Fluctuation and response in biology

Cellular and Molecular Life Sciences

Volumn 68, Issue 6, 2011, Pages 1005-1010

  Lehner, Ben ^a   Kaneko, Kunihiko ^b  

^a CENTRE FOR GENOMIC REGULATION CRG   (Spain)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Canalization; Evolvability; Fluctuation; Gene expression; Genetic assimilation; Noise; Plasticity; Response

Indexed keywords

BEHAVIOR; BIOLOGY; ENVIRONMENTAL FACTOR; FLUCTUATION RESPONSE RELATIONSHIP; GENE EXPRESSION; GENETIC VARIABILITY; MOLECULAR EVOLUTION; NONHUMAN; PARAMETERS OF MEASUREMENT AND ANALYSIS; PLASTICITY; REVIEW; THEORY;

BACTERIA; EVOLUTION, MOLECULAR; GENE EXPRESSION; MODELS, BIOLOGICAL; STOCHASTIC PROCESSES; SYSTEMS BIOLOGY; YEASTS;

EID: 79953692978     PISSN: 1420682X     EISSN: 14209071     Source Type: Journal    
DOI: 10.1007/s00018-010-0589-y     Document Type: Review

References (32)

1. B Di Ventura C Lemerle K Michalodimitrakis L Serrano 2006 From in vivo to in silico biology and back Nature 443 527 533 1:CAS:528:DC%2BD28XhtVCiu7zN 10.1038/nature05127 17024084 (Pubitemid 44527283)
2. CH Waddington 1942 Canalization of development and the inheritance of acquired characters Nature 150 563 565 10.1038/150563a0
3. Kirschner M, Gerhart J (2005) The plausibility of life. Yale University Press, New Haven
4. Kaneko K (2006) Life: an introduction to complex systems biology. Springer, Berlin, Heidelberg, New York
5. M Pigliucci CJ Murren CD Schlichting 2006 Phenotypic plasticity and evolution by genetic assimilation J Exp Biol 209 2362 2367 10.1242/jeb.02070 16731812 (Pubitemid 44065530)
6. SL Rutherford S Lindquist 1998 Hsp90 as a capacitor for morphological evolution Nature 396 336 342 1:CAS:528:DyaK1cXnvVaksLY%3D 10.1038/24550 9845070 (Pubitemid 28557387)
7. Wagner A (2005) Robustness and evolvability in living systems. Princeton University Press, Princeton
8. M Kirschner J Gerhart 1998 Evolvability Proc Natl Acad Sci USA 95 8420 8427 1:CAS:528:DyaK1cXkvFamtb0%3D 10.1073/pnas.95.15.8420 9671692 (Pubitemid 28350502)
9. Einstein A (1926) In: Furth R, Cowper AD (eds) Investigation on the theory of Brownian movement. Courier Dover Publications, New York, (reprinted 1956)
10. Kubo R, Toda M, Hashitsume N (1985) Statistical physics II. Springer, Berlin Heidelberg New York
11. K Kaneko 2009 Relationship among phenotypic plasticity, phenotypic fluctuations, robustness, and evolvability; Waddington's legacy revisited under the spirit of Einstein J Biosci 34 529 542 10.1007/s12038-009-0072-9 19920339
12. K Sato Y Ito T Yomo K Kaneko 2003 On the relation between fluctuation and response in biological systems Proc Natl Acad Sci USA 100 14086 14090 1:CAS:528:DC%2BD3sXpsFGit7c%3D 10.1073/pnas.2334996100 14615583 (Pubitemid 37499195)
13. S Ciliberti OC Martin A Wagner 2007 Robustness can evolve gradually in complex regulatory gene networks with varying topology PLoS Comput Biol 3 e15 10.1371/journal.pcbi.0030015 17274682
14. L Glass SA Kauffman 1973 The logical analysis of continuous, non-linear biochemical control networks J Theor Biol 39 103 129 1:CAS:528: DyaE3sXhsFGms7k%3D 10.1016/0022-5193(73)90208-7 4741704
15. I Salazar-Ciudad J Garcia-Fernandez RV Sole 2000 Gene networks capable of pattern formation: from induction to reaction-diffusion J Theor Biol 205 587 603 1:CAS:528:DC%2BD3cXlsVSrsr4%3D 10.1006/jtbi.2000.2092 10931754 (Pubitemid 30627572)
16. K Kaneko 2007 Evolution of robustness to noise and mutation in gene expression dynamics PLoS One 2 e434 10.1371/journal.pone.0000434 17502916
17. K Kaneko 2008 Shaping robust system through evolution Chaos 18 026112 10.1063/1.2912458 18601514
18. JR Newman S Ghaemmaghami J Ihmels DK Breslow M Noble JL DeRisi JS Weissman 2006 Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise Nature 441 840 846 1:CAS:528: DC%2BD28XlvVGltr0%3D 10.1038/nature04785 16699522
19. J Ihmels G Friedlander S Bergmann O Sarig Y Ziv N Barkai 2002 Revealing modular organization in the yeast transcriptional network Nat Genet 31 370 377 1:CAS:528:DC%2BD38Xls1OrsL8%3D 12134151 (Pubitemid 35154445)
20. CR Landry B Lemos SA Rifkin WJ Dickinson DL Hartl 2007 Genetic properties influencing the evolvability of gene expression Science 317 118 121 1:CAS:528:DC%2BD2sXnt1SjtLY%3D 10.1126/science.1140247 17525304 (Pubitemid 47056469)
21. I Tirosh A Weinberger M Carmi N Barkai 2006 A genetic signature of interspecies variations in gene expression Nat Genet 38 830 834 1:CAS:528:DC%2BD28XmtFyru7w%3D 10.1038/ng1819 16783381 (Pubitemid 43980606)
22. JK Choi YJ Kim 2009 Intrinsic variability of gene expression encoded in nucleosome positioning sequences Nat Genet 41 498 503 1:CAS:528: DC%2BD1MXisVOrurw%3D 10.1038/ng.319 19252489
23. B Lehner 2008 Selection to minimise noise in living systems and its implications for the evolution of gene expression Mol Syst Biol 4 170 10.1038/msb.2008.11 18319722 (Pubitemid 351654059)
24. Lehner B (2010) Conflict between noise and plasticity in yeast. PLoS Genet 6:e1001185
25. SC Stearns M Kaiser TJ Kawecki 1995 The differential genetic and environmental canalization of fitness components in Drosophila melanogaster J Evol Biol 8 539 557 10.1046/j.1420-9101.1995.8050539.x (Pubitemid 26453564)
26. JM Rendel BL Sheldon 1960 Selection for canalization of the scute phenotype in Drosophila Aust J Biol Sci 13 36 47
27. B Houchmandzadeh E Wieschaus S Leibler 2002 Establishment of developmental precision and proportions in the early Drosophila embryo Nature 415 798 802 1:CAS:528:DC%2BD38XhsFektb0%3D 11845210 (Pubitemid 34150502)
28. C Queitsch TA Sangster S Lindquist 2002 Hsp90 as a capacitor of phenotypic variation Nature 417 618 624 1:CAS:528:DC%2BD38Xkt1ektrk%3D 10.1038/nature749 12050657 (Pubitemid 34614814)
29. B Lehner C Crombie J Tischler A Fortunato AG Fraser 2006 Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways Nat Genet 38 896 903 1:CAS:528:DC%2BD28XnsVCgsr0%3D 10.1038/ng1844 16845399 (Pubitemid 44141657)
30. B Lehner 2010 Genes confer similar robustness to environmental, stochastic, and genetic perturbations in yeast PLoS One 5 e9035 10.1371/journal.pone.0009035 20140261
31. SF Levy ML Siegal 2008 Network hubs buffer environmental variation in Saccharomyces cerevisiae PLoS Biol 6 e264 10.1371/journal.pbio.0060264 18986213
32. K Kaneko C Furusawa 2006 An evolutionary relationship between genetic variation and phenotypic fluctuation J Theor Biol 240 78 86 10.1016/j.jtbi.2005. 08.029 16212981