메뉴 건너뛰기




Volumn 318, Issue 2, 2011, Pages 115-122

Genomic suppression subtractive hybridization as a tool to identify differences in mycorrhizal fungal genomes

Author keywords

Genomic suppressive subtractive hybridization; Genomic variation; Mycorrhizal fungi; Oidiodendron maius; Tuber

Indexed keywords

GLUTATHIONE SYNTHASE;

EID: 79953762532     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2011.02248.x     Document Type: Review
Times cited : (5)

References (36)
  • 3
    • 17444450836 scopus 로고    scopus 로고
    • Identification and localization of differences between Escherichia coli and Salmonella typhimurium genomes by suppressive subtractive hybridization
    • Bogush ML, Velikodvorskaya TV, Lebedev YB et al. (1999) Identification and localization of differences between Escherichia coli and Salmonella typhimurium genomes by suppressive subtractive hybridization. Mol Gen Genet 262: 721-729.
    • (1999) Mol Gen Genet , vol.262 , pp. 721-729
    • Bogush, M.L.1    Velikodvorskaya, T.V.2    Lebedev, Y.B.3
  • 4
    • 15844428981 scopus 로고    scopus 로고
    • Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries
    • Diatchenko L, Lau YFC, Campbell AP et al. (1996) Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. P Natl Acad Sci USA 93: 6025-6030.
    • (1996) P Natl Acad Sci USA , vol.93 , pp. 6025-6030
    • Diatchenko, L.1    Lau, Y.F.C.2    Campbell, A.P.3
  • 5
    • 4344701189 scopus 로고    scopus 로고
    • Suppressive subtractive hybridization as a tool for identifying genetic diversity in an environmental metagenome: the rumen as a model
    • Galbraith EA, Antonopoulos DA & White BA (2004) Suppressive subtractive hybridization as a tool for identifying genetic diversity in an environmental metagenome: the rumen as a model. Environ Microbiol 6: 928-937.
    • (2004) Environ Microbiol , vol.6 , pp. 928-937
    • Galbraith, E.A.1    Antonopoulos, D.A.2    White, B.A.3
  • 6
    • 52049090834 scopus 로고    scopus 로고
    • Application of suppressive subtractive hybridization to uncover the metagenomic diversity of environmental samples
    • Galbraith EA, Antonopoulos DA & White BA (2008) Application of suppressive subtractive hybridization to uncover the metagenomic diversity of environmental samples. Method Mol Biol 410: 295-333.
    • (2008) Method Mol Biol , vol.410 , pp. 295-333
    • Galbraith, E.A.1    Antonopoulos, D.A.2    White, B.A.3
  • 8
    • 0035985917 scopus 로고    scopus 로고
    • Characterization of minute differences between genomes of strains of Penicillium nalgiovense using subtractive suppression hybridization without cloning
    • Harms C, Kase M & Hildebrandt A (2002) Characterization of minute differences between genomes of strains of Penicillium nalgiovense using subtractive suppression hybridization without cloning. Lett Appl Microbiol 35: 113-116.
    • (2002) Lett Appl Microbiol , vol.35 , pp. 113-116
    • Harms, C.1    Kase, M.2    Hildebrandt, A.3
  • 9
    • 34248662985 scopus 로고    scopus 로고
    • Use of suppression subtractive hybridisation to extend our knowledge of genome diversity in Campylobacter jejuni
    • Hepworth PJ, Leatherbarrow H, Hart CA & Winstanley C (2007) Use of suppression subtractive hybridisation to extend our knowledge of genome diversity in Campylobacter jejuni. BMC Genomics 8: 110.
    • (2007) BMC Genomics , vol.8 , pp. 110
    • Hepworth, P.J.1    Leatherbarrow, H.2    Hart, C.A.3    Winstanley, C.4
  • 10
    • 34548364044 scopus 로고    scopus 로고
    • Suppression Subtractive Hybridization (SSH) and its modifications in microbiological research
    • Huang X, Li Y, Niu Q & Zhang K (2007) Suppression Subtractive Hybridization (SSH) and its modifications in microbiological research. Appl Microbiol Biot 76: 753-760.
    • (2007) Appl Microbiol Biot , vol.76 , pp. 753-760
    • Huang, X.1    Li, Y.2    Niu, Q.3    Zhang, K.4
  • 11
    • 42149135515 scopus 로고    scopus 로고
    • Molecular phylogeny and historical biogeography of the genus Tuber, the "true truffles"
    • Jeandroz S, Murat C, Wang Y, Bonfante P & Le Tacon F (2008) Molecular phylogeny and historical biogeography of the genus Tuber, the "true truffles". J Biogeogr 35: 815-829.
    • (2008) J Biogeogr , vol.35 , pp. 815-829
    • Jeandroz, S.1    Murat, C.2    Wang, Y.3    Bonfante, P.4    Le Tacon, F.5
  • 12
    • 0028145970 scopus 로고
    • Isolation of the mating-type genes of the phytopathogenic fungus Magnaporthe grisea using genomic subtraction
    • Kang S, Chumley FG & Valent B (1994) Isolation of the mating-type genes of the phytopathogenic fungus Magnaporthe grisea using genomic subtraction. Genetics 138: 289-296.
    • (1994) Genetics , vol.138 , pp. 289-296
    • Kang, S.1    Chumley, F.G.2    Valent, B.3
  • 13
    • 0034934683 scopus 로고    scopus 로고
    • Rapid molecular typing method for the reliable detection of Asiatic black truffle (Tuber indicum) in commercialized products: fruiting bodies and mycorrhizal seedlings
    • Mabru D, Dupre C, Douet JP, Leroy P, Ravel C, Ricard JM, Medina B, Castroviejo M & Chevalier G (2001) Rapid molecular typing method for the reliable detection of Asiatic black truffle (Tuber indicum) in commercialized products: fruiting bodies and mycorrhizal seedlings. Mycorrhiza 11: 89-94.
    • (2001) Mycorrhiza , vol.11 , pp. 89-94
    • Mabru, D.1    Dupre, C.2    Douet, J.P.3    Leroy, P.4    Ravel, C.5    Ricard, J.M.6    Medina, B.7    Castroviejo, M.8    Chevalier, G.9
  • 14
    • 2342441895 scopus 로고    scopus 로고
    • Validation of the suppressive subtractive hybridization method in Mycoplasma agalactiae species by the comparison of a field strain with the type strain PG2
    • Marenda MS, Vilei EM, Poumarat F, Frey J & Berthelot X (2004) Validation of the suppressive subtractive hybridization method in Mycoplasma agalactiae species by the comparison of a field strain with the type strain PG2. Vet Res 35: 199-212.
    • (2004) Vet Res , vol.35 , pp. 199-212
    • Marenda, M.S.1    Vilei, E.M.2    Poumarat, F.3    Frey, J.4    Berthelot, X.5
  • 15
    • 14044276353 scopus 로고    scopus 로고
    • Suppression subtractive hybridization as a basis to assess Mycoplasma agalactiae and Mycoplasma bovis genomic diversity and species-specific sequences
    • Marenda MS, Sagne E, Poumarat F & Citti C (2005) Suppression subtractive hybridization as a basis to assess Mycoplasma agalactiae and Mycoplasma bovis genomic diversity and species-specific sequences. Microbiology 151: 475-489.
    • (2005) Microbiology , vol.151 , pp. 475-489
    • Marenda, M.S.1    Sagne, E.2    Poumarat, F.3    Citti, C.4
  • 16
    • 77951144839 scopus 로고    scopus 로고
    • The black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
    • Martin F, Kohler A, Murat C et al. (2010) The black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature 464: 1033-1038.
    • (2010) Nature , vol.464 , pp. 1033-1038
    • Martin, F.1    Kohler, A.2    Murat, C.3
  • 17
    • 72749127435 scopus 로고
    • The origin and behaviour of mutable loci in maize
    • McClintock B (1950) The origin and behaviour of mutable loci in maize. P Natl Acad Sci USA 36: 344-355.
    • (1950) P Natl Acad Sci USA , vol.36 , pp. 344-355
    • McClintock, B.1
  • 18
    • 77049292314 scopus 로고
    • Controlling elements and the gene
    • McClintock B (1956) Controlling elements and the gene. Cold Spring Harb Sym 21: 197-216.
    • (1956) Cold Spring Harb Sym , vol.21 , pp. 197-216
    • McClintock, B.1
  • 19
    • 61349167755 scopus 로고    scopus 로고
    • Implications of metal accumulation mechanisms to phytoremediation
    • Memon AR & Schröder P (2009) Implications of metal accumulation mechanisms to phytoremediation. Environ Sci Pollut Res Int 16: 162-175.
    • (2009) Environ Sci Pollut Res Int , vol.16 , pp. 162-175
    • Memon, A.R.1    Schröder, P.2
  • 21
    • 6344256952 scopus 로고    scopus 로고
    • Polymorphism at the ribosomal DNA ITS and its relation to postglacial re-colonization routes of the Perigord truffle Tuber melanosporum
    • Murat C, Diez J, Luis P, Delaruelle C, Dupre C, Chevalier G, Bonfante P & Martin F (2004) Polymorphism at the ribosomal DNA ITS and its relation to postglacial re-colonization routes of the Perigord truffle Tuber melanosporum. New Phytol 164: 401-411.
    • (2004) New Phytol , vol.164 , pp. 401-411
    • Murat, C.1    Diez, J.2    Luis, P.3    Delaruelle, C.4    Dupre, C.5    Chevalier, G.6    Bonfante, P.7    Martin, F.8
  • 22
    • 43449087914 scopus 로고    scopus 로고
    • Is the Perigord black truffle threatened by an invasive species? We dreaded it and it has happened!
    • Murat C, Zampieri E, Vizzini A & Bonfante P (2008) Is the Perigord black truffle threatened by an invasive species? We dreaded it and it has happened!. New Phytol 178: 699-702.
    • (2008) New Phytol , vol.178 , pp. 699-702
    • Murat, C.1    Zampieri, E.2    Vizzini, A.3    Bonfante, P.4
  • 23
    • 59149104032 scopus 로고    scopus 로고
    • Investigating arsenic susceptibility from a genetic perspective in Drosophila reveals a key role for glutathione synthetase
    • Ortiz JGM, Opoka R, Kane D & Cartwright IL (2009) Investigating arsenic susceptibility from a genetic perspective in Drosophila reveals a key role for glutathione synthetase. Toxicol Sci 107: 416-426.
    • (2009) Toxicol Sci , vol.107 , pp. 416-426
    • Ortiz, J.G.M.1    Opoka, R.2    Kane, D.3    Cartwright, I.L.4
  • 24
    • 0032893753 scopus 로고    scopus 로고
    • Rapid molecular approach for a reliable identification of Tuber spp. Ectomycorrhizae
    • Paolocci F, Rubini A, Granetti A & Arcioni S (1999) Rapid molecular approach for a reliable identification of Tuber spp. Ectomycorrhizae. FEMS Microbiol Ecol 28: 23-30.
    • (1999) FEMS Microbiol Ecol , vol.28 , pp. 23-30
    • Paolocci, F.1    Rubini, A.2    Granetti, A.3    Arcioni, S.4
  • 25
    • 0001772524 scopus 로고    scopus 로고
    • Isolation by genomic subtraction of subspecies-specific DNA probes from Verticllium dahliae
    • Patterson NA & Dobinson KF (1998) Isolation by genomic subtraction of subspecies-specific DNA probes from Verticllium dahliae. Nature 45: 41-42.
    • (1998) Nature , vol.45 , pp. 41-42
    • Patterson, N.A.1    Dobinson, K.F.2
  • 27
  • 29
    • 48149115936 scopus 로고    scopus 로고
    • Heavy metal tolerance and accumulation in Indian mustard (Brassica juncea L.) expressing bacterial gamma-glutamylcysteine synthetase or glutathione synthetase
    • Reisinger S, Schiavon M, Terry N & Pilon-Smits EA (2008) Heavy metal tolerance and accumulation in Indian mustard (Brassica juncea L.) expressing bacterial gamma-glutamylcysteine synthetase or glutathione synthetase. Int J Phytoremediat 10: 440-454.
    • (2008) Int J Phytoremediat , vol.10 , pp. 440-454
    • Reisinger, S.1    Schiavon, M.2    Terry, N.3    Pilon-Smits, E.A.4
  • 32
    • 78650794779 scopus 로고    scopus 로고
    • Specific regions in the Sod1 locus of the ericoid mycorrhizal fungus Oidiodendron maius from metal enriched soils show different sequence polymorphism
    • Vallino M, Zampieri E, Murat C, Girlanda M, Picarella S, Pitet M, Portis E, Martino E & Perotto S (2011) Specific regions in the Sod1 locus of the ericoid mycorrhizal fungus Oidiodendron maius from metal enriched soils show different sequence polymorphism. FEMS Microbiol Ecol 75: 321-331.
    • (2011) FEMS Microbiol Ecol , vol.75 , pp. 321-331
    • Vallino, M.1    Zampieri, E.2    Murat, C.3    Girlanda, M.4    Picarella, S.5    Pitet, M.6    Portis, E.7    Martino, E.8    Perotto, S.9
  • 34
    • 34548557170 scopus 로고    scopus 로고
    • The genetic basis of zinc tolerance in the metallophyte Arabidopsis halleri ssp. halleri (Brassicaceae): an analysis of quantitative trait loci
    • Willems G, Dräger DB, Courbot M, Godé C, Verbruggen N & Saumitou-Laprade P (2007) The genetic basis of zinc tolerance in the metallophyte Arabidopsis halleri ssp. halleri (Brassicaceae): an analysis of quantitative trait loci. Genetics 176: 659-674.
    • (2007) Genetics , vol.176 , pp. 659-674
    • Willems, G.1    Dräger, D.B.2    Courbot, M.3    Godé, C.4    Verbruggen, N.5    Saumitou-Laprade, P.6
  • 35
    • 0036251690 scopus 로고    scopus 로고
    • Spot the difference: applications of subtractive hybridisation to the study of bacterial pathogens
    • Winstanley C (2002) Spot the difference: applications of subtractive hybridisation to the study of bacterial pathogens. J Med Microbiol 51: 459-467.
    • (2002) J Med Microbiol , vol.51 , pp. 459-467
    • Winstanley, C.1
  • 36
    • 67650754432 scopus 로고    scopus 로고
    • PCR primers specific for the genus Tuber reveal the presence of several truffle species in a truffle-ground
    • Zampieri E, Mello A, Bonfante P & Murat C (2009) PCR primers specific for the genus Tuber reveal the presence of several truffle species in a truffle-ground. FEMS Microbiol Lett 297: 67-72.
    • (2009) FEMS Microbiol Lett , vol.297 , pp. 67-72
    • Zampieri, E.1    Mello, A.2    Bonfante, P.3    Murat, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.