Leucobacter exalbidus sp. nov., an actinobacterium isolated from a mixed culture from compost

Journal of General and Applied Microbiology

Volumn 57, Issue 1, 2011, Pages 27-33

  Ue, Harumi ^a  

^a KYOWA HAKKO KOGYO CO LTD   (Japan)

Author keywords

Leucobacter; Leucobacter exalbidus sp. nov.; New species

Indexed keywords

2,4 DIAMINOBUTYRIC ACID; 4 AMINOBUTYRIC ACID; CARDIOLIPIN; FATTY ACID; GENOMIC DNA; MENAQUINONE; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL CELL WALL; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; COMPOST; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; LEUCOBACTER EXALBIDUS; MIXED CELL CULTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYSICAL CHEMISTRY; RNA SEQUENCE; SEPARATION TECHNIQUE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; TAXONOMIC IDENTIFICATION;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE SEQUENCE; DNA, BACTERIAL; DNA, RIBOSOMAL; LIPIDS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

LEUCOBACTER; POSIBACTERIA;

EID: 79954469208     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.57.27     Document Type: Article

References (27)

1. Behrendt, U., Ulrich, A., and Schmann, P. (2008) Leucobacter tardus sp. isolated from the phyllosphere of Solanum tuberosum L. Int. J. Syst. Evol. Microbiol., 58, 2574-2578.
2. Brosius, J., Palmer, M. L., Kennedy, P. J., and Noller, H. F. (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA, 75, 4801-4805.
3. Collins, M. D., Pirouz, T., Goodfellow, M., and Minnikin, D. E. (1977) Distributions of menaquinones in actinomycetes and corynebacteria. J. Gen. Microbiol., 100, 221-230.
4. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229.
5. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
6. Fitch, W. M. (1971) Toward defining the course of evolution: Minimum change for a specific tree topology. Syst. Zool., 20, 406-416.
7. Halpern, M., Shaked, T., Pukall, R., and Schumann, P. (2009) Leucobacter chironomi sp. nov., a chromate-resistant bacterium isolated from a chironomid egg mass. Int. J. Syst. Bacteriol., 59, 665-670.
8. Harper, J. J. and Davis, G. H. G. (1979) Two-dimensional thinlayer chromatography for amino acid analysis of bacterial cell walls. Int. J. Syst. Bacteriol., 29, 56-58.
9. Kimura, M. (1983) The Neutral Theory of Molecular Evolution, Cambridge University Press, Cambridge.
10. Lin, Y.-C., Uemori, K., de Briel, D. A., Arunpairojana, V., and Yokota, A. (2004) Zimmermannella helvola gen. nov., sp. nov., Zimmermannella alba sp. nov., Zimmermannella bifida sp. nov., Zimmermannella faecalis sp. nov. and Leucobacter albus sp. nov., novel members of the family Microbacteriaceae. Int. J. Syst. Evol. Microbiol., 54, 1669-1676.
11. Martin, E., Lodders, N., Jäckel, U., Schumann, S., and Kämpfer, P. (2010) Leucobacter aerolatus sp. nov., from the air of a duck barn. Int. J. Syst. Evol. Microbiol., 60, 2838-2842.
12. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A., and Parlett, J. H.(1984) An integrated procedure for the extraction of bacterial isoprenoid quinines and polar lipids. J. Microbiol. Methods, 2, 233-241.
13. Morais, P. V., Francisco, R., Branco, R., Chung, A. P., and da Costa, M. S. (2004) Leucobacter chromiireducens sp. nov., and Leucobacter aridicollis sp. nov., two new species isolated from a chromium contaminated environment. Syst. Appl. Microbiol., 27, 646-652.
14. Morais, P. V., Paulo, C., Francisco, R., Branco, R., Chung, A. P., and da Costa, M. S. (2006) Leucobacter luti sp. nov., and Leucobacter alluvii sp. nov., two new species of the genus Leucobacter isolated under chromium stress. Syst. Appl. Microbiol., 29, 414-421.
15. Muir, R. E. and Tan, M.-W. (2007) Leucobacter chromiireducens subsp. solipictus subsp. nov., a pigmented bacterium isolated from the nematode Caenorhabditis elegans, and emended description of L. chromiireducens. Int. J. Syst. Evol. Microbiol., 57, 2770-2776.
16. Ogiso, H., Suzuki, T., and Taguchi, R. (2008) Development of a reverse-phase liquid chromatography electrospray ionization mass spectrometry method for lipidomics, improving detection of phosphatidic acid and phosphatidylserine. Anal. Biochem., 375, 124-131.
17. Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
18. Schleifer, K. H. and Kandler, O. (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol. Rev., 36, 407-477.
19. Soga, T. and Heiger, D. N. (2000) Amino acid analysis by capillary electroporesis electrospray ionization mass spectrum etry. Anal. Chem., 72, 1236-1241.
20. Somvanshi, V. S., Lang, E., Schumann, P., Pukall, R., Kroppenstedt, R. M., Ganguly, S., and Stackebrandt, E. (2007) Leucobacter iarius sp. nov., in the family Microbacteriaceae. Int. J. Syst. Evol. Microbiol., 57, 682-686.
21. Suzuki, M., Nakagawa, Y., Harayama, S., and Yamamoto, S. (1999) Phylogenetic analysis of genus Marinilabilia and related bacteria based on the amino acid sequences of GyrB and emended description of Marinilabilia salmonicolor with Marinilabilia agarovorans as its subjective synonym. Int. J. Syst. Bacteriol., 49, 1551-1557.
22. Takeuchi, M., Weiss, N., Schumann, P., and Yokota, A. (1996) Leucobacter komagatae gen. nov., sp. nov., a new aerobic Gram-positive, nonsporulating rod with 2,4-diaminobutyric acid in the cell wall. Int. J. Syst. Bacteriol., 46, 967-971.
23. Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24, 1596-1599.
24. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
25. Trenser, H. D. and Danga, F. (1958) Hydrogen sulfide production by Streptomyces as a criterion for species differentiation. J. Bacteriol., 6, 239-244.
26. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E., Stackebrandt, E., Starr, M. P., and Trüper, H. G. (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol., 37, 463-464.
27. Yokota, A., Tamura, T., Nishii, T., and Hasegawa, T. (1993) Kineococcus aurantiacus gen. nov., sp. nov., a new aerobic, gram-positive, motile coccus with diaminopimelic acid and arabinogalactan in the cell wall. Int. J. Syst. Bacteriol., 43, 52-57.