Arm-specific dynamics of chromosome evolution in malaria mosquitoes

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Sharakhova, Maria V ^a   Xia, Ai ^a,b   Leman, Scotland C ^a   Sharakhov, Igor V ^a  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^b NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARMS RACE; CHROMOSOME; GENOME; MALARIA; MOSQUITO; NATURAL SELECTION; PHENOTYPIC PLASTICITY; POLYMORPHISM;

ANOPHELES FUNESTUS; ANOPHELES GAMBIAE; ANOPHELES STEPHENSI;

ANIMAL; ARTICLE; CHROMOSOME INVERSION; CHROMOSOME MAP; GENETIC POLYMORPHISM; GENETICS; INSECT CHROMOSOME; MOLECULAR EVOLUTION; MOSQUITO;

ANIMALS; CHROMOSOME INVERSION; CHROMOSOME MAPPING; CHROMOSOMES, INSECT; CULICIDAE; EVOLUTION, MOLECULAR; POLYMORPHISM, GENETIC;

EID: 79953718379     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-91     Document Type: Article

References (43)

1. Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions. MA Noor DA Garfield SW Schaeffer CA Machado, Genetics 2007 177 1417 1428 10.1534/genetics.107.070672 18039875 (Pubitemid 350277041)
2. Revisiting the impact of inversions in evolution: from population genetic markers to drivers of adaptive shifts and speciation? AA Hoffmann L Rieseberg, Annual Review of Ecology, Evolution, and Systematics 2008 39 21 42 10.1146/annurev.ecolsys.39.110707.173532 20419035
3. Chromosomal inversions and species differences: when are genes affecting adaptive divergence and reproductive isolation expected to reside within inversions? JL Feder P Nosil, Evolution 2009 63 3061 3075 10.1111/j.1558-5646. 2009.00786.x 19656182
4. Clinal patterns of chromosomal inversion polymorphisms in Drosophila subobscura are partly associated with thermal preferences and heat stress resistance. C Rego J Balanya I Fragata M Matos EL Rezende M Santos, Evolution 2010 64 385 397 10.1111/j.1558-5646.2009.00835.x 19744119
5. Rates and patterns of chromosomal evolution in Drosophila pseudoobscura and D. miranda. C Bartolome B Charlesworth, Genetics 2006 173 779 791 10.1534/genetics.105.054585 16547107 (Pubitemid 43945896)
6. Genomic exploration of the hemiascomycetous yeasts: 18. Comparative analysis of chromosome maps and synteny with Saccharomyces cerevisiae. B Llorente A Malpertuy C Neuveglise J de Montigny M Aigle F Artiguenave G Blandin M Bolotin-Fukuhara E Bon P Brottier,, et al. FEBS Lett 2000 487 101 112 10.1016/S0014-5793(00)02289-4 11152893 (Pubitemid 32008726)
7. Testing chromosomal phylogenies and inversion breakpoint reuse in Drosophila. J Gonzalez F Casals A Ruiz, Genetics 2007 175 167 177 10.1534/genetics.106.062612 17028333 (Pubitemid 46168562)
8. Principles of genome evolution in the Drosophila melanogaster species group. JM Ranz D Maurin YS Chan M von Grotthuss LW Hillier J Roote M Ashburner CM Bergman, PLoS Biol 2007 5 152 10.1371/journal.pbio.0050152 17550304
9. Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. DM Larkin G Pape R Donthu L Auvil M Welge HA Lewin, Genome Res 2009 19 770 777 10.1101/gr.086546.108 19342477
10. Grass genome organization and evolution. KM Devos, Curr Opin Plant Biol 2010 13 139 145 10.1016/j.pbi.2009.12.005 20064738
11. Genome landscape and evolutionary plasticity of chromosomes in malaria mosquitoes. A Xia M Sharakhova S Leman Z Tu J Bailey C Smith IV Sharakhov, PLoS ONE 2010 5 10592 10.1371/journal.pone.0010592 20485676
12. Inversions and gene order shuffling in Anopheles gambiae and A. funestus. IV Sharakhov AC Serazin OG Grushko A Dana N Lobo ME Hillenmeyer R Westerman J Romero-Severson C Costantini N Sagnon,, et al. Science 2002 298 182 185 10.1126/science.1076803 12364797
13. Chromosomal plasticity and evolutionary potential in the malaria vector Anopheles gambiae sensu stricto: insights from three decades of rare paracentric inversions. M Pombi B Caputo F Simard MA Di Deco M Coluzzi A della Torre C Costantini NJ Besansky V Petrarca, BMC Evol Biol 2008 8 309 10.1186/1471-2148-8- 309 19000304
14. A polytene chromosome analysis of the Anopheles gambiae species complex. M Coluzzi A Sabatini A della Torre MA Di Deco V Petrarca, Science 2002 298 1415 1418 10.1126/science.1077769 12364623 (Pubitemid 35346140)
15. Chromosomal inversions in Anopheles stephensi. M Coluzzi M Di Deco G Cancrini, Parassitologia 1973 15 129 136 4788354
16. Inversion polymorphisms in natural populations of Anopheles stephensi. F Mahmood RK Sakai, Can J Genet Cytol 1984 26 538 546 6498600
17. Chromosomal and bionomic heterogeneities suggest incipient speciation in Anopheles funestus from Burkina Faso. C Costantini N Sagnon E Ilboudo-Sanogo M Coluzzi D Boccolini, Parassitologia 1999 41 595 611 10870569 (Pubitemid 129586568)
18. A microsatellite map of the African human malaria vector Anopheles funestus. I Sharakhov O Braginets O Grushko A Cohuet WM Guelbeogo D Boccolini M Weill C Costantini N Sagnon D Fontenille,, et al. J Hered 2004 95 29 34 10.1093/jhered/esh011 14757727 (Pubitemid 38199289)
19. Gene flow between chromosomal forms of the malaria vector Anopheles funestus in Cameroon, Central Africa, and its relevance in malaria fighting. A Cohuet I Dia F Simard M Raymond F Rousset C Antonio-Nkondjio PH Awono-Ambene CS Wondji D Fontenille, Genetics 2005 169 301 311 10.1534/genetics.103.025031 15677749 (Pubitemid 40239172)
20. Habitat suitability and ecological niche profile of major malaria vectors in Cameroon. D Ayala C Costantini K Ose GC Kamdem C Antonio-Nkondjio JP Agbor P Awono-Ambene D Fontenille F Simard, Malar J 2009 8 307 10.1186/1475-2875-8-307 20028559
21. Chromosomal inversions, natural selection and adaptation in the malaria vector Anopheles funestus. D Ayala MC Fontaine A Cohuet D Fontenille R Vitalis F Simard, Mol Biol Evol 2011 28 745 58 10.1093/molbev/msq248 20837604
22. Chromosomal inversion polymorphisms and adaptation. AA Hoffmann CM Sgro AR Weeks, Trends Ecol Evol 2004 19 482 488 10.1016/j.tree.2004.06.013 16701311 (Pubitemid 39151668)
23. The evolutionary dynamics of eukaryotic gene order. LD Hurst C Pal MJ Lercher, Nat Rev Genet 2004 5 299 310 10.1038/nrg1319 15131653 (Pubitemid 38435625)
24. Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila. M von Grotthuss M Ashburner JM Ranz, Genome Res 2010 20 1084 1096 10.1101/gr.103713.109 20601587
25. Genome-scale evolution: reconstructing gene orders in the ancestral species. G Bourque PA Pevzner, Genome Res 2002 12 26 36 11779828 (Pubitemid 34065587)
26. GRIMM: genome rearrangements web server. G Tesler, Bioinformatics 2002 18 492 493 10.1093/bioinformatics/18.3.492 11934753 (Pubitemid 34284955)
27. Chromosomal inversions in Anopheles stephensi Liston - a malaria mosquito. K Gayathri Devi J Shetty, J Cytol Genet 1992 27 153 161
28. Segmental duplication implicated in the genesis of inversion 2Rj of Anopheles gambiae. MB Coulibaly NF Lobo MC Fitzpatrick M Kern O Grushko DV Thaner SF Traore FH Collins NJ Besansky, PLoS ONE 2007 2 849 10.1371/journal.pone.0000849 17786220
29. The population genomics of trans-specific inversion polymorphisms in Anopheles gambiae. BJ White C Cheng D Sangare NF Lobo FH Collins NJ Besansky, Genetics 2009 183 275 288 10.1534/genetics.109.105817 19581444
30. Breakpoint structure reveals the unique origin of an interspecific chromosomal inversion (2La) in the Anopheles gambiae complex. IV Sharakhov BJ White MV Sharakhova J Kayondo NF Lobo F Santolamazza A Della Torre F Simard FH Collins NJ Besansky, Proc Natl Acad Sci USA 2006 103 6258 6262 10.1073/pnas.0509683103 16606844
31. Introduction. CB Krimbas JR Powell, Drosophila Inversion Polymorphism, CRC Press 1992 1 52
32. The probability of parallel evolution. HA Orr, Evolution 2005 59 216 220 15792240 (Pubitemid 40181312)
33. Analysis of the complete mitochondrial DNA from Anopheles funestus: an improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution. J Krzywinski OG Grushko NJ Besansky, Mol Phylogenet Evol 2006 39 417 423 10.1016/j.ympev.2006.01.006 16473530
34. Interpretation of variation in ovarian polytene chromosomes of Anopheles funestus Giles, A. parensis Gillies, and A. aruni? C Green R Hunt, Genetica 1980 51 187 195 10.1007/BF00121610
35. Chromosomal differentiation and adaptation to human environments in the Anopheles gambiae complex. M Coluzzi A Sabatini V Petrarca MA Di Deco, Trans R Soc Trop Med Hyg 1979 73 483 497 10.1016/0035-9203(79)90036-1 394408 (Pubitemid 10245985)
36. Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila. E Blanco M Pignatelli S Beltran A Punset S Perez-Lluch F Serras R Guigo M Corominas, Genome Biol 2008 9 134 18783608
37. Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes. A Bhutkar SW Schaeffer SM Russo M Xu TF Smith WM Gelbart, Genetics 2008 179 1657 1680 10.1534/genetics.107.086108 18622036
38. Positive correlation between gene coexpression and positional clustering in the zebrafish genome. YK Ng W Wu L Zhang, BMC Genomics 2009 10 42 10.1186/1471-2164-10-42 19159490
39. Long-range regulation is a major driving force in maintaining genome integrity. E Mongin K Dewar M Blanchette, BMC Evol Biol 2009 9 203 10.1186/1471-2148-9-203 19682388
40. VectorBase: a data resource for invertebrate vector genomics. D Lawson P Arensburger P Atkinson NJ Besansky RV Bruggner R Butler KS Campbell GK Christophides S Christley E Dialynas,, et al. Nucleic Acids Res 2009 37 583 587 10.1093/nar/gkn857 19028744
41. High-resolution cytogenetic map for the African malaria vector Anopheles gambiae. P George MV Sharakhova IV Sharakhov, Insect Mol Biol 2010 19 675 682 10.1111/j.1365-2583.2010.01025.x 20609021
42. Bayesian Theory. JM Bernardo AFM Smith, Chichester, Wiley 1994
43. Monte Carlo Statistical Methods. Robert, Cassella New York, Springer 1999