Genome size evolution at the speciation level: The cryptic species complex Brachionus plicatilis (Rotifera)

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Stelzer, Claus Peter ^a   Riss, Simone ^a   Stadler, Peter ^a  

^a ERICH SCHMID INSTITUTE OF MATERIALS SCIENCE   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

BODY SIZE; FLOW CYTOMETRY; GENOME; INVERTEBRATE; PHYLOGENETICS; REPRODUCTIVE ISOLATION; SIZE DISTRIBUTION; SPECIES COMPLEX; TAXONOMY; ZOOPLANKTON;

ANIMALIA; BRACHIONUS PLICATILIS; ROTIFERA;

ANIMAL; ARTICLE; CLASSIFICATION; GENETICS; GENOME; ISOLATION AND PURIFICATION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; ROTIFERA; SPECIES DIFFERENTIATION;

ANIMALS; EVOLUTION, MOLECULAR; GENETIC SPECIATION; GENOME, HELMINTH; MOLECULAR SEQUENCE DATA; PHYLOGENY; ROTIFERA;

EID: 79953725418     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-90     Document Type: Article

References (53)

1. Synergy between sequence and size in large-scale genomics. TR Gregory, Nature Reviews Genetics 2005 6 699 708 10.1038/nrg1674 16151375 (Pubitemid 41192321)
2. M Lynch, The origins of genome architecture Sunderland, MA: Sinauer 2007
3. Genome size evolution in animals. TR Gregory, The Evolution of the Genome San Diego, CA: Elsevier, Gregory TR, 2005
4. The mode and tempo of genome size evolution in eukaryotes. MJ Oliver D Petrov D Ackerly P Falkowski OM Schofield, Genome Research 2007 17 594 601 10.1101/gr.6096207 17420184 (Pubitemid 46715509)
5. The origins of genome complexity. M Lynch JS Conery, Science 2003 302 1401 1404 10.1126/science.1089370 14631042 (Pubitemid 37452183)
6. Evolutionary implications of the relationship between genome size and body size in flatworms and copepods. TR Gregory PD Hebert J Kolasa, Heredity 2000 84 201 208 10.1046/j.1365-2540.2000.00661.x 10762390 (Pubitemid 30177541)
7. The evolution of genome size in ants. ND Tsutsui AV Suarez JC Spagna S Johnston, BMC Evolutionary Biology 2008 8 - 10.1186/1471-2148-8-64 18302783
8. Differences in genome size between closely related species: The Drosophila melanogaster species subgroup. M Boulesteix M Weiss C Biemont, Molecular Biology and Evolution 2006 23 162 167 10.1093/molbev/msj012 16151184 (Pubitemid 41785963)
9. Analysis of Drosophila species genome size and satellite DNA content reveals significant differences among strains as well as between species. G Bosco P Campbell JT Leiva-Neto TA Markow, Genetics 2007 177 1277 1290 10.1534/genetics.107.075069 18039867 (Pubitemid 350277032)
10. The evolutionary fate and consequences of duplicate genes. M Lynch JS Conery, Science 2000 290 1151 1155 10.1126/science.290.5494.1151 11073452
11. Genome duplication, divergent resolution and speciation. JS Taylor Y Van de Peer A Meyer, Trends in Genetics 2001 17 299 301 10.1016/S0168-9525(01)02318- 6 11377777 (Pubitemid 32497101)
12. Genome Size and Species Diversification. K Kraaijeveld, Evolutionary Biology 2010 37 227 233 10.1007/s11692-010-9093-4
13. Speciation in ancient cryptic species complexes: Evidence from the molecular phylogeny of Brachionus plicatilis (Rotifera). A Gomez M Serra GR Carvalho DH Lunt, Evolution 2002 56 1431 1444 12206243 (Pubitemid 34881594)
14. An analysis of species boundaries and biogeographic patterns in a cryptic species complex: The rotifer - Brachionus plicatilis. E Suatoni S Vicario S Rice T Snell A Caccone, Molecular Phylogenetics and Evolution 2006 41 86 98 10.1016/j.ympev.2006.04.025 16815046 (Pubitemid 44311537)
15. Extreme levels of hidden diversity in microscopic animals (Rotifera) revealed by DNA taxonomy. D Fontaneto M Kaya EA Herniou TG Barraclough, Molecular Phylogenetics and Evolution 2009 53 182 189 10.1016/j.ympev.2009.04. 011 19398026
16. Sibling species in the sea. N Knowlton, Annual Review of Ecology and Systematics 1993 24 189 216 10.1146/annurev.es.24.110193.001201
17. The Monopolization Hypothesis and the dispersal-gene flow paradox in aquatic organisms. L De Meester A Gomez B Okamura K Schwenk, Acta Oecologica-International Journal of Ecology 2002 23 121 135 10.1016/S1146- 609X(02)01145-1 (Pubitemid 34793612)
18. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. PD Hebert EH Penton JM Burns DH Janzen W Hallwachs, Proc Natl Acad Sci USA 2004 101 14812 14817 10.1073/pnas.0406166101 15465915 (Pubitemid 39410757)
19. On the taxonomy of three sympatric sibling species of the Brachionus plicatilis (Rotifera) complex from Spain, with the description of B-ibericus n. sp. J Ciros-Perez A Gomez M Serra, Journal of Plankton Research 2001 23 1311 1328 10.1093/plankt/23.12.1311 (Pubitemid 34034389)
20. Disentangling the morphological stasis in two rotifer species of the Brachionus plicatilis species complex. D Fontaneto I Giordani G Melone M Serra, Hydrobiologia 2007 583 297 307 10.1007/s10750-007-0573-1 (Pubitemid 46525438)
21. Coexistence of cryptic rotifer species: ecological and genetic characterisation of Brachionus plicatilis. R Ortells A Gomez M Serra, Freshwater Biology 2003 48 2194 2202 10.1046/j.1365-2427.2003.01159.x (Pubitemid 38012633)
22. Behavioral reproductive isolation among populations of the rotifer Brachionus plicatilis. TW Snell CA Hawkinson, Evolution 1983 37 1294 1305 10.2307/2408849
23. Removal of surface glycoproteins and transfer among Brachionus species. TW Snell CP Stelzer, Hydrobiologia 2005
24. Body size variation among strains of the rotifer Brachionus plicatilis. TW Snell K Carrillo, Aquaculture 1984 37 359 367 10.1016/0044-8486(84)90300-4
25. Specificity of the crowding response in the Brachionus plicatilis species complex. CP Stelzer TW Snell, Limnology and Oceanography 2006 51 125 130 10.4319/lo.2006.51.1.0125 (Pubitemid 43259700)
26. A protein signal triggers sexual reproduction in Brachionus plicatilis (Rotifera). TW Snell J Kubanek W Carter AB Payne J Kim M Hicks CP Stelzer, Marine Biology 2006 149 763 773 10.1007/s00227-006-0251-2 (Pubitemid 43989367)
27. Conservation of progesterone hormone function in invertebrate reproduction. EP Stout JJ La Clair TW Snell TL Shearer J Kubanek, Proceedings of the National Academy of Sciences of the United States of America 2010 107 11859 11864 10.1073/pnas.1006074107 20547846
28. Genetic determinants of mate recognition in Brachionus manjavacas (Rotifera). TW Snell TL Shearer HA Smith J Kubanek KE Gribble DBM Welch, BMC Biology 2009 7 10.1186/1741-7007-7-60 19740420
29. Phylogeography and regional endemism of a passively dispersing zooplankter: mtDNA variation of resting egg banks. A Gomez GR Carvalho DH Lunt, Proceedings Of The Royal Society Of London Series B-Biological Sciences 2000 267 2189 2197 10.1098/rspb.2000.1268
30. Global isolation by distance despite strong regional phylogeography in a small metazoan. S Mills DH Lunt A Gomez, BMC Evolutionary Biology 2007 7 225 10.1186/1471-2148-7-225 17999774
31. Selection of low investment in sex in a cyclically parthenogenetic rotifer. MJ Carmona N Dimas-Flores EM Garcia-Roger M Serra, Journal of Evolutionary Biology 2009 22 1975 1983 10.1111/j.1420-9101.2009.01811.x 19678864
32. Selection on life-history traits and genetic population divergence in rotifers. S Campillo EM Garcia-Roger MJ Carmona A Gomez M Serra, Journal of Evolutionary Biology 2009 22 2542 2553 10.1111/j.1420-9101.2009.01871.x 19878499
33. A method for testing the assumption of phylogenetic independence in comparative data. E Abouheif, Evolutionary Ecology Research 1999 1 895 909 (Pubitemid 129551969)
34. Phylogenies and the comparative method. J Felsenstein, The American Naturalist 1985 125 1 15 10.1086/284325 (Pubitemid 16276188)
35. A first assessment of genome size diversity in Monogonont rotifers. CP Stelzer, Hydrobiologia 2011 662 77 82 10.1007/s10750-010-0487-1
36. Genome downsizing in polyploid plants. IJ Leitch MD Bennett, Biological Journal of the Linnean Society 2004 82 651 663 10.1111/j.1095-8312.2004.00349.x (Pubitemid 39123351)
37. Nuclear DNA amount and genome downsizing in natural and synthetic allopolyploids of the genera Aegilops and Triticum. T Eilam Y Anikster E Millet J Manisterski M Feldman, Genome 2008 51 616 627 10.1139/G08-043 18650951
38. Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. B Piegu R Guyot N Picault A Roulin A Saniyal H Kim K Collura DS Brar S Jackson RA Wing O Panaud, Genome Research 2006 16 1262 1269 10.1101/gr.5290206 16963705 (Pubitemid 44506959)
39. Intraspecific variation in genome size in angiosperms: Identifiving its existence. J Greilhuber, Annals of Botany 2005 95 91 98 10.1093/aob/mci004 15596458 (Pubitemid 41214451)
40. When does intraspecific C-value variation become taxonomically significant? BG Murray, Annals of Botany 2005 95 119 125 10.1093/aob/mci007 15596461 (Pubitemid 41214454)
41. Understanding intraspecific variation in genome size in plants. P Smarda P Bures, Preslia 2010 82 41 61
42. Genome size and genome evolution in diploid Triticeae species. T Eilam Y Anikster E Millet J Manisterski O Sag-Assif M Feldman, Genome 2007 50 1029 1037 10.1139/G07-083 18059548
43. The right stuff: evidence for an 'optimal' genome size in a wild grass population. JM Beaulieu, New Phytologist 2010 187 883 885 10.1111/j.1469-8137. 2010.03412.x 20707851
44. Mongolian Rotifers (Rotifera, Monogononta): a Checklist with Annotations on Global Distribution and Autecology. CD Jersabek E Bolortsetseg, Proceedings of the Academy of Natural Sciences of Philadelphia 2010 159 119 168 10.1635/053.159.0108
45. Loss of sexual reproduction and dwarfing in a small metazoan. CP Stelzer J Schmidt A Wiedlroither S Riss, Plos ONE 2010 5 12854 10.1371/journal.pone. 0012854 20862222
46. Animal Genome Size Database. TR Gregory, 2010 http://www.genomesize.com
47. Nuclear DNA content and genome size of trout and human. J Dolezel J Bartos H Voglmayr J Greilhuber, Cytometry Part A 2003 51A 127 128 10.1002/cyto.a.10013
48. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. OM Folmer M Black W Hoeh R Lutz RC Vrijenhoek, Mol Mar Biol Biotechnol 1994 3 294 299 7881515
49. The polymerase chain reaction. SR Palumbi, Molecular Systematics Sunderland, MA: Sinauer, Hillis DM, Moritz D, Marble BK, 1996 205 247
50. DL Swofford, PAUP*: phylogenetic analysis using parsimony (*and other methods) Sunderland, MA: Ver. 4. Sinauer 1998
51. Modeltest: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 817 818 10.1093/bioinformatics/14.9.817 9918953 (Pubitemid 28552116)
52. Mesquite: a modular system for evolutionary analysis (version 2.73). WP Maddison DR Maddison, 2006 http://mesquiteproject.org
53. PDAP Package of Mesquite (version 1.15). PE Midford T Garland WP Maddison, 2005 http://www.mesquiteproject.org/pdap-mesquite/