Molecular phylogeny of the marine sand-dwelling dinoflagellate herdmania litoralis and an emended description of the closely related planktonic genus archaeperidinium jörgensen

European Journal of Phycology

Volumn 46, Issue 2, 2011, Pages 98-112

  Yamaguchi, Aika ^a   Hoppenrath, Mona ^a,b   Pospelova, Vera ^c   Horiguchi, Takeo ^d   Leander, Brian S ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b SENCKENBERG RESEARCH INSTITUTE   (Germany)

^c UNIVERSITY OF VICTORIA   (Canada)

^d HOKKAIDO UNIVERSITY   (Japan)

Author keywords

Archaeperidinium; Herdmania litoralis; Heterotrophic dinoflagellates; Intraspecific variability; LSU rDNA; Protoperidiniaceae; Protoperidinium minutum; Single cell PCR; SSU rDNA; Thecadinium dragescoi

Indexed keywords

CLONE; DINOFLAGELLATE; EVOLUTIONARY BIOLOGY; INTRASPECIFIC VARIATION; PHYLOGENETICS; PHYLOGENY; POLYMERASE CHAIN REACTION;

DINOPHYCEAE; HERDMANIA LITORALIS; PERIDINIUM MINUTUM; PROTOPERIDINIACEAE; PROTOPERIDINIUM; THECADINIUM DRAGESCOI;

EID: 79953836725     PISSN: 09670262     EISSN: 14694433     Source Type: Journal    
DOI: 10.1080/09670262.2011.564517     Document Type: Article

References (43)

1. Abé, T.H. (1936). Report of the biological survey of Mutsu Bay. 29. Notes on the protozoan fauna of Mutsu Bay. II. Genus Peridinium; subgenus Archaeperidinium. Sci. Rep. Tohoku Univ., Ser. 4, Biology, 10: 639-686.
2. Abé, T.H. (1981). Studies on the family Peridinidae. An unfinished monograph of armoured Dinoflagellata. Publ. Seto Mar. Biol. Lab., Special Publ. Ser., 6: 1-413.
3. Balech, E. (1964a). El plancton de Mar del Plata durante el periodo 1961-62 (Buenos Aires, Argentina). Bol. Inst. Biología Marina, Mar del Plata, Argentina, 4: 1-49.
4. Balech, E. (1964b). Tercera contribucion al conocimiento del genero Peridinium. Revista Inst. Nac. Invest. Ci., Hidrobiol., 1: 179-201.
5. Balech, E. (1974). El genero Protoperidinium Bergh, 1881 (Peridinium Ehrenberg, 1831, Partim). Revista Mus. Argent. Ci. Nat., Bernardino Rivadavia Inst. Nac. Invest. Ci. Nat., Hidrobiol., 4: 1-79.
6. Chomérat, N. & Couté, A. (2008). Protoperidinium bolmonense sp. nov. (Peridiniales, Dinophyceae), a small dinoflagellate from a brackish hypereutrophic lagoon (south of France). Phycologia, 47: 392-403.
7. Dodge, J.D. (1981). Three new generic names in the Dinophyceae; Herdmania, Sclerodinium and Triadinium to replace Heteraulacus and Goniodoma. Br. Phycol. J., 16: 273-280.
8. Dodge, J.D. (1982). Marine Dinoflagellates of the British Isles. Her Majesty's Stationery Office, London. 303 pp.
9. Fensome, R.A., Taylor, F.J.R., Norris, G., Sarjeant, W.A.S., Wharton, D.I. & Williams, G.L. (1993). A Classification of Living and Fossil Dinoflagellates. Micropaleontology Special Publication 7. Sheridan Press, Hanover, Pennsylvania.
10. Fukuyo, Y., Kittaka, J. & Hirano, R. (1977). Studies on the cysts of marine dinoflagellates. I. Protoperidinium minutum (Kofoid) Loeblich. Bull. Plankt. Soc. Jap., 24: 11-18.
11. Gribble, K.E. & Anderson, D.M. (2007). High intraindividual, intraspecific, and interspecific variability in large subunit ribosomal DNA in the heterotrophic dinoflagellates Protoperidinium, Diplopsalis, and Preperidinium (Dinophyceae). Phycologia, 46: 315-32.
12. Handy, S.M., Bachvaroff, T.R., Timme, R.E., Coats, D.W., Kim, S. & Delwiche, C.F. (2009). Phylogeny of four dinophysiacean genera (Dinophyceae, Dinophysiales) Based on rDNA sequences from single cells and environmental samples. J. Phycol., 45: 1163-1174.
13. Higgins, D., Thompson, J., Gibson, T., Thompson, J.D., Higgins, D.G. & Gibson, T.J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22: 4673-4680.
14. Hoppenrath, M. (2000a). Morphology and taxonomy of the marine sand-dwelling genus Thecadinium (Dinophyceae), with the description of two new species from the North German Wadden Sea. Phycologia, 39: 96-108.
15. Hoppenrath, M. (2000b). An emended description of Herdmania litoralis Dodge (Dinophyceae) including the plate formula. Nova Hedwigia, 71: 481-489.
16. Hoppenrath, M. (2000c). Morphology and taxonomy of six marine sand-dwelling Amphidiniopsis species (Dinophyceae, Peridiniales), four of them new, from the German Bight, North Sea. Phycologia, 39: 482-497.
17. Hoppenrath, M., Saldarriaga, J.F., Schweikert, M., Elbrächter, M. & Taylor, F.J.R. (2004). Description of Thecadinium mucosum sp. nov. (Dinophyceae), a new sanddwelling marine dinoflagellate, and an emended description of Thecadinium inclinatum Balech. J. Phycol., 40: 946-961.
18. Hoppenrath, M., Elbrächter, M. & Drebes, G. (2009a). Marine Phytoplankton. Selected Microphytoplankton Species from the North Sea around Helgoland and Sylt. Kleine Senckenberg-Reihe 49. 264 pp.
19. Hoppenrath, M., Koeman, R.P.T. & Leander, B.S. (2009b). Morphology and taxonomy of a new marine sand-dwelling Amphidiniopsis species (Dinophyceae, Peridiniales), A. aculeate sp. nov., from Cap Feret, France. Mar. Biodiv., 39: 1-7.
20. Horiguchi, T., Yoshizawa-Ebata, J. & Nakayama, T. (2000). Halostylodinium arenarium, gen. et sp. nov. (Dinophyceae), a coccoid sand-dwelling dinoflagellate from subtropical Japan. J. Phycol., 36: 960-971.
21. Huelsenbeck, J.P. & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17: 754-755.
22. Jörgensen, E. (1912). Berichtüber die von der schwedischen hydrographisch-biologischen Kommission in den schwedischen Gewä ssern in den Jahren 1909-10 eingesammelten Planktonproben. Svenska Hydrograph.-Biol. Komm. Skr., 4: 1-20.
23. Kawami, H., Wezel, R., Koeman, R.P.T. & Matsuoka, K. (2009). Protoperidinium tricingulatum sp. nov. (Dinophyceae), a new motile form of a round, brown, and spiny dinoflagellate cyst. Phycol. Res., 57: 259-267.
24. Kofoid, C.H. (1907). Dinoflagellata of the San Diego Region, III. Descriptions of new species. Contributions from the Laboratory of the Marine Biological Association of the United Kingdom XVII. University of California Publications. Zoology, 3: 299-340.
25. Lebour, M.V. (1925). The Dinoflagellates of the Northern Seas. Marine Biological Association of the United Kingdom, Plymouth. 250 pp.
26. Maddison, D.R. & Maddison, W.P. (2000). MacClade 4: Analysis of Phylogeny and Character Evolution Version 4.0. Sunderland, MA: Sinauer Associates.
27. Meunier, A. (1919). Microplankton de la mer Flamande, Part III. Les Péridiniens. Mém. Mus. R. Hist. Natur. Belgique, 8: 1-116.
28. Okolodkov, Y.B. (2005). Protoperidinium Bergh (Dinoflagellata) in the southeastern Mexican Pacific Ocean: part I. Bot. Mar., 48: 284-296.
29. Paulsen, O. (1907). The Peridiniales of the Danish waters. Medd. Komm. Havundersøg. Kbh., ser. Plankt., 1: 1-26.
30. Posada, D. (2008). jModelTest: phylogenetic model averaging. Mol. Biol. Evol., 25: 1253-1256.
31. Ribeiro, S., Lundholm, N., Amorim, A. & Ellegaard, M. (2010). Protoperidinium minutum (Dinophyceae) from Portugal: cyst-theca relationship and phylogenetic position on the basis of single-cell SSU and LSU rDNA sequencing. Phycologia, 49: 48-63.
32. Ronquist, F. & Huelsenbeck, J.P. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19: 1572-1574.
33. Saldarriaga, J.F., Taylor, F.J.R., Cavalier-Smith, T., MendenDeuer, S. & Keeling, P.J. (2004). Molecular data and the evolutionary history of the dinoflagellates. Eur. J. Protistol., 40: 85-111.
34. Schiller, J. (1937). Dinoflagellatae (Peridineae) in monographischer Behandlung. 2. Teil, Lieferung 4. In Kryptogamen- Flora von Deutschland, Österreich und der Schweiz (Rabenhorst, L., editor). Akademische Verlagsgesellschaft, Leipzig. 589 pp.
35. Siano, R. & Montresor, M. (2005). Morphology, ultrastructure and feeding behaviour of Protoperidinium vorax sp. nov. (Dinophyceae, Peridiniales). Eur. J. Phycol., 40: 221-232.
36. Stamatakis, A. (2006). RAxML-VI-HPC: Maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22: 2688-2690.
37. Stamatakis, A., Hoover, P. & Rougemont, J. (2008). A rapid bootstrap algorithm for the RAxML web-servers. Syst. Biol., 57: 758-771.
38. Takano, Y. & Horiguchi, T. (2004). Surface ultrastructure and molecular phylogenetics of four unarmored heterotrophic dinoflagellates, including the type species of the genus Gyrodinium. Phycol. Res., 52: 107-116.
39. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24: 1596-1599.
40. Taylor, F.J.R. (1976). Dinoflagellates from the International Indian Ocean Expedition: a Report on Material Collected by the R.V. "Anton Bruun" 1963-1964. E. Schweizerbart'sche Verlagsbuchhandlung, Stuttgart. 246 pp.
41. Uhlig, G. (1964). Eine einfach methode zur extraktion der vagilen, mesopsammalen mikrofauna. Helgol. wiss. Meeresunters., 11: 178-185.
42. Yamaguchi, A., Kawamura, H. & Horiguchi, T. (2006). A further phylogenetic study of the heterotrophic dinoflagellate genus Protoperidinium (Dinophyceae) based on small and large subunit ribosomal RNA gene sequences. Phycol. Res., 54: 317-329.
43. Zonneveld, K.A.F. & Dale, B. (1994). The cyst-motile stage relationships of Protoperidinium monospinum (Paulsen) Zonneveld et Dale comb. nov. and Gonyaulax verior (Dinophyta, Dinophyceae) from the Oslo Fjord (Norway). Phycologia, 33: 359-368.