-
2
-
-
0033518234
-
From molecular to modular cell biology
-
L. Hartwell, J. Hopfield, S. Leibler, and A. Murray, "From molecular to modular cell biology," Nature, vol. 402, pp. 47-52, 1999.
-
(1999)
Nature
, vol.402
, pp. 47-52
-
-
Hartwell, L.1
Hopfield, J.2
Leibler, S.3
Murray, A.4
-
3
-
-
0034625005
-
Cell signaling pathways as control modules: Complexity for simplicity?
-
DOI 10.1073/pnas.97.10.5031
-
D. A. Lauffenburger, "Cell signaling pathways as control modules: Complexity for simplicity?," Proc. Natl. Acad. Sci., vol. 97, no. 10, pp. 5031-5033, May 2000. (Pubitemid 30313665)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.10
, pp. 5031-5033
-
-
Lauffenburger, D.A.1
-
4
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
DOI 10.1038/nrg2102, PII NRG2102
-
U. Alon, "Network motifs: Theory and experimental approaches," Nature, vol. 8, pp. 450-461, Jun. 2007. (Pubitemid 46789247)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.6
, pp. 450-461
-
-
Alon, U.1
-
5
-
-
0038241770
-
Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
-
DOI 10.1016/S0092-8674(03)00346-5
-
M. R. Atkinson, M. A. Savageau, J. T. Meyers, and A. J. Ninfa, "Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli," Cell, vol. 113, pp. 597-607, 2003. (Pubitemid 36694185)
-
(2003)
Cell
, vol.113
, Issue.5
, pp. 597-607
-
-
Atkinson, M.R.1
Savageau, M.A.2
Myers, J.T.3
Ninfa, A.J.4
-
6
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
M. B. Elowitz and S. Leibler, "A synthetic oscillatory network of transcriptional regulators," Nature, vol. 403, pp. 339-342, 2000.
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Elowitz, M.B.1
Leibler, S.2
-
7
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
DOI 10.1038/35002131
-
T. Gardner, C. Cantor, and J. Collins, "Construction of the genetic toggle switch in Escherichia Coli," Nature, vol. 403, pp. 339-342, 2000. (Pubitemid 30062394)
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
8
-
-
33744509927
-
Engineering life: Building a FAB for biology
-
D. Baker, G. Church, J. Collins, D. Endy, J. Jacobson, J. Keasling, P. Modrich, C. Smolke, and R. Weiss, "ENGINEERING LIFE: Building a FAB for biology," Scientific American, pp. 44-51, Jun. 2006. (Pubitemid 43872851)
-
(2006)
Scientific American
, vol.294
, Issue.6
, pp. 44-51
-
-
Baker, D.1
Church, G.2
Collins, J.3
Endy, D.4
Jacobson, J.5
Keasling, J.6
Modrich, P.7
Smolke, C.8
Weiss, R.9
-
9
-
-
33745454125
-
Synthetic biology: New engineering rules for an emerging discipline
-
E. Andrianantoandro, S. Basu, D. K. Karig, and R. Weiss, "Synthetic biology: New engineering rules for an emerging discipline," Molecular Syst. Biol., pp. 1-14, 2006.
-
(2006)
Molecular Syst. Biol.
, pp. 1-14
-
-
Andrianantoandro, E.1
Basu, S.2
Karig, D.K.3
Weiss, R.4
-
11
-
-
39149113411
-
Modular cell biology: Retroactivity and insulation
-
D. Del Vecchio, A. J. Ninfa, and E. D. Sontag, "Modular cell biology: Retroactivity and insulation," Nature/EMBO Molecular Syst. Biol., vol. 4, p. 161, 2008.
-
(2008)
Nature/EMBO Molecular Syst. Biol.
, vol.4
, pp. 161
-
-
Del Vecchio, D.1
Ninfa, A.J.2
Sontag, E.D.3
-
12
-
-
8544223537
-
Hierarchical thinking in network biology: The unbiased modularization of biochemical networks
-
DOI 10.1016/j.tibs.2004.10.001, PII S0968000404002610
-
J. A. Papin, J. L. Reed, and B. O. Palsson, "Hierarchical thinking in network biology: The unbiased modularization of biochemical networks," Trends Biochem. Sci., vol. 29, pp. 641-647, 2004. (Pubitemid 39491262)
-
(2004)
Trends in Biochemical Sciences
, vol.29
, Issue.12
, pp. 641-647
-
-
Papin, J.A.1
Reed, J.L.2
Palsson, B.O.3
-
14
-
-
3442878412
-
Modular analysis of signal transduction networks
-
J. Saez-Rodriguez, A. Kremling, H. Conzelmann, K. Bettenbrock, and E. D. Gilles, "Modular analysis of signal transduction networks," IEEE Control Syst. Mag., pp. 35-52, 2004.
-
(2004)
IEEE Control Syst. Mag.
, pp. 35-52
-
-
Saez-Rodriguez, J.1
Kremling, A.2
Conzelmann, H.3
Bettenbrock, K.4
Gilles, E.D.5
-
15
-
-
0037197886
-
The identification of functional modules from the genomic association of genes
-
DOI 10.1073/pnas.092632599
-
B. Snel, P. Bork, and M. A. Huynen, "The identification of functional modules from the genomic association of genes," Proc. Natl. Acad. Sci., vol. 99, no. 9, pp. 5890-5895, 2002. (Pubitemid 34493235)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.9
, pp. 5890-5895
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
16
-
-
34047213964
-
Systems biology - An engineering perspective
-
A. Kremling and J. Saez-Rodriguez, "Systems biology - An engineering perspective," J. Biotech., vol. 129, pp. 329-351, 2007.
-
(2007)
J. Biotech.
, vol.129
, pp. 329-351
-
-
Kremling, A.1
Saez-Rodriguez, J.2
-
17
-
-
5644222577
-
The computational versatility of proteomic signaling networks
-
H. Sauro, "The computational versatility of proteomic signaling networks," Current Proteomics, vol. 1, no. 1, pp. 67-81, 2004.
-
(2004)
Current Proteomics
, vol.1
, Issue.1
, pp. 67-81
-
-
Sauro, H.1
-
20
-
-
0024629514
-
Almost disturbance decoupling with internal stability
-
Mar.
-
S. Weiland and J. Willems, "Almost disturbance decoupling with internal stability," IEEE Trans. Autom. Control, vol. AC-34, no. 3, pp. 277-286, Mar. 1989.
-
(1989)
IEEE Trans. Autom. Control
, vol.AC-34
, Issue.3
, pp. 277-286
-
-
Weiland, S.1
Willems, J.2
-
21
-
-
0033353262
-
2 performance bounds for disturbance attenuation in nonlinear systems
-
DOI 10.1109/9.780417
-
2 performance bounds for disturbance attenuation in nonlinear systems," IEEE Trans. Autom. Control, vol. 44, no. 8, pp. 1535-1545, Aug. 1999. (Pubitemid 30508558)
-
(1999)
IEEE Transactions on Automatic Control
, vol.44
, Issue.8
, pp. 1535-1545
-
-
Isidori, A.1
Schwartz, B.2
Tarn, T.J.3
-
22
-
-
70350434810
-
Transcription factor dynamics
-
J. Ma, Ed. New York: Springer, ch. 30
-
G. L. Hager and A. K. Nagaich, "Transcription factor dynamics," in Gene Expression and Regulation, J. Ma, Ed. New York: Springer, 2006, ch. 30, pp. 493-502.
-
(2006)
Gene Expression and Regulation
, pp. 493-502
-
-
Hager, G.L.1
Nagaich, A.K.2
-
23
-
-
84980148410
-
Properties of solutions of ordinary differential equations with small parameters
-
F. Hoppensteadt, "Properties of solutions of ordinary differential equations with small parameters," Commun. Pure Appl. Math., vol. 24, pp. 807-840, 1971.
-
(1971)
Commun. Pure Appl. Math.
, vol.24
, pp. 807-840
-
-
Hoppensteadt, F.1
-
24
-
-
34250466854
-
On initial value problems for nonlinear systems of differential equations with two small parameters
-
R. E. O. Jr., "On initial value problems for nonlinear systems of differential equations with two small parameters," Archive Rat. Mech. Anal., vol. 40, pp. 209-222, 1971.
-
(1971)
Archive Rat. Mech. Anal.
, vol.40
, pp. 209-222
-
-
Jr., R.E.O.1
-
25
-
-
0004178386
-
-
Englewood Cliffs, NJ: Prentice Hall
-
H. Khalil, Nonlinear Systems. Englewood Cliffs, NJ: Prentice Hall, 2002.
-
(2002)
Nonlinear Systems
-
-
Khalil, H.1
-
26
-
-
0023734558
-
On the validity of the steady state assumption of enzyme kinetics
-
L. Segel, "On the validity of the steady state assumption of enzyme kinetics," Bull. Math. Biol., vol. 50, no. 6, pp. 579-593, Nov. 1988. (Pubitemid 18268676)
-
(1988)
Bulletin of Mathematical Biology
, vol.50
, Issue.6
, pp. 579-593
-
-
Segel, L.A.1
-
27
-
-
0344393718
-
The total quasi-steady-state approximation is valid for reversible enzyme kinetics
-
DOI 10.1016/j.jtbi.2003.09.006
-
A. Tzafriri and E. R. Edelman, "The total quasi-steady-state approximation is valid for reversible enzyme kinetics," J. Theor. Biol., vol. 226, no. 3, pp. 303-313, Feb. 2004. (Pubitemid 37476177)
-
(2004)
Journal of Theoretical Biology
, vol.226
, Issue.3
, pp. 303-313
-
-
Tzafriri, A.R.1
Edelman, E.R.2
-
28
-
-
0029681614
-
Extending the quasi-steady state approximation by changing variables
-
J. Borghans, R. de Boer, and L. Segel, "Extending the quasi-steady state approximation by changing variables," Bull. Math. Biol., vol. 58, no. 1, pp. 43-63, Jan. 1996. (Pubitemid 126690448)
-
(1996)
Bulletin of Mathematical Biology
, vol.58
, Issue.1
, pp. 43-63
-
-
Borghans, J.A.M.1
De Boer, R.J.2
Segel, L.A.3
-
29
-
-
34047240610
-
Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation
-
A. Ciliberto, F. Capuani, and J. J. Tyson, "Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation," PLOS Computat. Biol., vol. 3, no. 3, pp. 463-472, 2007.
-
(2007)
PLOS Computat. Biol.
, vol.3
, Issue.3
, pp. 463-472
-
-
Ciliberto, A.1
Capuani, F.2
Tyson, J.J.3
-
31
-
-
0033778534
-
Enzyme kinetics at high enzyme concentration
-
May
-
S. Schnell and P. Maini, "Enzyme kinetics at high enzyme concentration," Bull. Math. Biol., vol. 62, no. 3, pp. 483-499, May 2000.
-
(2000)
Bull. Math. Biol.
, vol.62
, Issue.3
, pp. 483-499
-
-
Schnell, S.1
Maini, P.2
-
32
-
-
0022429106
-
r control system of bacteriophage lambda a physical-chemical model for gene regulation
-
r control system of bacteriophage lambda a physical-chemical model for gene regulation," J. Mol. Biol., vol. 181, pp. 211-230, 1985.
-
(1985)
J. Mol. Biol.
, vol.181
, pp. 211-230
-
-
Shea, M.A.1
Ackers, G.K.2
-
33
-
-
24644456999
-
Control of MAPK signalling: From complexity to what really matters
-
DOI 10.1038/sj.onc.1208817, PII 1208817
-
J. J. Hornberg, B. Binder, F. J. Bruggeman, B. Schoeber, R. Heinrich, and H. V.Westerhoff, "Control of MAPK signaling: From complexity to what really matters," Oncogene, vol. 24, pp. 5533-5542, 2005. (Pubitemid 43119348)
-
(2005)
Oncogene
, vol.24
, Issue.36
, pp. 5533-5542
-
-
Hornberg, J.J.1
Binder, B.2
Bruggeman, F.J.3
Schoeberl, B.4
Heinrich, R.5
Westerhoff, H.V.6
-
34
-
-
0034634571
-
Understanding glucose transport by the bacterial phosphoenolpyruvate: Glucose phosphotransferase system on the basis of kinetic measurements in vitro
-
Nov.
-
J. M. Rohwer, N. D. Meadow, S. Roseman, H. V. Westerhoff, and P. W. Postma, "Understanding glucose transport by the bacterial phosphoenolpyruvate: Glucose phosphotransferase system on the basis of kinetic measurements in vitro," J. Biol. Chem., vol. 275, no. 45, pp. 34 909-34 921, Nov. 2000.
-
(2000)
J. Biol. Chem.
, vol.275
, Issue.45
, pp. 34909-34921
-
-
Rohwer, J.M.1
Meadow, N.D.2
Roseman, S.3
Westerhoff, H.V.4
Postma, P.W.5
-
35
-
-
0019321794
-
Kinetic studies of inducer binding to lac repressor/operator complex
-
Nov.
-
M. Dunaway, J. S. Olson, J. M. Rosenberg, O. B. Kallai, R. E. Dickerson, and K. S. Matthews, "Kinetic studies of inducer binding to lac repressor/operator complex," J. Biol. Chem., vol. 255, no. 21, pp. 10 115-10 119, Nov. 1980.
-
(1980)
J. Biol. Chem.
, vol.255
, Issue.21
, pp. 10115-10119
-
-
Dunaway, M.1
Olson, J.S.2
Rosenberg, J.M.3
Kallai, O.B.4
Dickerson, R.E.5
Matthews, K.S.6
-
36
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
DOI 10.1126/science.1141967
-
J. Elf, G.-W. Li, and X. Xie, "Probing transcription factor dynamics at the single-molecule level in a living cell," Science, vol. 316, no. 5828, pp. 1191-1194, May 2007. (Pubitemid 46877481)
-
(2007)
Science
, vol.316
, Issue.5828
, pp. 1191-1194
-
-
Elf, J.1
Li, G.-W.2
Xie, X.S.3
-
37
-
-
0032522290
-
Singular perturbation modeling of nonlinear processes with nonexplicit time-scale multiplicity
-
DOI 10.1016/S0009-2509(98)00006-2, PII S0009250998000062
-
A. Kumar, P. Christofides, and P. Daoutidis, "Singular perturbation modeling of nonlinear processes with non explicit time-scale multiplicity," Chem. Eng. Sci., vol. 53, pp. 1491-1504, 1998. (Pubitemid 28278757)
-
(1998)
Chemical Engineering Science
, vol.53
, Issue.8
, pp. 1491-1504
-
-
Kumar, A.1
Christofides, P.D.2
Daoutidis, P.3
-
38
-
-
0005541614
-
Nonlinear model reduction of chemical reaction systems
-
DOI 10.1002/aic.690471016
-
N. Vora and P. Daoutidis, "Nonlinear model reduction of chemical reaction systems," AIChE J., vol. 47, pp. 2320-2332, 2001. (Pubitemid 36858785)
-
(2001)
AIChE Journal
, vol.47
, Issue.10
, pp. 2320-2332
-
-
Vora, N.1
Daoutidis, P.2
-
39
-
-
3242729569
-
Quantitative analysis of signaling networks
-
DOI 10.1016/j.pbiomolbio.2004.03.002, PII S0079610704000446
-
H. M. Sauro and B. N. Kholodenko, "Quantitative analysis of signaling networks," Progress Biophys. Mol. Biol., vol. 86, pp. 5-43, 2004. (Pubitemid 38958526)
-
(2004)
Progress in Biophysics and Molecular Biology
, vol.86
, Issue.1
, pp. 5-43
-
-
Sauro, H.M.1
Kholodenko, B.N.2
-
40
-
-
28644440579
-
Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana
-
DOI 10.1038/nbt1162
-
M.-T. Chen and R. Weiss, "Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana," Nature Biotech., vol. 23, no. 12, pp. 1551-1555, 2005. (Pubitemid 41752933)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.12
, pp. 1551-1555
-
-
Chen, M.-T.1
Weiss, R.2
-
41
-
-
84889389880
-
-
New York: Wiley-VCH
-
E. Klipp, R. Herwig, A. Kowald, C.Wierling, and H. Lehrach, Systems Biology in Practice. New York: Wiley-VCH, 2005.
-
(2005)
Systems Biology in Practice
-
-
Klipp, E.1
Herwig, R.2
Kowald, A.3
Wierling, C.4
Lehrach, H.5
-
42
-
-
0346434985
-
-
Oxford, U.K.: Garland Science
-
B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walter, Molecular Biology of the Cell. Oxford, U.K.: Garland Science, 2002.
-
(2002)
Molecular Biology of the Cell
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
43
-
-
0031982205
-
His-Asp phosphotransfer signal transduction
-
T. Mizuno, "His-asp phosphotransfer signal transduction," J. Biochem., vol. 123, no. 4, pp. 555-563, Apr. 1998. (Pubitemid 28199110)
-
(1998)
Journal of Biochemistry
, vol.123
, Issue.4
, pp. 555-563
-
-
Mizuno, T.1
-
44
-
-
69249131690
-
A novel "four-component" two component signal transduction mechanism regulates developmental progression in myxococcus xanthus
-
Jun.
-
S. Jagadeesen, P. Mann, C. Schink, and P. Higgs, "A novel "four-component" two component signal transduction mechanism regulates developmental progression in myxococcus xanthus," J. Biol. Chem., pp. 21435-21445, Jun. 2009.
-
(2009)
J. Biol. Chem.
, pp. 21435-21445
-
-
Jagadeesen, S.1
Mann, P.2
Schink, C.3
Higgs, P.4
-
45
-
-
0031774448
-
Coupling physiology and gene regulation in bacteria: The phosphotransferase sugar uptake system delivers the signals
-
DOI 10.1007/s001140050555
-
J. Stülke and W. Hillen, "Coupling physiology and gene regulation in bacteria: The phosphotransferase sugar uptake system delivers the signals," Die Naturwissenschaften, vol. 85, no. 12, pp. 583-592, Dec. 1998. (Pubitemid 28562352)
-
(1998)
Naturwissenschaften
, vol.85
, Issue.12
, pp. 583-592
-
-
Stulke, J.1
Hillen, W.2
-
46
-
-
0029790351
-
Ultrasensitivity in the mitogen-activated protein kinase cascade
-
C. F. Huang and J. E. Ferrell, "Ultrasensitivity in the mitogen-activated protein kinase cascade," Proc. Natl. Acad. Sci., vol. 93, no. 19, pp. 10 078-10 083, 1996.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, Issue.19
, pp. 10078-10083
-
-
Huang, C.F.1
Ferrell, J.E.2
|