메뉴 건너뛰기




Volumn 121, Issue 4, 2011, Pages 529-543

Genome-wide comparison of paired fresh frozen and formalin-fixed paraffin-embedded gliomas by custom BAC and oligonucleotide array comparative genomic hybridization: Facilitating analysis of archival gliomas

Author keywords

Array CGH; BAC aCGH; Glioma

Indexed keywords

CYCLIN DEPENDENT KINASE 4; CYCLIN DEPENDENT KINASE INHIBITOR 2A; CYCLIN DEPENDENT KINASE INHIBITOR 2B; DNA; EPIDERMAL GROWTH FACTOR RECEPTOR; FIBROBLAST GROWTH FACTOR RECEPTOR 4; FORMALDEHYDE; PARAFFIN; PHOSPHATIDYLINOSITOL 3 KINASE; PROTEIN MDM2; TRANSCRIPTION FACTOR GLI1;

EID: 79954583891     PISSN: 00016322     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00401-010-0773-z     Document Type: Article
Times cited : (11)

References (44)
  • 2
    • 70849122697 scopus 로고    scopus 로고
    • Glioblastoma subclasses can be defined by activity among signal transduction pathways and associated genomic alterations
    • 19915670 10.1371/journal.pone.0007752
    • C Brennan H Momota D Hambardzumyan T Ozawa A Tandon A Pedraza E Holland 2009 Glioblastoma subclasses can be defined by activity among signal transduction pathways and associated genomic alterations PLoS One 4 e7752 19915670 10.1371/journal.pone.0007752
    • (2009) PLoS One , vol.4 , pp. 7752
    • Brennan, C.1    Momota, H.2    Hambardzumyan, D.3    Ozawa, T.4    Tandon, A.5    Pedraza, A.6    Holland, E.7
  • 4
    • 36549088506 scopus 로고    scopus 로고
    • Detection of DNA copy-number alterations in complex genomes using array comparative genomic hybridization
    • 17984516 10.1007/978-1-59745-303-5-5 1:CAS:528:DC%2BD2sXhtVSrurzM
    • WW Cai 2007 Detection of DNA copy-number alterations in complex genomes using array comparative genomic hybridization Methods Mol Biol 381 105 119 17984516 10.1007/978-1-59745-303-5-5 1:CAS:528:DC%2BD2sXhtVSrurzM
    • (2007) Methods Mol Biol , vol.381 , pp. 105-119
    • Cai, W.W.1
  • 10
    • 33747622065 scopus 로고    scopus 로고
    • Application of array CGH on archival formalin-fixed paraffin-embedded tissues including small numbers of microdissected cells
    • DOI 10.1038/labinvest.3700441, PII 3700441
    • NA Johnson RA Hamoudi K Ichimura L Liu DM Pearson VP Collins MQ Du 2006 Application of array CGH on archival formalin-fixed paraffin-embedded tissues including small numbers of microdissected cells Lab Invest 86 968 978 16751780 10.1038/labinvest.3700441 1:CAS:528:DC%2BD28Xotl2qu78%3D (Pubitemid 44268171)
    • (2006) Laboratory Investigation , vol.86 , Issue.9 , pp. 968-978
    • Johnson, N.A.1    Hamoudi, R.A.2    Ichimura, K.3    Liu, L.4    Pearson, D.M.5    Collins, V.P.6    Du, M.-Q.7
  • 12
    • 9744246805 scopus 로고    scopus 로고
    • Chromosomal imbalances detected by array comparative genomic hybridization in human oligodendrogliomas and mixed oligoastrocytomas
    • DOI 10.1002/gcc.20108
    • G Kitange A Misra M Law S Passe TM Kollmeyer M Maurer K Ballman BG Feuerstein RB Jenkins 2005 Chromosomal imbalances detected by array comparative genomic hybridization in human oligodendrogliomas and mixed oligoastrocytomas Genes Chromosom Cancer 42 68 77 15472895 10.1002/gcc.20108 1:CAS:528: DC%2BD2cXhtFGmsrfK (Pubitemid 39582821)
    • (2005) Genes Chromosomes and Cancer , vol.42 , Issue.1 , pp. 68-77
    • Kitange, G.1    Misra, A.2    Law, M.3    Passe, S.4    Kollmeyer, T.M.5    Maurer, M.6    Ballman, K.7    Feuerstein, B.G.8    Jenkins, R.B.9
  • 14
    • 0028799791 scopus 로고
    • Shared allelic losses on chromosomes 1p and 19q suggest a common origin of oligodendroglioma and oligoastrocytoma
    • 7815084 10.1097/00005072-199501000-00011 1:STN:280:DyaK2M7hsVKitQ%3D%3D
    • JA Kraus J Koopmann P Kaskel D Maintz S Brandner J Schramm DN Louis OD Wiestler A von Deimling 1995 Shared allelic losses on chromosomes 1p and 19q suggest a common origin of oligodendroglioma and oligoastrocytoma J Neuropathol Exp Neurol 54 91 95 7815084 10.1097/00005072-199501000-00011 1:STN:280:DyaK2M7hsVKitQ%3D%3D
    • (1995) J Neuropathol Exp Neurol , vol.54 , pp. 91-95
    • Kraus, J.A.1    Koopmann, J.2    Kaskel, P.3    Maintz, D.4    Brandner, S.5    Schramm, J.6    Louis, D.N.7    Wiestler, O.D.8    Von Deimling, A.9
  • 15
    • 20444365505 scopus 로고    scopus 로고
    • Molecular cytogenetic analysis of chromosomes 1 and 19 in glioma cell lines
    • DOI 10.1016/j.cancergencyto.2004.11.012, PII S0165460804005837
    • ME Law KL Templeton G Kitange J Smith A Misra BG Feuerstein RB Jenkins 2005 Molecular cytogenetic analysis of chromosomes 1 and 19 in glioma cell lines Cancer Genet Cytogenet 160 1 14 15949564 10.1016/j.cancergencyto.2004.11.012 1:CAS:528:DC%2BD2MXltFaqs7w%3D (Pubitemid 40798130)
    • (2005) Cancer Genetics and Cytogenetics , vol.160 , Issue.1 , pp. 1-14
    • Law, M.E.1    Templeton, K.L.2    Kitange, G.3    Smith, J.4    Misra, A.5    Feuerstein, B.G.6    Jenkins, R.B.7
  • 18
    • 68949213291 scopus 로고    scopus 로고
    • Application of array-based whole genome scanning technologies as a cytogenetic tool in haematological malignancies
    • 19563474 10.1111/j.1365-2141.2009.07757.x 1:CAS:528:DC%2BD1MXhtFeqtLjM
    • JP Maciejewski RV Tiu C O'Keefe 2009 Application of array-based whole genome scanning technologies as a cytogenetic tool in haematological malignancies Br J Haematol 146 479 488 19563474 10.1111/j.1365-2141.2009.07757.x 1:CAS:528:DC%2BD1MXhtFeqtLjM
    • (2009) Br J Haematol , vol.146 , pp. 479-488
    • MacIejewski, J.P.1    Tiu, R.V.2    O'Keefe, C.3
  • 20
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • 10.1038/nature07385 1:CAS:528:DC%2BD1cXht1yju77J
    • R McLendon A Friedman D Bigner EG Van Meir DJ Brat GM Mastrogianakis JJ Olson 2008 Comprehensive genomic characterization defines human glioblastoma genes and core pathways Nature 455 1061 1068 10.1038/nature07385 1:CAS:528:DC%2BD1cXht1yju77J
    • (2008) Nature , vol.455 , pp. 1061-1068
    • McLendon, R.1    Friedman, A.2    Bigner, D.3    Van Meir, E.G.4    Brat, D.J.5    Mastrogianakis, G.M.6    Olson, J.J.7
  • 21
    • 5044224775 scopus 로고    scopus 로고
    • DNA-microarray analysis of brain cancer: Molecular classification for therapy
    • DOI 10.1038/nrn1518
    • PS Mischel TF Cloughesy SF Nelson 2004 DNA-microarray analysis of brain cancer: molecular classification for therapy Nat Rev Neurosci 5 782 792 15378038 10.1038/nrn1518 1:CAS:528:DC%2BD2cXns1KiurY%3D (Pubitemid 39336215)
    • (2004) Nature Reviews Neuroscience , vol.5 , Issue.10 , pp. 782-792
    • Mischel, P.S.1    Cloughesy, T.F.2    Nelson, S.F.3
  • 22
    • 0642306004 scopus 로고    scopus 로고
    • Molecular analysis of glioblastoma: Pathway profiling and its implications for patient therapy
    • 12878856 1:CAS:528:DC%2BD3sXosFCgsL4%3D
    • PS Mischel SF Nelson TF Cloughesy 2003 Molecular analysis of glioblastoma: pathway profiling and its implications for patient therapy Cancer Biol Ther 2 242 247 12878856 1:CAS:528:DC%2BD3sXosFCgsL4%3D
    • (2003) Cancer Biol Ther , vol.2 , pp. 242-247
    • Mischel, P.S.1    Nelson, S.F.2    Cloughesy, T.F.3
  • 23
    • 17144376016 scopus 로고    scopus 로고
    • Array comparative genomic hybridization identifies genetic subgroups in grade 4 human astrocytoma
    • DOI 10.1158/1078-0432.CCR-04-0708
    • A Misra M Pellarin J Nigro I Smirnov D Moore KR Lamborn D Pinkel DG Albertson BG Feuerstein 2005 Array comparative genomic hybridization identifies genetic subgroups in grade 4 human astrocytoma Clin Cancer Res 11 2907 2918 15837741 10.1158/1078-0432.CCR-04-0708 1:CAS:528:DC%2BD2MXjtlejt7w%3D (Pubitemid 40525192)
    • (2005) Clinical Cancer Research , vol.11 , Issue.8 , pp. 2907-2918
    • Misra, A.1    Pellarin, M.2    Nigro, J.3    Smirnov, I.4    Moore, D.5    Lamborn, K.R.6    Pinkel, D.7    Albertson, D.G.8    Feuerstein, B.G.9
  • 24
    • 33744529640 scopus 로고    scopus 로고
    • Glioma test array for use with formalin-fixed, paraffin-embedded tissue: Array comparative genomic hybridization correlates with loss of heterozygosity and fluorescence in situ hybridization
    • DOI 10.2353/jmoldx.2006.050109
    • G Mohapatra RA Betensky ER Miller B Carey LD Gaumont DA Engler DN Louis 2006 Glioma test array for use with formalin-fixed, paraffin-embedded tissue: array comparative genomic hybridization correlates with loss of heterozygosity and fluorescence in situ hybridization J Mol Diagn 8 268 276 16645215 10.2353/jmoldx.2006.050109 1:CAS:528:DC%2BD28XltlKlsLw%3D (Pubitemid 43811252)
    • (2006) Journal of Molecular Diagnostics , vol.8 , Issue.2 , pp. 268-276
    • Mohapatra, G.1    Betensky, R.A.2    Miller, E.R.3    Carey, B.4    Gaumont, L.D.5    Engler, D.A.6    Louis, D.N.7
  • 25
    • 0029010921 scopus 로고
    • Detection of multiple gains and losses of genetic material in ten glioma cell lines by comparative genomic hybridization
    • 7542911 10.1002/gcc.2870130203 1:CAS:528:DyaK2MXms1Sms74%3D
    • G Mohapatra DH Kim BG Feuerstein 1995 Detection of multiple gains and losses of genetic material in ten glioma cell lines by comparative genomic hybridization Genes Chromosom Cancer 13 86 93 7542911 10.1002/gcc.2870130203 1:CAS:528:DyaK2MXms1Sms74%3D
    • (1995) Genes Chromosom Cancer , vol.13 , pp. 86-93
    • Mohapatra, G.1    Kim, D.H.2    Feuerstein, B.G.3
  • 26
    • 0030690049 scopus 로고    scopus 로고
    • Analyses of brain tumor cell lines confirm a simple model of relationships among fluorescence in situ hybridization, DNA index, and comparative genomic hybridization
    • DOI 10.1002/(SICI)1098-2264(199712)20:4<311::AID-GCC1>3.0.CO;2-4
    • G Mohapatra DH Moore DH Kim L Grewal WC Hyun FM Waldman D Pinkel BG Feuerstein 1997 Analyses of brain tumor cell lines confirm a simple model of relationships among fluorescence in situ hybridization, DNA index, and comparative genomic hybridization Genes Chromosom Cancer 20 311 319 9408746 10.1002/(SICI)1098-2264(199712)20:4<311::AID-GCC1>3.0.CO;2-4 1:CAS:528:DyaK2sXotVCht70%3D (Pubitemid 27520079)
    • (1997) Genes Chromosomes and Cancer , vol.20 , Issue.4 , pp. 311-319
    • Mohapatra, G.1    Moore, D.H.2    Kim, D.H.3    Grewal, L.4    Hyun, W.C.5    Waldman, F.M.6    Pinkel, D.7    Feuerstein, B.G.8
  • 28
    • 20144389740 scopus 로고    scopus 로고
    • Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma
    • DOI 10.1158/0008-5472.CAN-04-2921
    • JM Nigro A Misra L Zhang I Smirnov H Colman C Griffin N Ozburn M Chen E Pan D Koul WK Yung BG Feuerstein KD Aldape 2005 Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma Cancer Res 65 1678 1686 15753362 10.1158/0008-5472.CAN-04-2921 1:CAS:528:DC%2BD2MXitVOjs7c%3D (Pubitemid 40478592)
    • (2005) Cancer Research , vol.65 , Issue.5 , pp. 1678-1686
    • Nigro, J.M.1    Misra, A.2    Zhang, L.3    Smirnov, I.4    Colman, H.5    Griffin, C.6    Ozburn, N.7    Chen, M.8    Pan, E.9    Koul, D.10    Yung, W.K.A.11    Feuerstein, B.G.12    Aldape, K.D.13
  • 30
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • DOI 10.1093/biostatistics/kxh008
    • AB Olshen ES Venkatraman R Lucito M Wigler 2004 Circular binary segmentation for the analysis of array-based DNA copy number data Biostatistics 5 557 572 15475419 10.1093/biostatistics/kxh008 (Pubitemid 41180205)
    • (2004) Biostatistics , vol.5 , Issue.4 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 31
    • 33847751110 scopus 로고    scopus 로고
    • High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays
    • DOI 10.1101/gr.5686107
    • J Oosting EH Lips R van Eijk PH Eilers K Szuhai C Wijmenga H Morreau T van Wezel 2007 High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays Genome Res 17 368 376 17267813 10.1101/gr.5686107 1:CAS:528:DC%2BD2sXis12hsr4%3D (Pubitemid 46376746)
    • (2007) Genome Research , vol.17 , Issue.3 , pp. 368-376
    • Oosting, J.1    Lips, E.H.2    Van Eijk, R.3    Eilers, P.H.C.4    Szuhai, K.5    Wijmenga, C.6    Morreau, H.7    Van Wezel, T.8
  • 33
    • 34548732563 scopus 로고    scopus 로고
    • High resolution oligonucleotide CGH using DNA from archived prostate tissue
    • DOI 10.1002/pros.20632
    • PL Paris S Sridharan A Scheffer A Tsalenko L Bruhn C Collins 2007 High resolution oligonucleotide CGH using DNA from archived prostate tissue Prostate 67 1447 1455 17654530 10.1002/pros.20632 1:CAS:528:DC%2BD2sXhtFantbjK (Pubitemid 47435791)
    • (2007) Prostate , vol.67 , Issue.13 , pp. 1447-1455
    • Paris, P.L.1    Sridharan, S.2    Scheffer, A.3    Tsalenko, A.4    Bruhn, L.5    Collins, C.6
  • 35
    • 25844449738 scopus 로고    scopus 로고
    • Comparative genomic hybridization
    • DOI 10.1146/annurev.genom.6.080604.162140
    • D Pinkel DG Albertson 2005 Comparative genomic hybridization Annu Rev Genomics Hum Genet 6 331 354 16124865 10.1146/annurev.genom.6.080604.162140 1:CAS:528:DC%2BD2MXhtFWisrvP (Pubitemid 41397087)
    • (2005) Annual Review of Genomics and Human Genetics , vol.6 , pp. 331-354
    • Pinkel, D.1    Albertson, D.G.2
  • 43
    • 32644441984 scopus 로고    scopus 로고
    • BAC to the future! Or oligonucleotides: A perspective for micro array comparative genomic hybridization (array CGH)
    • DOI 10.1093/nar/gkj456
    • B Ylstra P van den Ijssel B Carvalho RH Brakenhoff GA Meijer 2006 BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH) Nucleic Acids Res 34 445 450 16439806 10.1093/nar/gkj456 1:CAS:528:DC%2BD28XhtlOnurg%3D (Pubitemid 43240234)
    • (2006) Nucleic Acids Research , vol.34 , Issue.2 , pp. 445-450
    • Ylstra, B.1    Van Den Ijssel, P.2    Carvalho, B.3    Brakenhoff, R.H.4    Meijer, G.A.5
  • 44
    • 33751527925 scopus 로고    scopus 로고
    • Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome
    • DOI 10.1159/000095916
    • J Zhang L Feuk GE Duggan R Khaja SW Scherer 2006 Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome Cytogenet Genome Res 115 205 214 17124402 10.1159/000095916 1:CAS:528:DC%2BD28Xht1erur3I (Pubitemid 44832022)
    • (2006) Cytogenetic and Genome Research , vol.115 , Issue.3-4 , pp. 205-214
    • Zhang, J.1    Feuk, L.2    Duggan, G.E.3    Khaja, R.4    Scherer, S.W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.