Persistence of free-living protozoan communities across rearing cycles in commercial poultry houses

Applied and Environmental Microbiology

Volumn 77, Issue 5, 2011, Pages 1763-1769

  Baré, Julie ^a   Houf, Kurt ^a   Verstraete, Tine ^a   Vaerewijck, Mario ^a   Sabbe, Koen ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PATHOGENS; BIO-SECURITY; COMMUNITY STRUCTURES; CROSS CONTAMINATION; DENATURING GRADIENT GEL ELECTROPHORESIS; MANAGEMENT STRATEGIES; MOLECULAR FINGERPRINTING; MULTI VARIATE ANALYSIS; NATURAL ENVIRONMENTS; POULTRY HOUSE; TEMPORAL DYNAMICS;

BACTERIOLOGY; DISINFECTION; ECOSYSTEMS; ELECTROPHORESIS; HOUSES; MULTIVARIANT ANALYSIS;

PROTOZOA;

PROTOZOAL DNA;

BACTERIAL DISEASE; BACTERIUM; BIOSAFETY; COMMUNITY STRUCTURE; MOLECULAR ANALYSIS; MULTIVARIATE ANALYSIS; PERSISTENCE; POULTRY; PROTOZOAN; REARING; SPATIOTEMPORAL ANALYSIS; SURVIVAL;

ALVEOLATA; ANIMAL; ANIMAL HOUSING; ARTICLE; DNA DENATURATION; DNA FINGERPRINTING; GENETICS; ISOLATION AND PURIFICATION; MICROBIAL VIABILITY; MICROBIOLOGY; PARASITOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; POULTRY; TIME;

ALVEOLATA; ANIMALS; DNA FINGERPRINTING; DNA, PROTOZOAN; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENVIRONMENTAL MICROBIOLOGY; HOUSING, ANIMAL; MICROBIAL VIABILITY; NUCLEIC ACID DENATURATION; POULTRY; TIME FACTORS;

BACTERIA (MICROORGANISMS); CILIOPHORA; MASTIGOPHORA (FLAGELLATES); PROTOZOA;

EID: 79953204643     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01756-10     Document Type: Article

References (44)

1. Adl, S. M., et al. 2005. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J. Eukaryot. Microbiol. 52:399-451.
2. Akya, A., A. Pointon, and C. Thomas. 2009. Viability of Listeria monocytogenes in co-culture with Acanthamoeba spp. FEMS Microbiol. Ecol. 70:20-29.
3. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
4. Andrushchyshyn, O. P., K. P. Wilson, and D. D. Williams. 2007. Ciliatecommunities in shallow groundwater: seasonal and spatial characteristics. Freshwater Biol. 52:1745-1761.
5. Axelsson-Olsson, D., J. Waldenström, T. Broman, B. Olsen, and M. Holmberg. 2005. Protozoan Acanthamoeba polyphaga as a potential reservoir for Campylobacter jejuni. Appl. Environ. Microbiol. 71:987-992.
6. Axelsson-Olsson, D., et al. 2010. Amoebae and algae can prolong the survival of Campylobacter species in co-culture. Exp. Parasitol. 126:59-64.
7. Baré, J., et al. 2009. Diversity and habitat specificity of free-living protozoa in commercial poultry houses. Appl. Environ. Microbiol. 75:1417-1426.
8. Baré, J., et al. 2010. Influence of temperature, oxygen and bacterial strain identity on the association of Campylobacter jejuni with Acanthamoeba castellanii. FEMS Microbiol. Ecol. 74:371-381.
9. Borcard, D., P. Legendre, and P. Rapeau. 1992. Partialling out the spatial component of ecological variation. Ecology 73:1045-1055.
10. Brandl, M. T., B. M. Rosenthal, A. F. Haxo, and S. G. Berk. 2005. Enhanced survival of Salmonella enterica in vesicles released by a soilborne Tetrahymena species. Appl. Environ. Microbiol. 71:1562-1569.
11. Cirillo, J. D., S. Falkow, L. S. Tompkins, and L. E. Bermudez. 1997. Interaction of Mycobacterium avium with environmental amoebae enhances virulence. Infect. Immun. 65:3759-3767.
12. Fenchel, T. 1987. Ecology of protozoa. The biology of free-living phagotrophic protists. Science Tech Publishers, Inc., Berlin, Germany.
13. Finlay, B. J., et al. 2000. Estimating the growth potential of the soil protozoan community. Protist 151:69-80.
14. Foissner, W., H. Blatterer, H. Berger, and F. Kohmann. 1991. Taxonomische und ökologische Revision der Ciliaten des Saprobiensystems. Band I: Cyrthophorida, Oligotrichida, Hypotrichida, Colpodea. Bayerisches Landesamt für Wasserwirtschaft, Munich, Germany.
15. Gaze, W. 2003. Interactions between Salmonella typhimurium and Acanthamoeba polyphaga, and observation of a new method of intracellular growth within food vacuoles. Microb. Ecol. 36:358-369.
16. Goldschmidt, P., et al. 2008. Resistance of Acanthamoeba to classic DNA extraction methods used for the diagnosis of corneal infections. Br. J. Ophthalmol. 92:112-115.
17. Hald, B., A. Wedderkopp, and M. Madsen. 2000. Thermophilic Campylobacter spp. in Danish broiler production: a cross-sectional survey and a retrospective analysis of risk factors for occurrence in broiler flocks. Avian Pathol. 29:123-131.
18. Heikkinen, R. K., M. Luoto, M. Kuussaari, and J. Poyry. 2005. New insights into butterfly-environment relationships using partitioning methods. Proc. R. Soc. B Biol. Sci. 272:2203-2210.
19. Howe, A. T., D. Bass, K. Vickerman, E. E. Chao, and T. Cavalier-Smith. 2009. Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa). Protist 160:159-189.
20. Huws, S. A., R. J. Morley, M. V. Jones, M. R. Brown, and A. W. Smith. 2008. Interactions of some common pathogenic bacteria with Acanthamoeba polyphaga. FEMS Microbiol. Lett. 282:258-265.
21. Jongman, R. H. G., C. J. F. ter Braak, and O. F. R. Van Tongeren. 1995. Data analysis in community and landscape ecology. Cambridge University Press, Cambridge, United Kingdom.
22. Jules, M., and C. Buchrieser. 2007. Legionella pneumophila adaptation to intracellular life and the host response: clues from genomics and transcriptomics. FEBS Lett. 581:2829-2838.
23. King, C. H., E. B. Shotts, Jr., R. E. Wooley, and K. G. Porter. 1988. Survival of coliforms and bacterial pathogens within protozoa during chlorination. Appl. Environ. Microbiol. 54:3023-3033.
24. Kiss, A. K., E. Acs, K. T. Kiss, and J. K. Torok. 2009. Structure and seasonal dynamics of the protozoan community (heterotrophic flagellates, ciliates, amoeboid protozoa) in the plankton of a large river (River Danube, Hungary). Eur. J. Protistol. 45:121-138.
25. Lamothe, J., S. Thyssen, and M. A. Valvano. 2004. Burkholderia cepacia complex isolates survive intracellularly without replication within acidic vacuoles of Acanthamoeba polyphaga. Cell. Microbiol. 6:1127-1138.
26. Newell, D. G., and C. Fearnley. 2003. Sources of Campylobacter colonization in broiler chickens. Appl. Environ. Microbiol. 69:4343-4351.
27. Page, F. C. 1988. A new key to freshwater and soil Gymnamoebae. Freshwater Biological Association, Ambleside, United Kingdom.
28. Rasschaert, G., K. Houf, J. Van Hende, and L. De Zutter. 2007. Investigation of the concurrent colonization with Campylobacter and Salmonella in poultry flocks and assessment of the sampling site for status determination at slaughter. Vet. Microbiol. 123:104-109.
29. Scheid, P. 2007. Mechanism of intrusion of a microspordian-like organism into the nucleus of host amoebae (Vannella sp.) isolated from a keratitis patient. Parasitol. Res. 101:1097-1102.
30. Snelling, W. J., J. P. McKenna, D. M. Lecky, and J. S. Dooley. 2005. Survival of Campylobacter jejuni in waterborne protozoa. Appl. Environ. Microbiol. 71:5560-5571. (Author's correction, 71:7631.)
31. Snelling, W. J., J. E. Moore, J. P. McKenna, D. M. Lecky, and J. S. Dooley. 2006. Bacterial-protozoa interactions; an update on the role these phenomena play towards human illness. Microbes Infect. 8:578-587.
32. ter Braak, C. J. F., and P. Smilauer. 1998. Canoco reference manual and user's guide to Canoco for Windows: software for canonical community ordination (version 4). Microcomputer Power, Ithaca, NY.
33. Tezcan-Merdol, D., et al. 2004. Uptake and replication of Salmonella enterica in Acanthamoeba rhysodes. Appl. Environ. Microbiol. 70:3706-3714.
34. Thomas, V., G. McDonnel, S. P. Denyer, and J.-Y. Maillard. 2010. Freeliving amoebae and their intracellular pathogenic microorganisms: risk for water quality. FEMS Microbiol. Rev. 34:231-259.
35. Valster, R. M., B. A. Wullings, G. Bakker, H. Smidt, and D. van der Kooij. 2009. Free-living protozoa in two unchlorinated drinking water supplies, identified by phylogenic analysis of 18S rRNA gene sequences. Appl. Environ. Microbiol. 75:4736-4746.
36. van Hannen, E. J., M. P. van Agterveld, H. J. Gons, and H. J. Laanbroek. 1998. Revealing genetic diversity of eukaryotic microorganisms in aquatic environments by denaturing gradient gel electrophoresis. J. Phycol. 34:206- 213.
37. Visvesvara, G. S., H. Moura, and F. L. Schuster. 2007. Pathogenic and opportunistic free-living amoebae: Acanthamoeba spp., Balamuthia mandrillaris, Naegleria fowleri, and Sappinia diploidea. FEMS Immunol. Med. Microbiol. 50:1-26.
38. von Wintzingerode, F., U. B. Göbel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
39. Vyverman, W., et al. 2007. Historical processes constrain patterns in global diatom diversity. Ecology 88:1924-1931.
40. Wildschutte, H., D. M. Wolfe, A. Tamewitz, and J. G. Lawrence. 2004. Protozoan predation, diversifying selection, and the evolution of antigenic diversity in Salmonella. Proc. Natl. Acad. Sci. U. S. A. 101:10644-10649.
41. Wildschutte, H., and J. G. Lawrence. 2007. Differential Salmonella survival against communities of intestinal amoebae. Microbiology 153:1781-1789.
42. Yubuki, N., T. Nakayama, and I. Inouye. 2008. A unique life cycle and perennation in a colorless chrysophyte Spumella sp. J. Phycol. 44:164-172.
43. Zwart, K. B., and J. F. Darbyshire. 1992. Growth and nitrogenous excretion of a common soil flagellate Spumella sp.-a laboratory experiment. J. Soil Sci. 43:145-157.
44. Zweifel, C., K. D. Scheu, M. Keel, F. Renggli, and R. Stephan. 2008. Occurrence and genotypes of Campylobacter in broiler flocks, other farm animals, and the environment during several rearing periods on selected poultry farms. Int. J. Food Microbiol. 125:182-187.