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Volumn 59, Issue 2, 2011, Pages 146-157

Genome-wide gene expression profiling of formalin-fixed paraffin-embedded breast cancer core biopsies using microarrays

Author keywords

Breast cancer; Core needle biopsies; Dna microarray; Formalin fixed paraffin embedded samples; Gene expression

Indexed keywords

EPIDERMAL GROWTH FACTOR RECEPTOR 2; ESTROGEN RECEPTOR; FORMALDEHYDE; PARAFFIN; ESTROGEN RECEPTOR ALPHA; HER2 PROTEIN, HUMAN; RNA;

EID: 79953776636     PISSN: 00221554     EISSN: None     Source Type: Journal    
DOI: 10.1369/jhc.2010.956607     Document Type: Article
Times cited : (27)

References (41)
  • 2
    • 45149107241 scopus 로고    scopus 로고
    • Estrogenand progesterone-receptor status in ECOG 2197: Comparison of immunohistochemistry by local and central laboratories and quantitative reverse transcription polymerase chain reaction by central laboratory
    • Badve SS, Baehner FL, Gray RP, Childs BH, Maddala T, Liu M, Rowley SC, Shak S, Perez EA, Shulman LJ, et al. 2008. Estrogenand progesterone-receptor status in ECOG 2197: comparison of immunohistochemistry by local and central laboratories and quantitative reverse transcription polymerase chain reaction by central laboratory. J Clin Oncol. 26:2473-2481.
    • (2008) J Clin Oncol , vol.26 , pp. 2473-2481
    • Badve, S.S.1    Baehner, F.L.2    Gray, R.P.3    Childs, B.H.4    Maddala, T.5    Liu, M.6    Rowley, S.C.7    Shak, S.8    Perez, E.A.9    Shulman, L.J.10
  • 6
    • 13444282534 scopus 로고    scopus 로고
    • Outcome signature genes in breast cancer: Is there a unique set?
    • Ein-Dor L, Kela I, Getz G, Givol D, Domany E. 2005. Outcome signature genes in breast cancer: is there a unique set? Bioinformatics. 21:171-178.
    • (2005) Bioinformatics , vol.21 , pp. 171-178
    • Ein, D.L.1    Kela, I.2    Getz, G.3    Givol, D.4    Domany, E.5
  • 7
    • 0036432767 scopus 로고    scopus 로고
    • Pathological prognostic factors in breast cancer: I. The value of histological grade in breast cancer: Experience from a large study with long-term follow-up
    • Elston CW, Ellis IO. 2002. Pathological prognostic factors in breast cancer: I. The value of histological grade in breast cancer: experience from a large study with long-term follow-up. Histopathology. 41:154-161.
    • (2002) Histopathology , vol.41 , pp. 154-161
    • Elston, C.W.1    Ellis, I.O.2
  • 8
    • 50249102857 scopus 로고    scopus 로고
    • RNA expression analysis from formalin fixed paraffin embedded tissues
    • Farragher SM, Tanney A, Kennedy RD, Paul Harkin D. 2008. RNA expression analysis from formalin fixed paraffin embedded tissues. Histochem Cell Biol. 130:435-445.
    • (2008) Histochem Cell Biol , vol.130 , pp. 435-445
    • Farragher, S.M.1    Tanney, A.2    Kennedy, R.D.3    Paul, H.D.4
  • 9
    • 67949104963 scopus 로고    scopus 로고
    • Microarray analysis of RNA extracted from formalin-fixed, paraffin-embedded and matched fresh-frozen ovarian adenocarcinomas
    • Fedorowicz G, Guerrero S, Wu TD, Modrusan Z. 2009. Microarray analysis of RNA extracted from formalin-fixed, paraffin-embedded and matched fresh-frozen ovarian adenocarcinomas. BMC Med Genomics. 2:23.
    • (2009) BMC Med Genomics , vol.2 , pp. 23
    • Fedorowicz, G.1    Guerrero, S.2    Wu, T.D.3    Modrusan, Z.4
  • 10
    • 34250855707 scopus 로고    scopus 로고
    • Global gene expression profiling of formalin-fixed paraffin-embedded tumor samples: A comparison to snap-frozen material using oligonucleotide microarrays
    • Frank M, Döring C, Metzler D, Eckerle S, Hansmann M. 2007. Global gene expression profiling of formalin-fixed paraffin-embedded tumor samples: a comparison to snap-frozen material using oligonucleotide microarrays. Virchows Arch. 450: 699-711.
    • (2007) Virchows Arch , vol.450 , pp. 699-711
    • Frank, M.1    Döring, C.2    Metzler, D.3    Eckerle, S.4    Hansmann, M.5
  • 13
    • 34648813274 scopus 로고    scopus 로고
    • Heterogeneous expression of Wnt/beta-catenin target genes within colorectal cancer
    • Hlubek F, Brabletz T, Budczies J, Pfeiffer S, Jung A, Kirchner T. 2007. Heterogeneous expression of Wnt/beta-catenin target genes within colorectal cancer. Int J Cancer. 121: 1941-1948.
    • (2007) Int J Cancer , vol.121 , pp. 1941-1948
    • Hlubek, F.1    Brabletz, T.2    Budczies, J.3    Pfeiffer, S.4    Jung, A.5    Kirchner, T.6
  • 15
    • 0346244044 scopus 로고    scopus 로고
    • Topoisomerase IIalpha gene (TOP2A) amplification and deletion in cancer-more common than anticipated
    • Järvinen TAH, Liu ET. 2003. Topoisomerase IIalpha gene (TOP2A) amplification and deletion in cancer-more common than anticipated. Cytopathology. 14:309-313.
    • (2003) Cytopathology , vol.14 , pp. 309-313
    • Järvinen, T.A.H.1    Liu, E.T.2
  • 17
    • 33645960993 scopus 로고    scopus 로고
    • Activation of multiple cancer-associated genes at the ERBB2 amplicon in breast cancer
    • Kauraniemi P, Kallioniemi A. 2006. Activation of multiple cancer-associated genes at the ERBB2 amplicon in breast cancer. Endocr Relat Cancer. 13:39-49.
    • (2006) Endocr Relat Cancer , vol.13 , pp. 39-49
    • Kauraniemi, P.1    Kallioniemi, A.2
  • 18
    • 1242338879 scopus 로고    scopus 로고
    • Evaluation of procedures for amplification of small-size samples for hybridization on microarrays
    • Klur S, Toy K, Williams MP, Certa U. 2004. Evaluation of procedures for amplification of small-size samples for hybridization on microarrays. Genomics. 83:508-517.
    • (2004) Genomics , vol.83 , pp. 508-517
    • Klur, S.1    Toy, K.2    Williams, M.P.3    Certa, U.4
  • 19
    • 70350718130 scopus 로고    scopus 로고
    • Methods comparison for high-resolution transcriptional analysis of archival material on Affymetrix Plus 2.0 and Exon 1.0 microarrays
    • Linton K, Hey Y, Dibben S, Miller C, Freemont A, Radford J, Pepper S. 2009. Methods comparison for high-resolution transcriptional analysis of archival material on Affymetrix Plus 2.0 and Exon 1.0 microarrays. Biotechniques. 47:587-596.
    • (2009) Biotechniques , vol.47 , pp. 587-596
    • Linton, K.1    Hey, Y.2    Dibben, S.3    Miller, C.4    Freemont, A.5    Radford, J.6    Pepper, S.7
  • 20
    • 42149130812 scopus 로고    scopus 로고
    • Acquisition of biologically relevant gene expression data by Affymetrix microarray analysis of archival formalin-fixed paraffin-embedded tumours
    • Linton KM, Hey Y, Saunders E, Jeziorska M, Denton J, Wilson CL, Swindell R, Dibben S, Miller CJ, Pepper SD, et al. 2008. Acquisition of biologically relevant gene expression data by Affymetrix microarray analysis of archival formalin-fixed paraffin-embedded tumours. Br J Cancer. 98:1403-1414.
    • (2008) Br J Cancer , vol.98 , pp. 1403-1414
    • Linton, K.M.1    Hey, Y.2    Saunders, E.3    Jeziorska, M.4    Denton, J.5    Wilson, C.L.6    Swindell, R.7    Dibben, S.8    Miller, C.J.9    Pepper, S.D.10
  • 22
    • 34547854801 scopus 로고    scopus 로고
    • The oncogene HER2: Its signaling and transforming functions and its role in human cancer pathogenesis
    • Moasser MM. 2007. The oncogene HER2: its signaling and transforming functions and its role in human cancer pathogenesis. Oncogene. 26:6469-6487.
    • (2007) Oncogene , vol.26 , pp. 6469-6487
    • Moasser, M.M.1
  • 23
    • 79952167236 scopus 로고    scopus 로고
    • Quantitative determination of estrogen receptor, progesterone receptor andHER2 mRNA in formalin-fixed paraffin-embedded tissue: A new option forpredictive biomarker assessment in breast cancer
    • In press
    • Müller BM, Kronenwett R, Hennig G, Euting H, Weber K, Bohmann K, Weichert W, Winzer KW, Kristiansen G, Petry C, et al. 2010. Quantitative determination of estrogen receptor, progesterone receptor andHER2 mRNA in formalin-fixed paraffin-embedded tissue: a new option forpredictive biomarker assessment in breast cancer. Diagn Mol Pathol. In press.
    • (2010) Diagn Mol Pathol
    • Müller, B.M.1    Kronenwett, R.2    Hennig, G.3    Euting, H.4    Weber, K.5    Bohmann, K.6    Weichert, W.7    Winzer, K.W.8    Kristiansen, G.9    Petry, C.10
  • 28
    • 41149101976 scopus 로고    scopus 로고
    • Quantitative expression profiling of highly degraded RNA from formalin-fixed, paraffin-embedded breast tumor biopsies by oligonucleotide microarrays
    • Ravo M, Mutarelli M, Ferraro L, Grober OMV, Paris O, Tarallo R, Vigilante A, Cimino D, De Bortoli M, Nola E, et al. 2008. Quantitative expression profiling of highly degraded RNA from formalin-fixed, paraffin-embedded breast tumor biopsies by oligonucleotide microarrays. Lab Invest. 88:430-440.
    • (2008) Lab Invest , vol.88 , pp. 430-440
    • Ravo, M.1    Mutarelli, M.2    Ferraro, L.3    Grober, O.M.V.4    Paris, O.5    Tarallo, R.6    Vigilante, A.7    Cimino, D.8    de Bortoli, M.9    Nola, E.10
  • 29
    • 0023340925 scopus 로고
    • Recommendation for uniform definition of an immunoreactive score (IRS) for immunohistochemical estrogen receptor detection (ER-ICA) in breast cancer tissue [in German]
    • Remmele W, Stegner HE. 1987. Recommendation for uniform definition of an immunoreactive score (IRS) for immunohistochemical estrogen receptor detection (ER-ICA) in breast cancer tissue [in German]. Pathologe. 8:138-140.
    • (1987) Pathologe , vol.8 , pp. 138-140
    • Remmele, W.1    Stegner, H.E.2
  • 30
    • 41649119636 scopus 로고    scopus 로고
    • RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: A comparison of column purification and magnetic bead-based technologies
    • Ribeiro-Silva A, Zhang H, Jeffrey SS. 2007. RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: a comparison of column purification and magnetic bead-based technologies. BMC Mol Biol. 8:118.
    • (2007) BMC Mol Biol , vol.8 , pp. 118
    • Ribeiro, S.A.1    Zhang, H.2    Jeffrey, S.S.3
  • 31
    • 33846585955 scopus 로고    scopus 로고
    • Gene expression profiling of breast cancer patients treated with docetaxel, doxorubicin, and cyclophosphamide within the GEPARTRIO trial: HER-2, but not topoisomerase II alpha and microtubule-associated protein tau, is highly predictive of tumor response
    • Rody A, Karn T, Gätje R, Ahr A, Solbach C, Kourtis K, Munnes M, Loibl S, Kissler S, Ruckhäberle E, et al. 2007. Gene expression profiling of breast cancer patients treated with docetaxel, doxorubicin, and cyclophosphamide within the GEPARTRIO trial: HER-2, but not topoisomerase II alpha and microtubule-associated protein tau, is highly predictive of tumor response. Breast. 16:86-93.
    • (2007) Breast , vol.16 , pp. 86-93
    • Rody, A.1    Karn, T.2    Gätje, R.3    Ahr, A.4    Solbach, C.5    Kourtis, K.6    Munnes, M.7    Loibl, S.8    Kissler, S.9    Ruckhäberle, E.10
  • 32
    • 33646231737 scopus 로고    scopus 로고
    • Gene expression profiles of breast cancer obtained from core cut biopsies before neoadjuvant docetaxel, adriamycin, and cyclophoshamide chemotherapy correlate with routine prognostic markers and could be used to identify predictive signatures
    • Rody A, Karn T, Gätje R, Kourtis K, Minckwitz G, Loibl S, Munnes M, Ruckhäberle E, Holtrich U, Kaufmann M, et al. 2006. Gene expression profiles of breast cancer obtained from core cut biopsies before neoadjuvant docetaxel, adriamycin, and cyclophoshamide chemotherapy correlate with routine prognostic markers and could be used to identify predictive signatures. Zentralbl Gynakol. 128:76-81.
    • (2006) Zentralbl Gynakol , vol.128 , pp. 76-81
    • Rody, A.1    Karn, T.2    Gätje, R.3    Kourtis, K.4    Minckwitz, G.5    Loibl, S.6    Munnes, M.7    Ruckhäberle, E.8    Holtrich, U.9    Kaufmann, M.10
  • 33
    • 34249050827 scopus 로고    scopus 로고
    • The erbB2+ cluster of the intrinsic gene set predicts tumor response of breast cancer patients receiving neoadjuvant chemotherapy with docetaxel, doxorubicin and cyclophosphamide within the GEPARTRIO trial
    • Rody A, Karn T, Solbach C, Gaetje R, Munnes M, Kissler S, Ruckhäberle E, Minckwitz GV, Loibl S, Holtrich U, et al. 2007. The erbB2+ cluster of the intrinsic gene set predicts tumor response of breast cancer patients receiving neoadjuvant chemotherapy with docetaxel, doxorubicin and cyclophosphamide within the GEPARTRIO trial. Breast. 16:235-240.
    • (2007) Breast , vol.16 , pp. 235-240
    • Rody, A.1    Karn, T.2    Solbach, C.3    Gaetje, R.4    Munnes, M.5    Kissler, S.6    Ruckhäberle, E.7    Minckwitz, G.V.8    Loibl, S.9    Holtrich, U.10
  • 34
    • 68849107487 scopus 로고    scopus 로고
    • Multigene classifiers, prognostic factors, and predictors of breast cancer clinical outcome
    • Ross JS. 2009. Multigene classifiers, prognostic factors, and predictors of breast cancer clinical outcome. Adv Anat Pathol. 16:204-215.
    • (2009) Adv Anat Pathol , vol.16 , pp. 204-215
    • Ross, J.S.1
  • 35
    • 27144539046 scopus 로고    scopus 로고
    • High expression of focal adhesion kinase (p125FAK) in nodenegative breast cancer is related to overexpression of HER-2/ neu and activated Akt kinase but does not predict outcome
    • Schmitz KJ, Grabellus F, Callies R, Otterbach F, Wohlschlaeger J, Levkau B, Kimmig R, Schmid KW, Baba HA. 2005. High expression of focal adhesion kinase (p125FAK) in nodenegative breast cancer is related to overexpression of HER-2/ neu and activated Akt kinase but does not predict outcome. Breast Cancer Res. 7:R194-R203.
    • (2005) Breast Cancer Res , vol.7 , pp. 194-203
    • Schmitz, K.J.1    Grabellus, F.2    Callies, R.3    Otterbach, F.4    Wohlschlaeger, J.5    Levkau, B.6    Kimmig, R.7    Schmid, K.W.8    Baba, H.A.9
  • 36
    • 33750310042 scopus 로고    scopus 로고
    • Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples
    • Scicchitano MS, Dalmas DA, Bertiaux MA, Anderson SM, Turner LR, Thomas RA, Mirable R, Boyce RW. 2006. Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples. J Histochem Cytochem. 54:1229-1237.
    • (2006) J Histochem Cytochem , vol.54 , pp. 1229-1237
    • Scicchitano, M.S.1    Dalmas, D.A.2    Bertiaux, M.A.3    Anderson, S.M.4    Turner, L.R.5    Thomas, R.A.6    Mirable, R.7    Boyce, R.W.8
  • 37
    • 44649185594 scopus 로고    scopus 로고
    • A cut-off based approach for gene expression analysis of formalin-fixed and paraffin-embedded tissue samples
    • Srivastava PK, Küffer S, Brors B, Shahi P, Li L, Kenzelmann M, Gretz N, Gröne H. 2008. A cut-off based approach for gene expression analysis of formalin-fixed and paraffin-embedded tissue samples. Genomics. 91:522-529.
    • (2008) Genomics , vol.91 , pp. 522-529
    • Srivastava, P.K.1    Küffer, S.2    Brors, B.3    Shahi, P.4    Li, L.5    Kenzelmann, M.6    Gretz, N.7    Gröne, H.8
  • 38
    • 33745834662 scopus 로고    scopus 로고
    • Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: Gene expression analyses across three different platforms
    • Sørlie T, Wang Y, Xiao C, Johnsen H, Naume B, Samaha RR, Børresen-Dale A. 2006. Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: gene expression analyses across three different platforms. BMC Genomics. 7:127.
    • (2006) BMC Genomics , vol.7 , pp. 127
    • Sørlie, T.1    Wang, Y.2    Xiao, C.3    Johnsen, H.4    Naume, B.5    Samaha, R.R.6    Børresen, D.A.7
  • 39
    • 34848854801 scopus 로고    scopus 로고
    • The complexity of genotypic alterations underlying HER2-positive breast cancer: An explanation for its clinical heterogeneity
    • Vanden Bempt I, Drijkoningen M, De Wolf-Peeters C. 2007. The complexity of genotypic alterations underlying HER2-positive breast cancer: an explanation for its clinical heterogeneity. Curr Opin Oncol. 19:552-557.
    • (2007) Curr Opin Oncol , vol.19 , pp. 552-557
    • Vanden, B.I.1    Drijkoningen, M.2    De Wolf, P.C.3


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