-
1
-
-
0035782925
-
Review: protein secondary structure prediction continues to rise
-
Rost B. Review: protein secondary structure prediction continues to rise. J Struct Bio 2001; 134: 204-218.
-
(2001)
J Struct Bio
, vol.134
, pp. 204-218
-
-
Rost, B.1
-
2
-
-
70350507112
-
Secbase: database module to retrieve secondary structure elements with ligand binding motifs
-
Koch O, Cole J, Block P, Klebe G. Secbase: database module to retrieve secondary structure elements with ligand binding motifs. J Chem Inf Model 2009; 49: 2388-2402.
-
(2009)
J Chem Inf Model
, vol.49
, pp. 2388-2402
-
-
Koch, O.1
Cole, J.2
Block, P.3
Klebe, G.4
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The Protein Data Bank. Nucleic Acids Res 2000; 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
4
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983; 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
5
-
-
0029619259
-
Knowledge-based protein secondary structure assignment
-
Frishman D, Argos P. Knowledge-based protein secondary structure assignment. Proteins 1995; 23: 566-579.
-
(1995)
Proteins
, vol.23
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
6
-
-
59449097827
-
Turns revisited: a uniform and comprehensive classification of normal, open, and reverse turn families minimizing unassigned random chain portions
-
Koch O, Klebe G. Turns revisited: a uniform and comprehensive classification of normal, open, and reverse turn families minimizing unassigned random chain portions. Proteins 2009; 74: 353-367.
-
(2009)
Proteins
, vol.74
, pp. 353-367
-
-
Koch, O.1
Klebe, G.2
-
7
-
-
0003908973
-
-
Edited by Liébecq C, 2nd ed. Portland Press, London; Available at: Accessed on 7.1.12
-
Biochemical Nomenclature and Related Documents, Edited by Liébecq C, 2nd ed. Portland Press, London; 1992. pp 73-81. Available at: Accessed on 7.1.12
-
(1992)
Biochemical Nomenclature and Related Documents
, pp. 73-81
-
-
-
8
-
-
0017701604
-
Automatic identification of secondary structure in globular proteins
-
Levitt M, Greer J. Automatic identification of secondary structure in globular proteins. J Mol Biol 1977; 114: 181-293.
-
(1977)
J Mol Biol
, vol.114
, pp. 181-293
-
-
Levitt, M.1
Greer, J.2
-
9
-
-
0033405203
-
The physical basis of secondary structure in globular proteins
-
Srinivasan R, Rose GD. The physical basis of secondary structure in globular proteins. Proc Natl Acad Sci 1999; 96: 14258-14263.
-
(1999)
Proc Natl Acad Sci
, vol.96
, pp. 14258-14263
-
-
Srinivasan, R.1
Rose, G.D.2
-
10
-
-
0030039296
-
PROMOTIF-a program to identify and analyze structural motifs in proteins
-
Hutchinson EG, Thornton JM. PROMOTIF-a program to identify and analyze structural motifs in proteins. Protein Sci 1996; 5: 212-220.
-
(1996)
Protein Sci
, vol.5
, pp. 212-220
-
-
Hutchinson, E.G.1
Thornton, J.M.2
-
11
-
-
0037436339
-
Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions
-
Hendlich M, Bergner A, Günther J, Klebe G. Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions. J Mol Biol 2003; 326: 607-620.
-
(2003)
J Mol Biol
, vol.326
, pp. 607-620
-
-
Hendlich, M.1
Bergner, A.2
Günther, J.3
Klebe, G.4
-
12
-
-
84860222872
-
-
Secbase: A novel tool to correlate secondary structure elements with ligand binding. Ph.D. Thesis, 2008, Philipps-Universität Marburg, Marburg, Institute for Pharmaceutical Chemistry. Available at: Accessed on 7.1.12
-
Koch O. Secbase: A novel tool to correlate secondary structure elements with ligand binding. Ph.D. Thesis, 2008, Philipps-Universität Marburg, Marburg, Institute for Pharmaceutical Chemistry. Available at: Accessed on 7.1.12
-
-
-
Koch, O.1
-
13
-
-
59449110365
-
Prediction of turn types in protein structure by machine-learning classifiers
-
Meissner M, Koch O, Klebe G, Schneider G. Prediction of turn types in protein structure by machine-learning classifiers. Proteins 2009; 74: 344-352.
-
(2009)
Proteins
, vol.74
, pp. 344-352
-
-
Meissner, M.1
Koch, O.2
Klebe, G.3
Schneider, G.4
-
14
-
-
24944572401
-
Maps for the visualization of high-dimensional data spaces
-
In: Kyushu, Japan.
-
Ultsch A. Maps for the visualization of high-dimensional data spaces. In: Proceedings workshop on self-organizing Maps (WSOM 2003). Kyushu, Japan; 2003. pp. 225-230.
-
(2003)
Proceedings workshop on self-organizing Maps (WSOM 2003)
, pp. 225-230
-
-
Ultsch, A.1
-
15
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm U, Sander C. Enlarged representative set of protein structures. Protein. Sci. 1994; 3: 522-524.
-
(1994)
Protein. Sci.
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
17
-
-
0025690309
-
Situations of gamma-turns in proteins. Their relation to alpha-helices, beta-sheets and ligand binding-sites
-
Millner-White EJ. Situations of gamma-turns in proteins. Their relation to alpha-helices, beta-sheets and ligand binding-sites. J Mol Biol 1990; 216: 386-397.
-
(1990)
J Mol Biol
, vol.216
, pp. 386-397
-
-
Millner-White, E.J.1
-
18
-
-
0015967881
-
Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins
-
Chou PY, Fasman GD. Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins. Biochemistry 1974; 13: 211-222.
-
(1974)
Biochemistry
, vol.13
, pp. 211-222
-
-
Chou, P.Y.1
Fasman, G.D.2
-
19
-
-
0029020484
-
N- and C-capping preferences for all 20 amino acids in alpha-helical peptides
-
Doig AJ, Baldwin RL. N- and C-capping preferences for all 20 amino acids in alpha-helical peptides. Protein Sci 1995; 4: 1325-1336.
-
(1995)
Protein Sci
, vol.4
, pp. 1325-1336
-
-
Doig, A.J.1
Baldwin, R.L.2
-
20
-
-
33746267369
-
α-Helix stabilisation by alanine relative to glycine: roles of polar and apolar solvent exposures and of backbone entropy
-
López-Llano J, Campos LA, Sancho J. α-Helix stabilisation by alanine relative to glycine: roles of polar and apolar solvent exposures and of backbone entropy. Proteins 2006; 64: 769-778.
-
(2006)
Proteins
, vol.64
, pp. 769-778
-
-
López-Llano, J.1
Campos, L.A.2
Sancho, J.3
-
21
-
-
0001428018
-
The alpha-L conformation at the ends of helices
-
In: Jaenicke R, editor. New York: Elsevier/North-Holland.
-
Schellman C. The alpha-L conformation at the ends of helices. In: Jaenicke R, editor. Protein folding. New York: Elsevier/North-Holland; 1980: 53-61.
-
(1980)
Protein folding
, pp. 53-61
-
-
Schellman, C.1
|