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Volumn 39, Issue 5, 2011, Pages

A simple method using PyrosequencingTM to identify de novo SNPs in pooled DNA samples

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; PYROPHOSPHATE;

EID: 79953201917     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq1249     Document Type: Article
Times cited : (7)

References (35)
  • 3
    • 2342640899 scopus 로고    scopus 로고
    • Determination of detection and quantification limits for SNP allele frequency estimation in DNA pools using real time PCR
    • Schwarz G. Baumler S. Block A. Felsenstein F.G. and Wenzel G. (2004) Determination of detection and quantification limits for SNP allele frequency estimation in DNA pools using real time PCR. Nucleic Acids Res. 32 e24.
    • (2004) Nucleic Acids Res. , vol.32
    • Schwarz, G.1    Baumler, S.2    Block, A.3    Felsenstein, F.G.4    Wenzel, G.5
  • 4
    • 0036844881 scopus 로고    scopus 로고
    • DNA pooling: A tool for large-scale association studies
    • DOI 10.1038/nrg930
    • Sham P. Bader J.S. Craig I. O'Donovan M. and Owen M. (2002) DNA Pooling: a tool for large-scale association studies. Nat. Rev. Genet. 3 862-871. (Pubitemid 35303518)
    • (2002) Nature Reviews Genetics , vol.3 , Issue.11 , pp. 862-871
    • Sham, P.1    Bader, J.S.2    Craig, I.3    O'Donovan, M.4    Owen, M.5
  • 5
    • 0032427048 scopus 로고    scopus 로고
    • The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human diseases. I. DNA pooling
    • Risch N. and Teng J. (1998) The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human diseases I. DNA pooling. Genome Res. 8 1273-1288. (Pubitemid 29039099)
    • (1998) Genome Research , vol.8 , Issue.12 , pp. 1273-1288
    • Risch, N.1    Teng, J.2
  • 6
    • 0032897131 scopus 로고    scopus 로고
    • The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human diseases. II. Individual genotyping
    • Teng J. and Risch N. (1999) The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human diseases. II. Individual genotyping. Genome Res. 9 234-241. (Pubitemid 29168186)
    • (1999) Genome Research , vol.9 , Issue.3 , pp. 234-241
    • Teng, J.1    Risch, N.2
  • 7
    • 19944398817 scopus 로고    scopus 로고
    • SNPs, microarrays and pooled DNA: Identification of four loci associated with mild mental impairment in a sample of 6000 children
    • DOI 10.1093/hmg/ddi142
    • Butcher L.M. Meaburn E. Knight J. Sham P.C. Schalkwyk L.C. Craig I.W. and Plomin R. (2005) SNPs microarrays and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children. Hum. Mol. Genet. 14 1315-1325. (Pubitemid 40753541)
    • (2005) Human Molecular Genetics , vol.14 , Issue.10 , pp. 1315-1325
    • Butcher, L.M.1    Meaburn, E.2    Knight, J.3    Sham, P.C.4    Schalkwyk, L.C.5    Craig, I.W.6    Plomin, R.7
  • 9
    • 0023715281 scopus 로고
    • A new method of sequencing DNA
    • Hyman E.D. (1988) A new method of sequencing DNA. Anal. Biochem. 174 423-436.
    • (1988) Anal. Biochem. , vol.174 , pp. 423-436
    • Hyman, E.D.1
  • 10
    • 28844463698 scopus 로고    scopus 로고
    • Emerging technologies in DNA sequencing
    • DOI 10.1101/gr.3770505
    • Metzker M.L. (2005) Emerging technologies in DNA sequencing. Genome Res. 15 1767-1776. (Pubitemid 41780407)
    • (2005) Genome Research , vol.15 , Issue.12 , pp. 1767-1776
    • Metzker, M.L.1
  • 11
    • 0030298490 scopus 로고    scopus 로고
    • Real-time DNA sequencing using detection of pyrophosphate release
    • DOI 10.1006/abio.1996.0432
    • Ronaghi M. Karamohamed S. Pettersson B. Uhlen M. and Nyren P. (1996) Real-time DNA sequencing using detection of pyrophosphate release. Anal. Biochem. 242 84-89. (Pubitemid 26378519)
    • (1996) Analytical Biochemistry , vol.242 , Issue.1 , pp. 84-89
    • Ronaghi, M.1    Karamohamed, S.2    Pettersson, B.3    Uhlen, M.4    Nyren, P.5
  • 12
    • 0032540905 scopus 로고    scopus 로고
    • A sequencing method based on real-time pyrophosphate
    • Ronaghi M. Uhlen M. and Nyren P. (1998) A sequencing method based on real-time pyrophosphate. Science 281 363 365.
    • (1998) Science , vol.281-363 , pp. 365
    • Ronaghi, M.1    Uhlen, M.2    Nyren, P.3
  • 13
    • 3042722019 scopus 로고    scopus 로고
    • Evolutionary changes in cis and trans gene regulation
    • DOI 10.1038/nature02698
    • Wittkopp P.J. Haerum B.K. and Clark A.G. (2004) Evolutionary changes in cis and trans gene regulation. Nature 430 85-88. (Pubitemid 38915229)
    • (2004) Nature , vol.430 , Issue.6995 , pp. 85-88
    • Wittkopp, P.J.1    Haerum, B.K.2    Clark, A.G.3
  • 16
    • 33847361115 scopus 로고    scopus 로고
    • Validation of Pyrosequencing™ for accurate and high throughput estimation of allele frequencies in malaria parasites
    • DOI 10.1016/j.molbiopara.2006.12.008, PII S0166685106003537
    • Cheesman S. Creasey A. Degnan K. Kooij T. Afonso A. Cravo P. Carter R. and Hunt P. (2007) Validation of Pyrosequencing for accurate and high throughput estimation of allele frequencies in malaria parasites. Mol. Biochem. Parasitol. 152 213-219. (Pubitemid 46335719)
    • (2007) Molecular and Biochemical Parasitology , vol.152 , Issue.2 , pp. 213-219
    • Cheesman, S.1    Creasey, A.2    Degnan, K.3    Kooij, T.4    Afonso, A.5    Cravo, P.6    Carter, R.7    Hunt, P.8
  • 17
  • 18
    • 0036244869 scopus 로고    scopus 로고
    • Assessing allele frequencies of single nucleotide polymorphisms in DNA pools by Pyrosequencing™ technology
    • Wasson J. Skolnick G. Love-Gregory L. and Permutt M.A. (2002) Assessing allele frequencies of single nucleotide polymorphisms in DNA pools by pyrosequencing technology. Biotechniques 32 1144-1152. (Pubitemid 34492393)
    • (2002) BioTechniques , vol.32 , Issue.5 , pp. 1144-1152
    • Wasson, J.1    Skolnick, G.2    Love-Gregory, L.3    Permutt, M.A.4
  • 19
    • 0036590014 scopus 로고    scopus 로고
    • Estimation of single nucleotide polymorphism allele frequency in DNA pools by using Pyrosequencing
    • DOI 10.1007/s00439-002-0722-6
    • Gruber J.D. Colligan P.B. and Wolford J.K. (2002) Estimation of single nucleotide polymorphism allele frequency in DNA pools by using Pyrosequencing. Hum. Genet. 110 395-401. (Pubitemid 36074985)
    • (2002) Human Genetics , vol.110 , Issue.5 , pp. 395-401
    • Gruber, J.D.1    Colligan, P.B.2    Wolford, J.K.3
  • 20
    • 0036195655 scopus 로고    scopus 로고
    • Large-scale genotyping of single nucleotide polymorphisms by Pyrosequencing™ and validation against the 5′nuclease (TaqMan®) assay
    • DOI 10.1002/humu.10062
    • Nordfors L. Jansson M. Sandberg G. Lavebratt C. Sengul S. Schalling M. and Arner P. (2002) Large-scale genotyping of single nucleotide polymorphisms by PyrosequencingTM and validation against the 5'nuclease (Taqman) assay. Hum. Mutat. 19 395-401. (Pubitemid 34252320)
    • (2002) Human Mutation , vol.19 , Issue.4 , pp. 395-401
    • Nordfors, L.1    Jansson, M.2    Sandberg, G.3    Lavebratt, C.4    Sengul, S.5    Schalling, M.6    Arner, P.7
  • 21
    • 33750285594 scopus 로고    scopus 로고
    • Quantification of mtDNA mixtures in forensic evidence material using pyrosequencing
    • DOI 10.1007/s00414-005-0072-8
    • Andreasson H. Nilsson M. Budowle B. Frisk S. and Allen M. (2006) Quantification of mtDNA mixtures in forensic evidence material using pyrosequencing. Int. J. Legal Med. 120 383-390. (Pubitemid 44630582)
    • (2006) International Journal of Legal Medicine , vol.120 , Issue.6 , pp. 383-390
    • Andreasson, H.1    Nilsson, M.2    Budowle, B.3    Frisk, S.4    Allen, M.5
  • 23
    • 0347988090 scopus 로고    scopus 로고
    • Pyrosequencing™-Based SNP Allele Frequency Estimation in DNA Pools
    • DOI 10.1002/humu.10292
    • Lavebratt C. Sengul S. Jansson M. and Schalling M. (2004) PyrosequencingTM-based SNP allele frequency estimation in DNA pools. Hum. Mutat. 23 92-97. (Pubitemid 38056106)
    • (2004) Human Mutation , vol.23 , Issue.1 , pp. 92-97
    • Lavebratt, C.1    Sengul, S.2    Jansson, M.3    Schalling, M.4
  • 24
    • 0036244765 scopus 로고    scopus 로고
    • Rapid SNP allele frequency determination in genomic DNA pools by Pyrosequencing™
    • Neve B. Froguel P. Corset L. Vaillant E. Vatin V. and Boutin P. (2002) Rapid SNP allele frequency determination in genomic DNA pools by pyrosequencing. Biotechniques 32 1138-1142. (Pubitemid 34492392)
    • (2002) BioTechniques , vol.32 , Issue.5 , pp. 1138-1142
    • Neve, B.1    Froguel, P.2    Corset, L.3    Vaillant, E.4    Vatin, V.5    Boutin, P.6
  • 25
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis E.R. (2008) The impact of next-generation sequencing technology on genetics. Trends Genet. 24 133-141.
    • (2008) Trends Genet. , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 27
    • 17044388155 scopus 로고    scopus 로고
    • Genetic variation analyses by Pyrosequencing
    • Langaee T. and Ronaghi M. (2005) Genetic variation analyses by Pyrosequencing. Mutat. Res. 573 96-102.
    • (2005) Mutat. Res. , vol.573 , pp. 96-102
    • Langaee, T.1    Ronaghi, M.2
  • 29
    • 7044274538 scopus 로고    scopus 로고
    • Multiplex assays with fluorescent microbead readout: A powerful tool for mutation detection
    • DOI 10.1373/clinchem.2004.039784
    • Ugozzoli L.A. (2004) Multiplex assays with fluorescent microbead readout: a powerful tool for mutation detection. Clin. Chem. 50 1963-1965. (Pubitemid 39425827)
    • (2004) Clinical Chemistry , vol.50 , Issue.11 , pp. 1963-1965
    • Ugozzoli, L.A.1
  • 30
    • 26444474187 scopus 로고    scopus 로고
    • Multiplex SNP typing by bioluminometric assay coupled with terminator incorporation (BATI)
    • Zhou G.-H. Gotou M. Kajiyama T. and Kambara H. (2005) Multiplex SNP typing by bioluminometric assay coupled with terminator incorporation (BATI). Nucleic Acids Res. 33 e133.
    • (2005) Nucleic Acids Res. , vol.33
    • Zhou, G.-H.1    Gotou, M.2    Kajiyama, T.3    Kambara, H.4
  • 31
    • 0000898845 scopus 로고
    • An analysis of variance test for normality (complete samples)
    • Shapiro S.S. and Wilk M.B. (1965) An analysis of variance test for normality (complete samples). Biometrika 52 591-611.
    • (1965) Biometrika , vol.52 , pp. 591-611
    • Shapiro, S.S.1    Wilk, M.B.2
  • 32
    • 4444346815 scopus 로고    scopus 로고
    • De novo quantitative bisulfite sequencing using the pyrosequencing technology
    • DOI 10.1016/j.ab.2004.05.007, PII S0003269704004130
    • Dupont J.M. Tost J. Jammes H. and Gut I.G. (2004) De novo quantitative bisulfite sequencing using the pyrosequencing technology. Anal. Biochem. 333 119-127. (Pubitemid 39209229)
    • (2004) Analytical Biochemistry , vol.333 , Issue.1 , pp. 119-127
    • Dupont, J.-M.1    Tost, J.2    Jammes, H.3    Gut, I.G.4
  • 35
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - The next generation
    • Metzker M.L. (2010) Sequencing technologies - the next generation. Nat. Rev. Genet. 11 31-46.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 31-46
    • Metzker, M.L.1


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