Whole-genome amplification-based GenomiPhi for multiple genomic analysis of individual early porcine embryos

Theriogenology

Volumn 75, Issue 8, 2011, Pages 1543-1549

  Akasaka, Eri ^a   Ozawa, Akio ^a   Mori, Hironori ^a   Mizobe, Yamato ^a   Yoshida, Mitsutoshi ^a   Miyoshi, Kazuchika ^a   Sato, Masahiro ^a  

^a KAGOSHIMA UNIVERSITY   (Japan)

Author keywords

DNA amplification; GenomiPhi; Multiple displacement amplification (MDA); Phi29 DNA polymerase; Porcine embryo

Indexed keywords

DNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; BLASTOCYST; GENE EXPRESSION REGULATION; GENETICS; GENOME; GENOMICS; METABOLISM; METHODOLOGY; NUCLEIC ACID AMPLIFICATION; PRENATAL DEVELOPMENT; SWINE;

ANIMALS; BLASTOCYST; DNA; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENOME; GENOMICS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; SWINE;

BACILLUS PHAGE PHI29; SUS;

EID: 79953293024     PISSN: 0093691X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.theriogenology.2010.12.018     Document Type: Article

References (29)

1. Zhang L., Cui L.X., Schmitt K., Hubert R., Navidi W., Arnheim N. Whole genome amplification from a single cell: implications for genetic analysis. Proc Natl Acad Sci USA 1992, 89:5847-5851.
2. Telenius H., Carter N.P., Bebb C.E., Nordenskjold M., Ponder B.A., Tunnacliffe A. Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 1992, 13:718-725.
3. Snabes M.C., Chong S.S., Subramanian S.B., Kristjansson K., DiSepio D., Hughes M.R. Preimplantation single-cell analysis of multiple genetic loci by whole-genome amplification. Proc Natl Acad Sci USA 1994, 91:6181-6185.
4. Cheung V.G., Nelson S.F. Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA. Proc Natl Acad Sci USA 1996, 93:14676-14679.
5. Cui X., Li H., Goradia T.M., Lange K., Kazazian H.H., Galas D.J., Arnheim N. Single-sperm typing: determination of genetic distance between the G gamma-globin and parathyroid hormone loci by using the polymerase chain reaction and allele-specific oligomers. Proc Natl Acad Sci USA 1989, 86:9389-9393.
6. Arnheim N., Li H., Cui X. PCR analysis of DNA sequences in single cells: single sperm gene mapping and genetic disease diagnosis. Genomics 1990, 8:415-419.
7. Cui X., Gerwin J., Navidi W., Li H., Kuehn M., Arnheim N. Gene-centromere linkage mapping by PCR analysis of individual oocytes. Genomics 1992, 13:713-717.
8. Dean F.B., Hosono S., Fang L., Wu X., Faruqi A.F., Bray-Ward P., Sun Z., Zong Q., Du Y., Du J., Driscoll M., Song W., Kingsmore S.F., Egholm M., Lasken R.S. Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci USA 2002, 99:5261-5266.
9. Lasken R.S., Egholm M. Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens. Trends Biotechnol 2003, 21:531-535.
10. Handyside A.H., Robinson M.D., Simpson R.J., Omar M.B., Shaw M.-A., Grudzinskas J.G., Rutherford A. Isothermal whole genome amplification from single and small numbers of cells: a new era for preimplantation genetic diagnosis of inherited disease. Mol Hum Reprod 2004, 10:767-772.
11. Hellani A., Coskun S., Benkhalifa M., Tbakhi A., Sakati N., Al-Odaib A., Ozand P. Multiple displacement amplification on single cell and possible PGD applications. Mol Hum Reprod 2004, 10:847-852.
12. Hellani A., Coskun S., Tbakhi A., Al-Hassan S. Clinical application of multiple displacement amplification in preimplantation genetic diagnosis. Reprod Biomed Online 2005, 10:376-380.
13. Jiang Z., Zhang X., Deka R., Jin L. Genome amplification of single sperm using multiple displacement amplification. Nucleic Acids Res 2005, 33:e91.
14. Panelli S., Damiani G., Espen L., Micheli G., Sgaramella V. Towards the analysis of the genomes of single cells: Further characterization of the multiple displacement amplification. Gene 2006, 372:1-10.
15. Le Caignec C., Spits C., Sermon K., De Rycke M., Thienpont B., Debrock S., Staessen C., Moreau Y., Fryns J.-P., Van Steirteghem A., Liebaers I., Vermeesch J.R. Single-cell chromosomal imbalances detection by array CGH. Nucleic Acids Res 2006, 34:e68.
16. Spits C., Le Caignec C., De Rycke M., Van Haute L., Van Steirteghem A., Liebaers I., Sermon K. Whole-genome multiple displacement amplification from single cells. Nature Protocols 2006, 1:1965-1970.
17. Spits C., Le Caignec C., De Rycke M., Van Haute L., Van Steirteghem A., Liebaers I., Sermon K. Optimization and evaluation of single-cell whole-genome multiple displacement amplification. Hum Mut 2006, 27:496-503.
18. Zhang K., Martiny A.C., Reppas N.B., Barry K.W., Malek J., Chisholm S.W., Church G.M. Sequencing genomes from single cells by polymerase cloning. Nat Biotech 2006, 24:680-686.
19. Pan X., Urban A.E., Palejev D., Schulz V., Grubert F., Hu Y., Snyder M., Weissman S.M. A procedure for highly specific, sensitive, and unbiased whole-genome amplification. Proc Natl Acad Sci USA 2008, 105:15499-15504.
20. R) genes in porcine embryos following nuclear transfer with porcine fetal fibroblasts transfected by retrovirus vector. Mol Reprod Dev 2000, 57:331-337.
21. Müller U. Ten years of gene targeting: targeted mouse mutants, from vector design to phenotype analysis. Mech Dev 1999, 82:3-21.
22. Miyoshi K., Mori H., Mizobe Y., Akasaka E., Ozawa A., Yoshida M., Sato M. Development of a noninvasive monitoring system for evaluation of Oct-3/4 promoter status in miniature pig somatic cell nuclear transfer embryos. J Reprod Dev 2009, 55:661-669.
23. 2+. J Reprod Dev 2008, 54:42-45. a.
24. Miyoshi K., Mori H., Yamamoto H., Kishimoto M., Yoshida M. Effects of demecolcine and sucrose on the incidence of cytoplasmic protrusions containing chromosomes in pig oocytes matured in vitro. J Reprod Dev 2008, 54:117-121. b.
25. Sato K., Yoshida M., Miyoshi K. Utility of ultrasound stimulation for activation of pig oocytes matured in vitro. Mol Reprod Dev 2005, 72:396-403.
26. Li H., Cui X., Arnheim N. Analysis of DNA sequence variation in single cells. Methods 1991, 2:49-59.
27. . Cloning Stem Cells 2007, 9:523-534.
28. Lage J.M., Leamon J.H., Pejovic T., Hamann S., Lacey M., Dillon D., Segraves R., Vossbrinck B., Gonzalez A., Pinkel D., Albertson D.G., Costa J., Lizardi P.M. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Res 2003, 13:294-307.
29. Holbrook J.F., Stabley D., Sol-Church K. Exploring whole genome amplification as a DNA recovery tool for molecular genetic studies. J Biomol Tech 2005, 16:125-133.