Automated analysis of mouse serum peptidome using restricted access media and nanoliquid chromatography-tandem mass spectrometry

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 879, Issue 15-16, 2011, Pages 1112-1120

  Gil, Geun Cheol ^a   Brennan, Jim ^a   Throckmorton, Dan J ^a   Branda, Steven S ^a   Chirica, Gabriela S ^a  

^a SANDIA NATIONAL LABORATORIES   (United States)

Author keywords

Automation; LC MSMS; Mouse; On line processing; Peptidomics; Proteomics; Restricted access media; Serum

Indexed keywords

LC-MSMS; MOUSE; ON-LINE PROCESSING; PEPTIDOMICS; PROTEOMICS; RESTRICTED ACCESS MEDIAS; SERUM;

AUTOMATION; CHROMATOGRAPHIC ANALYSIS; CHROMATOGRAPHY; FRACTIONATION; MASS SPECTROMETERS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; MOLECULAR WEIGHT; OPTICAL PROJECTORS; PEPTIDES;

BODY FLUIDS;

TRYPSIN;

ARTICLE; AUTOMATION; FRACTIONATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MOUSE; NONHUMAN; PEPTIDE ANALYSIS; PEPTIDOMICS; PRIORITY JOURNAL; PROTEIN PROCESSING; PROTEOMICS; TANDEM MASS SPECTROMETRY;

ANALYSIS OF VARIANCE; ANIMALS; AUTOMATION; BLOOD PROTEINS; CHROMATOGRAPHY, REVERSE-PHASE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HIGH-THROUGHPUT SCREENING ASSAYS; MICE; NANOTECHNOLOGY; PEPTIDE FRAGMENTS; PROTEOMICS; REPRODUCIBILITY OF RESULTS; TANDEM MASS SPECTROMETRY; TRYPSIN;

EID: 79954990317     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2011.03.028     Document Type: Article

References (40)

1. Baggerman G.V., Cleynen P., Huybrechts E., De Loof J., Schoofs A.L. J. Chromatogr. B 2004, 803:3.
2. Fälth M., Sköld K., Norrman M., Svensson M., Fenyö D., Andren P.E. Mol. Cell. Proteom. 2006, 5:998.
3. Schrader M., Schulz-Knappe P. Trends Biotechnol. 2001, 19:S55.
4. Svensson M.S., Svenningsson K., Andren P.P.E. J. Proteome Res. 2003, 2:213.
5. Chertov O., Simpson J.T., Biragyn A., Conrads T.P., Veenstra T.D., Fisher R.J. Expert Rev. Proteom. 2005, 2:139.
6. Fricker L.D., Lim J., Pan H., Che F.-Y. Mass Spectrom. Rev. 2006, 25:327.
7. Liotta L.A., Petricoin E.F. J. Clin. Invest. 2006, 116:26.
8. Strand F.L. Prog. Drug Res. 2003, 61:1.
9. Anderson N.L., Anderson N.G. Mol. Cell. Proteom. 2002, 1:845.
10. Merrell K., Southwick K., Graves S.W., Esplin M.S., Lewis N.S., Thulin C.D. J. Biomol. Technol. 2004, 15:238.
11. Villanueva J., Martorella A.J., Lawlor K., Philip J., Fleisher M., Robbins R.J., Tempst P. Mol. Cell. Proteom. 2006, 5:1840.
12. Villanueva J., Shaffer D.R., Philip J., Chaparro C.A., Erdjument-Bromage H., Olshen A.B., Fleisher M., Lilja H., Brogi E., Boyd J., Sanchez-Carbayo M., Holland E.C., Cordon-Cardo C., Scher H.I., Tempst P. J. Clin. Invest. 2006, 116:271.
13. Mian S., Ugurel S., Parkinson E., Schlenzka I., Dryden I., Lancashire L., Ball G., Creaser C., Rees R., Schadendorf D. J. Clin. Oncol. 2005, 23:5088.
14. Robbins R.J., Villanueva J., Tempst P. J. Clin. Oncol. 2005, 23:4835.
15. Berven F.S., Kroksveen A.C., Berle M., Rajalahti T., Flikka K., Arneberg R., Myhr K.M., Vedeler C., Kvalheim O.M., Ulrik R.J. Proteom. Clin. Appl. 2007, 1:699.
16. Camerini S., Polci M.L., Liotta L.A., Petricoin E.F., Zhou W. Proteom. Clin. Appl. 2007, 1:176.
17. Aristoteli L.P., Molloy M.P., Baker M.S. J. Proteome Res. 2007, 6:571.
18. Baeyens W.R.G., Van der Weken G., Smet E., García-Campaña A.M., Remon J.P. J. Pharm. Biomed. Anal. 2003, 32:913.
19. Cassiano N.M., Lima V.V., Oliveira R.V., Pietro A.C.d., Cass Q.B. Anal. Bioanal. Chem. 2006, 384:1462.
20. Kishida K., Furusawa N. J. Chromatogr. A 2004, 1028:175.
21. Rudolphi A.B., Boos K.S. LC-GC 1997, 15:814.
22. Wagner K., Miliotis T., Marko-Varga G., Bischoff R., Unger K.K. Anal. Chem. 2002, 74:809.
23. Hu L., Boos K.-S., Ye M., Wu R.a., Zou H. J Chromatogr. A 2009, 1216:5377.
24. Machtejevas E., Andracht S., Lubda D., Unger K.K. J. Chromatogr. A 2007, 1144:97.
25. Chirica G., Lachmann J., Chan J. Anal. Chem. 2006, 78:5362.
26. Stachowiak J.C., Shugard E.E., Mosier B.P., Renzi R.F., Caton P.F., Ferko S.M., Van der Vreugde J.L., Yee D.D., Haroldsen B.L., Vandernoot V.A. Anal. Chem. 2007, 79:5763.
27. Vandernoot V.A., Renzi R.F., Mosier B.P., Van de Vreugde J.L., Shokair I., Haroldsen B.L. Electrophoresis 2010, 31:2632.
28. R.F. Renzi, Microvalve, patent number 6,918,573, application number 10/351,714, 2005.
29. R.F. Renzi, Microfluidics prototyping platform and components, US 2006/0171852 A1, application number 11/049,378, 2006.
30. Keller A., Nesvizhskii A.I., Kolker E., Aebersold R. Anal. Chem. 2002, 74:5383.
31. Nesvizhskii A.I., Keller A., Kolker E., Aebersold R. Anal. Chem. 2003, 75:4646.
32. Zheng X., Baker H., Hancock W.S. J. Chromatogr. A 2006, 1120:173.
33. Liu H., Sadygov R.G., J.R.Y. Anal. Chem. 2004, 76:4193.
34. Shen Y., Jacobs J.M., D.G.C., Fang R., Moore R.J., Smith R.D., Xiao W., Davis R.W., Tompkins R.G. Anal. Chem. 2004, 76:1134.
35. Chang B., Khanna H., Hawes N., Jimeno D., He S., Lillo C., Parapuram S.K., Cheng H., Scott A., Hurd R.E., Sayer J.A., Otto E.A., Attanasio M., O'Toole J.F., Jin G., Shou C., Hildebrandt F., Williams D.S., Heckenlively J.R., Swaroop A. Hum. Mol. Genet. 2006, 15:1847.
36. Wright A.F., Bulfield G., Arfin S.M., Kacser H. Biochem. Genet. 1982, 20:245.
37. Araki R., Fujimori A., Hamatani K., Mita K., Saito T., Mori M., Fukumura R., Morimyo M., Muto M., Itoh M., Tatsumi K., Abe M. Proc. Natl. Acad. Sci. U.S.A. 1997, 94:2438.
38. Hamilton B.A., Smith D.J., Mueller K.L., Kerrebrock A.W., Bronson R.T., van Berkel V., Daly M.J., Kruglyak L., Reeve M.P., Nemhauser J.L., Hawkins T.L., Rubin E.M., Lander E.S. Neuron 1997, 18:711.
39. Ren Y., Wang J., Xia J., Jiang C., Zhao K., Li R., Xu N., Xu Y., Liu S. J. Proteome Res. 2007, 6:2812.
40. Martinez C., Juarranz Y., Abad C., Arranz A., Miguel B.G., Rosignoli F., Leceta J., Gomariz R.P. J. Leukoc. Biol. 2005, 77:729.