Predicting habitat to optimize sampling of Pacific sardine (Sardinops sagax)

ICES Journal of Marine Science

Volumn 68, Issue 5, 2011, Pages 867-879

  Zwolinski, Juan P ^a   Emmett, Robert L ^b   Demer, David A ^a  

^a NOAA EARTH SYSTEM RESEARCH LABORATORY   (United States)

^b NORTHWEST FISHERIES SCIENCE CENTER   (United States)

Author keywords

generalized additive model; habitat; optimal sampling; Pacific sardine; remote sensing

Indexed keywords

AERIAL SURVEY; CHLOROPHYLL A; CLUPEOID; COASTAL ZONE; EGG PRODUCTION; FISHERY SURVEY; OPTIMIZATION; PHOTIC ZONE; POPULATION MIGRATION; REMOTE SENSING; SAMPLING; SEA SURFACE TEMPERATURE; SPAWNING; TRAWLING; UPWELLING;

CALIFORNIA CURRENT; CANADA; PACIFIC OCEAN; PACIFIC OCEAN (NORTHEAST); PACIFIC OCEAN (SOUTHEAST); UNITED STATES;

SARDINOPS SAGAX;

EID: 79954452184     PISSN: 10543139     EISSN: 10959289     Source Type: Journal    
DOI: 10.1093/icesjms/fsr038     Document Type: Article

References (53)

1. Aglen, A. 1983. Random errors of acoustic fish abundance estimates in relation to the survey grid density applied. FAO Fisheries Report, 300: 293-298.
2. Bakun, A., and Parrish, R. H. 1982. Turbulence, transport, and pelagic fish in the California and Peru Current systems. CalCOFI Reports, 23: 99-112.
3. Barange, M., Coetzee, J., Takasuka, A., Hill, K., Gutierrez, M., Oozeki, Y., van der Lingen, C., et al. 2009. Habitat expansion and contraction in anchovy and sardine populations. Progress in Oceanography, 83: 251-260.
4. Barange, M., Coetzee, J., and Twatwa, N. 2005. Strategies of space occupation in anchovy and sardine in the southern Benguela: the role of stock size and intra-specific competition. ICES Journal of Marine Science, 62: 645-654. (Pubitemid 40743028)
5. Barry, S., and Elith, J. 2006. Error and uncertainty in habitat models. Journal of Applied Ecology, 43: 413-423. (Pubitemid 43725546)
6. Baumgartner, T., Durazo, R., Lavaniegos, B., Gaxiola, G., Gó mez, J., and García, J. 2008. Ten years of change from IMECOCAL observations in the southern region of the California Current ecosystem. GLOBEC International Newsletter, 14: 43-54.
7. Bograd, S. J., Foley, D. G., Schwing, F. B., Wilson, C., Laurs, R. M., Polovina, J. J., Howell, E. A., et al. 2004. On the seasonal and interannual migrations of the transition zone chlorophyll front. Geophysical Research Letters, 31: L17204.
8. Checkley, D. M., Dotson, R. C., and Griffith, D. A. 2000. Continuous, underway sampling of eggs of Pacific sardine (Sardinops sagax) andnorthern anc ovy (Engraulis mordax) in spring 1996 and 1997 off southern and central California. Deep Sea Research II, 47: 1139-1155. (Pubitemid 30124493)
9. Chilès, J-P., and Delfiner, P. 1999. Geostatistics-Modelling Spatial Uncertainty. Wiley Series in Probability and Statistics. John Wiley, New York. 695 pp.
10. Clark, F. N. 1936. Interseasonal and intraseasonal changes in size of the California sardine (Sardinops caerulea). California Department of Fish and Game Fish Bulletin, 47. 31 pp.
11. Clark, F. N., and Janssen, J. F. 1945. Movements and abundance of the sardine as measured by tag returns. California Department of Fish and Game Fish Bulletin, 61: 7-42.
12. Curtis, K. A. 2004. Fine scale spatial pattern of Pacific sardine (Sardinops sagax) and northern anchovy Engraulis mordax eggs. Fisheries Oceanography, 13: 239-254. (Pubitemid 38889469)
13. Demer, D. A. 2004. An estimate of error for the CCAMLR 2000 survey estimate of krill biomass. Deep Sea Research II, 51: 1237-1251. (Pubitemid 39464727)
14. Diniz-Filho, J. A. F., Bini, M. L., and Hawkins, B. A. 2003. Spatial autocorrelation and red herrings in geographical ecology. Global Ecology and Biogeography, 12: 53-64.
15. Emmett, R. L., Brodeur, R. D., Miller, T. W., Pool, S. S., Bentley, P. J., Krutzikowsky, G. K., and McCrae, J. 2005. Pacific sardine (Sardinops sagax) abundance, distribution and ecological relationships in the Pacific Northwest. CalCOFI Reports, 46: 122-143.
16. Espinoza, P., Bertrand, A., van der Lingen, C. D., Garrido, S., and de Mendiola, B. R. 2009. Diet of sardine (Sardinops sagax) in the northern Humboldt Current system and comparison with the diets of clupeoids in this and other eastern boundary upwelling systems. Progress in Oceanography, 83: 242-250.
17. Fawcett, T. 2006. An introduction to ROC analysis. Pattern Recognition Letters, 27: 861-874.
18. Guisan, A., and Zimmermann, N. E. 2000. Predictive habitat distribution models in ecology. Ecological Modelling, 135: 147-186. (Pubitemid 32102782)
19. Hanley, J. A., and McNeil, B. J. 1982. The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology, 143: 29-36. (Pubitemid 12142173)
20. Higgins, E. 1926. A study of fluctuations in the sardine fishery at San Pedro. California Department of Fish and Game Fish Bulletin, 11: 125-158.
21. Hill, K. T., Lo, N. C. H., Macewicz, B. J., Crone, P. R., and Félix-Uraga, R. 2009. Assessment of the Pacific sardine resource in 2009 for US management in 2010. NOAA Technical Memorandum, NOAA-TM-NMFS-SWFSC-452. 156 pp.
22. Hill, K. T., Lo, N. C. H., Macewicz, B. J., and Félix-Uraga, R. 2006. Assessment of the Pacific sardine (Sardinops sagax caerulea) population for US management in 2007. NOAA Technical Memorandum, NOAA-TM-NMFS-SWFSC-396. 79 pp.
23. Hsieh, C., Glaser, S., Lucas, A. J., and Sugihara, G. 2005. Distinguishing random environmental fluctuations from ecological catastrophes for the North Pacific Ocean. Nature, 435: 336-340. (Pubitemid 40745542)
24. Jacobson, L. D., Bograd, S. J., Parrish, R. H., Mendelssohn, R., and Schwing, F. B. 2005. An ecosystem-based hypothesis for climatic effects on surplus production in California sardine (Sardinops sagax) and environmentally dependent surplus production models. Canadian Journal of Fisheries and Aquatic Sciences, 62: 1782-1796. (Pubitemid 41634955)
25. Lasker, R. 1964. An experimental study of the effect of temperature on incubation time, development and growth of Pacific sardine embryos and larvae. Copeia, 2: 399-406.
26. Lluch-Belda, D., Lluch-Cota, D. B., Hernández-Vázquez, S., Salinas-Zavala, C., and Schwartzlose, R. A. 1991. Sardine and anchovy spawning as related to temperature and upwelling in the California Current system. CalCOFI Reports, 32: 105-111.
27. Lo, N. C. H., Macewicz, B. J., Griffith, D. A., and Charter, R. L. 2007. Spawning biomass of Pacific sardine (Sardinops sagax) off US and Canada in 2006. NOAA Technical Memorandum, NOAA-TM-NMFS-SWFSC-401. 32 pp.
28. Loggerwell, E. A., and Smith, P. E. 2001. Mesoscale eddies and survival of late stage Pacific sardine (Sardinops sagax) larvae. Fisheries Oceanography, 10: 13-25. (Pubitemid 32449284)
29. Lynn, R. J. 2003. Variability in the spawning habitat of Pacific sardine (Sardinops sagax) off southern and central California. Fisheries Oceanography, 12: 541-553. (Pubitemid 37435957)
30. MacCall, A. 2009.Mechanisms of low-frequency fluctuation in sardine and anchovy populations. In Climate Change and Small Pelagic Fish, pp. 285-299. Ed. by D. Checkley, J. Alheit, Y. Oozeki, and C. Roy. Cambridge University Press, Cambridge, UK. 372 pp.
31. Macewicz, B. J., and Abramenkoff, D. N. 1993. Collection of jack mackerel, Trachurus symmetricus, off southern California during 1991 cooperative US-USSR cruise. SWFSC-NMFS Administrative Report, LJ-93-07. 13 pp.
32. Mantyla, A. W., Bograd, S. J., and Venrick, E. L. 2008. Patterns of chlorophyll a and primary productivity cycles in the southern California Bight. Journal of Marine Systems, 73: 48-60.
33. Martínez-Porchas, M., Hernandez-Rodriguez, M., and Buckle-Ramirez, L. F. 2009. Thermal behavior of the Pacific sardine (Sardinops sagax) acclimated to different thermal cycles. Journal of Thermal Biology, 34: 372-376.
34. McClatchie, S. 2009. Report on the NMFS California Current Ecosystem Survey (CCES) (April and July-August 2008). NOAA Technical Memorandum, NOAA-TM-NMFS-SWFSC-438. 98 pp.
35. McCullagh, P., and Nelder, J. A. 1997. Generalized Linear Models, 2nd edn. Chapman and Hall, London. 511 pp.
36. McFarlane, G. A., and Beamish, R. J. 2001. The re-occurrence of sardines off British Columbia characterizes the dynamic nature of regimes. Progress in Oceanography, 49: 151-165. (Pubitemid 32925756)
37. McFarlane, G. A., Schweigert, J., MacDougall, L., and Hrabok, C. 2005. Distribution and biology of Pacific sardine (Sardinops sagax) off British Columbia, Canada. CalCOFI Reports, 46: 144-160.
38. Polovina, J. J., Howell, E., Kobayashi, D. R., and Seki, M. P. 2001. The Transition Chlorophyll Front, a dynamic global feature defining migration and forage habitat for marine resources. Progress in Oceanography, 49: 469-483. (Pubitemid 32925771)
39. R Development Core Team. 2009. R: a Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0
40. Radovich, J. 1982. The collapse of the California sardine fishery: what have we learned. CalCOFI Reports, 23: 56-78.
41. Reiss, C. S., Checkley, D. M., and Bograd, S. J. 2008. Remotely sensed spawning habitat of Pacific sardine (Sardinops sagax) and northern anchovy (Engraulis mordax) within the California Current. Fisheries Oceanography, 17: 126-136. (Pubitemid 351442686)
42. Rykaczewski, R. R., and Checkley, D. M. 2008. Influence of ocean winds on the pelagic ecosystem in upwelling regions. Proceedings of the National Academy of Sciences of the USA, 105: 1965-1970. (Pubitemid 351439448)
43. Schweigert, J., and McFarlane, G. A. 2001. Stock assessment and recommended harvest for Pacific sardine in 2002. Canadian Science Advisory Secretariat Research Document, 2001/126.
44. Smith, P. E. 1978. Precision of sonar mapping for pelagic fish assessment in the California Current. Journal du Conseil International pour l'Exploration de la Mer, 38: 33-40.
45. Smith, P. E. 2005. A history of proposals for subpopulation structure in the Pacific sardine (Sardinops sagax) population off western North America. CalCOFI Report, 46: 75-82.
46. Smith, P. E., and Moser, H. G. 2003. Long-term trends and variability in the larvae of Pacific sardine and associated fish species of the California Current region. Deep Sea Research II, 50: 2519-2536. (Pubitemid 37181381)
47. Solanki, H. U., Prakash, P., Dwivedi, R. M., Nayak, S., Kulkarni, A., and Somvamshi, V. S. 2010. Synergistic application of oceanographic variables from multi-satellite sensors for forecasting potential fishing zones: methodology and validation results. Remote Sensing, 31: 775-789.
48. Ware, D. M. 1999. Life history of Pacific sardine and a suggested framework for determining a BC catch quota. Canadian Stock Assessment Secretariat Research Document, 99/204. 19 pp.
49. Weber, E. D., and McClatchie, S. 2010. Predictive models of northern anchovy Engraulis mordax and Pacific sardine Sardinops sagax spawning habitat in the California Current. Marine Ecology Progress Series, 406: 251-263.
50. Whittaker, R. H., Levin, S. A., and Root, R. B. 1973. Niche, habitat and ecotope. The American Naturalist, 107: 321-338.
51. Wood, S. 2006. Generalized Additive Models: an Introduction with R. Texts in Statistical Sciences. Chapman and Hall/CRC, Boca Raton, FL. 391 pp.
52. Wood, S. N., and Augustin, N. H. 2002. GAMS with integrated model selection using penalized regression splines and applications to environmental modeling. Ecological Modeling, 157: 157-177. (Pubitemid 35255413)
53. Zwolinski, J., Mason, E., Oliveira, P. B., and Stratoudakis, Y. 2006. Fine-scale distribution of sardine (Sardina pilchardus) eggs and adults during a spawning event. Journal of Sea Research, 56: 294-304. (Pubitemid 44647965)