Turing-Child field underlies spatial periodicity in Drosophila and planarians

Progress in Biophysics and Molecular Biology

Volumn 105, Issue 3, 2011, Pages 258-269

  Schiffmann, Yoram ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Drosophila; Phenotypic suppression; Phosphorylation; Planarian regeneration; Post translational modifications; Segmentation; Stripe formation; Turing morphogens; Turing Child field

Indexed keywords

ANIMAL; BIOLOGICAL MODEL; CYTOLOGY; DROSOPHILA MELANOGASTER; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MITOCHONDRION; PERIODICITY; REVIEW; TURBELLARIA;

ANIMALS; DROSOPHILA MELANOGASTER; GENE EXPRESSION REGULATION; MITOCHONDRIA; MODELS, BIOLOGICAL; PERIODICITY; PLANARIANS;

PLANARIA; TURBELLARIA;

EID: 79954415546     PISSN: 00796107     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbiomolbio.2010.12.007     Document Type: Review

References (66)

1. Adell T., Cebria F., Salo E. Gradients in planarian regeneration and homeostasis. Cold Spring Harb. Perspect. Biol. 2010, 2:a000505.
2. Akam M. The molecular basis for metameric pattern in the Drosophila embryo. Development 1987, 101:1-22.
3. Akam M. Making stripes inelegantly. Nature 1989, 341:282-283.
4. Akiyama T., Okada M. Spatial and developmental changes in the respiratory activity of mitochondria in early Drosophila embryos. Development 1992, 115:1175-1182.
5. Alberts B., Johnson A., Lewis J., Raff M., Roberts K., Walter P. The Molecular Biology of the Cell 2002, Garland Publishing, New York. fourth ed.
6. Baker R.E., Schnell S., Maini P.K. Waves and patterning in developmental biology: vertebrate segmentation and feather bud formation as case studies. Int. J. Dev. Biol. 2009, 53:783-794.
7. Bourbon H.-M., Martin-Blanco E., Rosen D., Kornberg T.B. Phosphorylation of the Drosophila engrailed protein at a site outside its homeodomain enhances DNA binding. J. Biol. Chem. 1995, 270:11130-11139.
8. Campos-Ortega J.A., Hartenstein V. The Embryonic Development of Drosophila melanogaster 1985, Springer-Verlag, Berlin.
9. Carroll S.B. Endless Forms Most Beautiful 2007, Phoenix, London.
10. Chandrasekhar S. Stochastic problems in physics and astronomy. Rev. Mod. Phys. 1943, 15:1-89.
11. Child C.M. The physiological gradients. Protoplasma 1928, 5:447-476.
12. Child C.M. Physiological dominance and physiological isolation in development and reconstitution. W. Roux Arch. Entwicklungsmech 1929, 117:21-66.
13. Coffman J.A. Mitochondria and metazoan epigenesis. Sem. Cell Dev. Biol. 2009, 20:321-329.
14. De Robertis E.M. Spemann's organizer and self-regulation in amphibian embryos. Nat. Rev. Mol. Cell Biol. 2006, 7:296-302.
15. DiNardo S., Kuner J.M., Theis J., OFarrell P.H. Development of embryonic pattern in D. melanogaster as revealed by accumulation of the nuclear engrailed protein. Cell 1985, 43:59-69.
16. Ding D., Whittaker K.L., Lipshitz H.D. Mitochondrially encoded 16S large ribosomal RNA is concentrated in the posterior polar plasm of early Drosophila embryos but is not required for pole cell formation. Dev. Biol. 1994, 163:503-515.
17. Dong J., Hung L.-H., Strome R., Krause H.M. A phosphorylation site in the Ftz homeodomain is required for activity. EMBO J. 1998, 17:2308-2318.
18. Eivers E., Fuentealba L.C., Sander V., Clemens J.C., Hartnett L., De Robertis E.M. Mad is rquired for wingless signaling in wing development and segment patterning in Drosophila. Plos One 2009, 4(8):e6543. 10.1371/journal.pone.0006543.
19. Forsthoefel D.J., Newmark P.A. Emerging patterns in planarian regeneration. Curr. Opin. Gen. Dev. 2009, 19:412-420.
20. Gavis E.R., Hogness D.S. Phosphorylation, expression and function of the Ultrabithorax protein family in Drosophila melanogaster. Development 1991, 112:1077-1093.
21. Gehring W.J. Master Control Genes in Development and Evolution 1998, Yale University Press, New Haven.
22. Gerhart J., Kirschner M. Cells, Embryos, and Evolution 1997, Blackwell Science, Oxford.
23. Gilbert S.F. Developmental Biology 2003, Sinauer, Sunderland. seventh ed.
24. Glansdorff P., Prigogine I. Thermodynamic Theory of Structure, Stability and Fluctuations 1971, Wiley, London.
25. Gsponer J., Babu M.M. The rules of disorder or why disorder rules. Prog. Biophys. Mol. Biol. 2009, 99:94-103.
26. Guger K.A., Gumbiner B.M. β-Catenin has Wnt-like activity and mimics the Nieuwkoop signaling center in Xenopus dorsal-ventral patterning. Dev. Biol. 1995, 172:115-125.
27. Inman R.B. Methodology for the study of the effect of drugs on development and DNA replication in Drosophila melanogaster embryonic tissue. Biochim. Biophys. Acta 1984, 783:205-215.
28. Ip Y.T., Park R.E., Kosman D., Bier E., Levine M. The dorsal gradient morphogen regulates stripes of rhomboid expression in the presumptive neuroectoderm of the Drosophila embryo. Genes Dev. 1992, 6:1728-1739.
29. Jaffe L., Ryoo H.-D., Mann R.S. A role for phosphorylation by casein kinase II in modulating Antennapedia activity in Drosophila. Genes Dev. 1997, 11:1327-1340.
30. Jones B., McGinnis W. The regulation of empty spiracles by Abdominal-B mediates an abdominal segment identity function. Genes Dev. 1993, 7:229-240.
31. Kalthoff K. Analysis of Biological Development 1996, McGraw-Hill, New York.
32. Kauffman S.A., Shymko R.M., Trabert K. Control of sequential compartment formation in Drosophila. Science 1978, 199:259-270.
33. Kauffman S.A. The Origins of Order 1993, Oxford University Press, Oxford.
34. Kilchherr F., Baumgartner S., Bopp D., Frei E., Noll M. Isolation of the paired gene of Drosophila and its spatial expression during early embryogenesis. Nature 1986, 321:493-499.
35. Kondo S., Miura T. Reaction-diffusion model as a framework for understanding biological pattern formation. Science 2010, 329:1616-1620.
36. Kosman D., Ip Y.T., Levine M., Arora K. Establishment of the mesoderm-neuroectoderm boundary in the Drosophila embryo. Science 1991, 254:118-122.
37. Larsen C.W., Hirst E., Alexandre C., Vincent J.-P. Segment boundary formation in Drosophila embryos. Development 2003, 130:5625-5635.
38. Lawrence P.A. The Making of a Fly 1992, Blackwell, Oxford.
39. Leptin M. Drosophila. Embyros, Color Atlas of Development 1994, 113-134. Wolfe, London. J. Bard (Ed.).
40. Lopez A.J., Hogness D.S. Immunochemical dissection of the Ultrabithorax homeoprotein family in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 1991, 88:9924-9928.
41. Macdonald P.M., Ingham P., Struhl G. Isolation, structure, and expression of even-skipped: a second pair-rule gene of Drosophila containing a homeo box. Cell 1986, 47:721-734.
42. Martinez Arias A. Development and patterning of the larval epidermis of Drosophila. The Developmentl of Drosophila melanogaster 1993, 517-608. Cold Spring Harbor Laboratory Press, New York. M. Bate, A. Martinez Arias (Eds.).
43. Maynard Smith J., Szathmary E. The Major Transitions in Evolution 1995, W.H. Freeman, Oxford.
44. Maynard Smith J. Shaping Life: Genes, Embryos and Evolution 1998, Weidenfeld & Nicolson, London.
45. Meinhardt H. Models of Biological Pattern Formation 1982, Academic Press, London.
46. Meinhardt H. Models of biological pattern formation: from elementary steps to the organization of embryonic axes. Curr. Top. Dev. Biol. 2008, 81:1-63.
47. Nguyen P.V., Atwood H.L. Altered impulse activity modifies synaptic physiology and mitochondria in crayfish phasic motor neurons. J. Neurophysiol. 1994, 72:2944-2955.
48. Nogi T., Levin M. Characterization of innexin gene expression and functional roles of gap-junctional communication in planarian regeneration. Dev. Biol. 2005, 287:314-335.
49. Papatsenko D. Stripe formation in the early fly embryo: principles, models, and networks. BioEssays 2009, 31:1172-1180.
50. Reif F. Statistical Physics 1965, McGraw-Hill, New York.
51. Schiffmann Y. An hypothesis: phosphorylation fields as the source of positional information and cell differentiation - (cAMP, ATP) as the universal morphogenetic Turing couple. Prog. Biophys. Mol. Biol. 1991, 56:79-105.
52. Schiffmann Y. Instability of the homogeneous state as the source of localization, epigenesis, differentiation, and morphogenesis. Int. Rev. Cytol. 1994, 154:309-375.
53. Schiffmann Y. Self-organization in biology and development. Prog. Biophys. Mol. Biol. 1997, 68:145-205.
54. Schiffmann D.A. Dorsoventral asymmetry in mitochondrial membrane potential in early Drosophila embryo. Biochem. Soc. Trans. 1997, 25:S653.
55. Schiffmann, D.A., September 2000. The Biochemistry of Development: Mitochodrial Membrane Potential in Fruit Fly Embryos. vol. 2000, issue 9, 2000, pp. 34-40. http://www.sciencedirect.com/preprintarchive.
56. Schiffmann Y. Polarity and form regulation in development and reconstitution. Prog. Biophys. Mol. Biol. 2001, 75:19-74.
57. Schiffmann Y. Segmentation and zooid formation in animals with a posterior growing region: the case for metabolic gradients and Turing waves. Prog. Biophys. Mol. Biol. 2004, 84:61-84.
58. Schiffmann Y. Induction and the Turing-Child field in development. Prog. Biophys. Mol. Biol. 2005, 89:36-92.
59. Schiffmann Y. Symmetry breaking and convergent extension in early chordate development. Prog. Biophys. Mol. Biol. 2006, 92:209-231.
60. Schrodinger E. What Is Life? & Mind and Matter 1989, Cambridge University Press, Cambridge.
61. Shaw R.M., Fay A.J., Puthenveedu M.A., von Zastrow M., Jan Y.-N., Jan L.Y. Microtubule plus-end-tracking proteins target gap junctions directly from the cell interior to adherens junctions. Cell 2007, 128:547-560.
62. Strecker T.R., McGhee S., Shih S., Ham D. Permeabilization, staining and culture of living Drosophila embryos. Biotech. Histochem. 1994, 69:25-30.
63. Strier D.E., Dawson S.P. Turing patterns inside cells. PLoS ONE 2007, 2(10):e1053. 10.1371/journal.pone.0001053.
64. Umulis D., O'Connor M.B., Othmer H.G. Robustness of embryonic spatial patterning in Drosophila melanogaster. Curr. Top. Dev. Biol. 2008, 81:65-111.
65. Vachon G., Cohen B., Pfeifle C., McGuffin M.E., Botas J., Cohen S.M. Homeotic genes of the bithorax complex repress limb development in the abdomen of the Drosophila embryo through the target gene Distal-less. Cell 1992, 71:437-450.
66. Weir M.P., Kornberg T. Patterns of engrailed and fushi tarazu transcripts reveal novel intermediate stages in Drosophila segmentation. Nature 1985, 318:433-439.