham MP (2009): Functional connectivity of default mode network components: Correlation, anticorrelation, and causality. Hum Brain Mapp 30:625-637.
53. van de Ven VG, Formisano E, Prvulovic D, Roeder CH, Linden DE (2004): Functional connectivity as revealed by spatial independent component analysis of fMRI measurements during rest. Hum Brain Mapp 22:165-178. (Pubitemid 38890996)
54. Vincent JL, Patel GH, Fox MD, Snyder AZ, Baker JT, Van Essen DC, Zempel JM, Snyder LH, Corbetta M, Raichle ME (2007): Intrinsic functional architecture in the anaesthetized monkey brain. Nature 447:83-86. (Pubitemid 46685840)