메뉴 건너뛰기




Volumn 14, Issue 10, 2005, Pages 1315-1325

SNPs, microarrays and pooled DNA: Identification of four loci associated with mild mental impairment in a sample of 6000 children

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATING TRANSCRIPTION FACTOR 2; DNA; PROTEIN KLF7; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 19944398817     PISSN: 09646906     EISSN: None     Source Type: Journal    
DOI: 10.1093/hmg/ddi142     Document Type: Article
Times cited : (78)

References (58)
  • 1
    • 0004235298 scopus 로고
    • American Psychiatric Association American Psychiatric Association, Washington, DC
    • American Psychiatric Association (1994) Diagnostic and Statistical Manual of Mental Disorders. American Psychiatric Association, Washington, DC.
    • (1994) Diagnostic and Statistical Manual of Mental Disorders
  • 2
    • 0041829416 scopus 로고    scopus 로고
    • Learning disability
    • Gillberg, C. and Soderstrom, H. (2003) Learning disability. Lancet, 362, 811-821.
    • (2003) Lancet , vol.362 , pp. 811-821
    • Gillberg, C.1    Soderstrom, H.2
  • 3
    • 1642376040 scopus 로고    scopus 로고
    • Molecular and comparative genetics of mental retardation
    • Inlow, J.K. and Restifo, L.L. (2004) Molecular and comparative genetics of mental retardation. Genetics, 166, 835-881.
    • (2004) Genetics , vol.166 , pp. 835-881
    • Inlow, J.K.1    Restifo, L.L.2
  • 4
  • 6
    • 0021735601 scopus 로고
    • Familial mental retardation
    • Nichols, P.L. (1984) Familial mental retardation. Behav. Genet., 14, 161-170.
    • (1984) Behav. Genet. , vol.14 , pp. 161-170
    • Nichols, P.L.1
  • 8
    • 0037348314 scopus 로고    scopus 로고
    • Phenotypic 'g' early in life: On the etiology of general cognitive ability in a large population sample of twin children aged 2 to 4 years
    • Spinath, F.M., Ronald, A., Harlaar, N., Price, T.S. and Plomin, R. (2003) Phenotypic 'g' early in life: on the etiology of general cognitive ability in a large population sample of twin children aged 2 to 4 years. Intelligence, 31, 195-210.
    • (2003) Intelligence , vol.31 , pp. 195-210
    • Spinath, F.M.1    Ronald, A.2    Harlaar, N.3    Price, T.S.4    Plomin, R.5
  • 9
    • 0028340175 scopus 로고
    • The genetic basis of complex human behaviors
    • Plomin, R., Owen, M.J. and McGuffin, P. (1994) The genetic basis of complex human behaviors. Science, 264, 1733-1739.
    • (1994) Science , vol.264 , pp. 1733-1739
    • Plomin, R.1    Owen, M.J.2    McGuffin, P.3
  • 10
    • 16844367873 scopus 로고    scopus 로고
    • Association analysis of mild mental impairment using DNA pooling to screen 432 brain-expressed SNPs
    • Butcher, L.M., Meaburn, E., Dale, P.S., Sham, P., Schalkwyk, L., Craig, I.W. and Plomin, R. (2005) Association analysis of mild mental impairment using DNA pooling to screen 432 brain-expressed SNPs. Mol. Psychiatr., 10, 384-392.
    • (2005) Mol. Psychiatr. , vol.10 , pp. 384-392
    • Butcher, L.M.1    Meaburn, E.2    Dale, P.S.3    Sham, P.4    Schalkwyk, L.5    Craig, I.W.6    Plomin, R.7
  • 11
    • 4344568105 scopus 로고    scopus 로고
    • Plomin, R., DeFries, J.C., Craig, I.W. and McGuffin, P. (eds), American Psychological Association, Washington, DC
    • Plomin, R., DeFries, J.C., Craig, I.W. and McGuffin, P. (2003) In Plomin, R., DeFries, J.C., Craig, I.W. and McGuffin, P. (eds), Behavioral Genetics in the Postgenomic Era. American Psychological Association, Washington, DC, pp. 3-15.
    • (2003) Behavioral Genetics in the Postgenomic Era , pp. 3-15
    • Plomin, R.1    DeFries, J.C.2    Craig, I.W.3    McGuffin, P.4
  • 12
    • 0035257236 scopus 로고    scopus 로고
    • Association study designs for complex diseases
    • Cardon, L.R. and Bell, J. (2001) Association study designs for complex diseases. Nat. Genet., 2, 91-99.
    • (2001) Nat. Genet. , vol.2 , pp. 91-99
    • Cardon, L.R.1    Bell, J.2
  • 15
    • 0033039497 scopus 로고    scopus 로고
    • Prospects for whole-genome linkage disequilibrium mapping of common disease genes
    • Kruglyak, L. (1999) Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat. Genet., 22, 139-144.
    • (1999) Nat. Genet. , vol.22 , pp. 139-144
    • Kruglyak, L.1
  • 18
    • 0031981997 scopus 로고    scopus 로고
    • A simple method for analyzing microsatellite allele image patterns generated from DNA pools and its application to allelic association studies
    • Daniels, J., Holmans, P., Plomin, R., McGuffin, P. and Owen, M.J. (1998) A simple method for analyzing microsatellite allele image patterns generated from DNA pools and its application to allelic association studies. Am. J. Hum. Genet., 62, 1189-1197.
    • (1998) Am. J. Hum. Genet. , vol.62 , pp. 1189-1197
    • Daniels, J.1    Holmans, P.2    Plomin, R.3    McGuffin, P.4    Owen, M.J.5
  • 19
    • 0027485238 scopus 로고
    • Determination of allele frequencies at loci with length polymorphism by quantitative analysis of DNA amplified from pooled samples
    • Pacek, P., Sajantila, A. and Syvanen, A.C. (1993) Determination of allele frequencies at loci with length polymorphism by quantitative analysis of DNA amplified from pooled samples. PCR Meth. Appl., 2, 313-317.
    • (1993) PCR Meth. Appl. , vol.2 , pp. 313-317
    • Pacek, P.1    Sajantila, A.2    Syvanen, A.C.3
  • 20
    • 18244402218 scopus 로고    scopus 로고
    • A genome-wide scan of 1842 DNA markers for allelic associations with general cognitive ability: A five-stage design using DNA pooling and extreme selected groups
    • Plomin, R., Hill, L., Craig, I., McGuffin, P., Purcell, S., Sham, P., Lubinski, D., Thompson, L., Fisher, P.J., Turic, D. et al. (2001) A genome-wide scan of 1842 DNA markers for allelic associations with general cognitive ability: a five-stage design using DNA pooling and extreme selected groups. Behav. Genet., 31, 497-509.
    • (2001) Behav. Genet. , vol.31 , pp. 497-509
    • Plomin, R.1    Hill, L.2    Craig, I.3    McGuffin, P.4    Purcell, S.5    Sham, P.6    Lubinski, D.7    Thompson, L.8    Fisher, P.J.9    Turic, D.10
  • 21
    • 0034090681 scopus 로고    scopus 로고
    • High-throughput SNP allele-frequency determination in pooled DNA samples by kinetic PCR
    • Germer, S., Higuchi, R. and Higuchi, R. (2000) High-throughput SNP allele-frequency determination in pooled DNA samples by kinetic PCR. Genome Res., 10, 258-266.
    • (2000) Genome Res. , vol.10 , pp. 258-266
    • Germer, S.1    Higuchi, R.2    Higuchi, R.3
  • 23
    • 0034454582 scopus 로고    scopus 로고
    • Automated genotyping of single nucleotide polymorphisms by extension of fluorescently labelled primers: Analysis of individual and pooled DNA samples
    • Kirov, G., Stephens, M., Williams, N., Turic, D., McGuffin, P., Plomin, R. and Owen, M.J. (2000) Automated genotyping of single nucleotide polymorphisms by extension of fluorescently labelled primers: analysis of individual and pooled DNA samples. Balk. J. Med. Genet., 3, 23-28.
    • (2000) Balk. J. Med. Genet. , vol.3 , pp. 23-28
    • Kirov, G.1    Stephens, M.2    Williams, N.3    Turic, D.4    McGuffin, P.5    Plomin, R.6    Owen, M.J.7
  • 25
    • 1842864721 scopus 로고    scopus 로고
    • Quantitative analysis of SNPs in pooled DNA samples by solid-phase minisequencing
    • Olsson, C., Liljedahl, U. and Syvanen, A.C. (2003) Quantitative analysis of SNPs in pooled DNA samples by solid-phase minisequencing. Meth. Mol. Biol., 212, 167-176.
    • (2003) Meth. Mol. Biol. , vol.212 , pp. 167-176
    • Olsson, C.1    Liljedahl, U.2    Syvanen, A.C.3
  • 26
    • 0033818174 scopus 로고    scopus 로고
    • Quantitative approach to single-nucleotide polymorphism analysis using MALDI-TOF mass spectrometry
    • Ross, P., Hall, L. and Haff, L.A. (2000) Quantitative approach to single-nucleotide polymorphism analysis using MALDI-TOF mass spectrometry. Biotechniques, 29, 620-6-628-9.
    • (2000) Biotechniques , vol.29
    • Ross, P.1    Hall, L.2    Haff, L.A.3
  • 27
    • 0035158426 scopus 로고    scopus 로고
    • Precise estimation of allele frequencies of single-nucleotide polymorphisms by a quantitative SSCP analysis of pooled DNA
    • Sasaki, T., Tahira, T., Suzuki, A., Higasa, K., Kukita, Y., Baba, S. and Hayashi, K. (2001) Precise estimation of allele frequencies of single-nucleotide polymorphisms by a quantitative SSCP analysis of pooled DNA. Am. J. Hum. Genet., 68, 214-218.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 214-218
    • Sasaki, T.1    Tahira, T.2    Suzuki, A.3    Higasa, K.4    Kukita, Y.5    Baba, S.6    Hayashi, K.7
  • 28
    • 12144286180 scopus 로고    scopus 로고
    • Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array
    • Matsuzaki, H., Loi, H., Dong, S., Tsai, Y.Y., Fang, J., Law, J., Di, X., Liu, W.M., Yang, G., Liu, G. et al. (2004) Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array. Genome Res., 14, 414-425.
    • (2004) Genome Res. , vol.14 , pp. 414-425
    • Matsuzaki, H.1    Loi, H.2    Dong, S.3    Tsai, Y.Y.4    Fang, J.5    Law, J.6    Di, X.7    Liu, W.M.8    Yang, G.9    Liu, G.10
  • 29
    • 4444270196 scopus 로고    scopus 로고
    • Genotyping pooled DNA on microarrays: A systematic genome screen of thousands of SNPs in large samples to detect QTLs for complex traits
    • Butcher, L.M., Meaburn, E., Liu, L., Hill, L., Al-Chalabi, A., Plomin, R., Schalkwyk, L. and Craig, I.W. (2004) Genotyping pooled DNA on microarrays: a systematic genome screen of thousands of SNPs in large samples to detect QTLs for complex traits. Behav. Genet., 34, 549-555.
    • (2004) Behav. Genet. , vol.34 , pp. 549-555
    • Butcher, L.M.1    Meaburn, E.2    Liu, L.3    Hill, L.4    Al-Chalabi, A.5    Plomin, R.6    Schalkwyk, L.7    Craig, I.W.8
  • 31
    • 0036807407 scopus 로고    scopus 로고
    • Twins Early Development Study (TEDS): A multivariate, longitudinal genetic investigation of language, cognition and behaviour problems in childhood
    • Trouton, A., Spinath, F.M. and Plomin, R. (2002) Twins Early Development Study (TEDS): A multivariate, longitudinal genetic investigation of language, cognition and behaviour problems in childhood. Twin Res., 5, 444-448.
    • (2002) Twin Res. , vol.5 , pp. 444-448
    • Trouton, A.1    Spinath, F.M.2    Plomin, R.3
  • 34
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B., 57, 289-300.
    • (1995) J. R. Stat. Soc. B. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 35
    • 0033909546 scopus 로고    scopus 로고
    • A general test of association for quantitative traits in nuclear families
    • Abecasis, G.R., Cardon, L.R. and Cookson, W.O. (2000) A general test of association for quantitative traits in nuclear families. Am. J. Hum. Genet., 66, 279-292.
    • (2000) Am. J. Hum. Genet. , vol.66 , pp. 279-292
    • Abecasis, G.R.1    Cardon, L.R.2    Cookson, W.O.3
  • 36
    • 0033366671 scopus 로고    scopus 로고
    • Combined linkage and association sib-pair analysis for quantitative traits
    • Fulker, D.W., Cherny, S.S., Sham, P.C. and Hewitt, J.K. (1999) Combined linkage and association sib-pair analysis for quantitative traits. Am. J. Hum. Genet., 64, 259-267.
    • (1999) Am. J. Hum. Genet. , vol.64 , pp. 259-267
    • Fulker, D.W.1    Cherny, S.S.2    Sham, P.C.3    Hewitt, J.K.4
  • 37
    • 0033927466 scopus 로고    scopus 로고
    • Power of linkage versus association analysis of quantitative traits, by use of variance-components models, for sibship data
    • Sham, P.C., Cherny, S.S., Purcell, S. and Hewitt, J. (2000) Power of linkage versus association analysis of quantitative traits, by use of variance-components models, for sibship data. Am. J. Hum. Genet., 66, 1616-1630.
    • (2000) Am. J. Hum. Genet. , vol.66 , pp. 1616-1630
    • Sham, P.C.1    Cherny, S.S.2    Purcell, S.3    Hewitt, J.4
  • 39
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett, J.C., Fry, B., Maller, J. and Daly, M.J. (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics, 21, 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 40
    • 0034284481 scopus 로고    scopus 로고
    • Conserved noncoding sequences are reliable guides to regulatory elements
    • Hardison, R.C. (2000) Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet., 16, 369-372.
    • (2000) Trends Genet. , vol.16 , pp. 369-372
    • Hardison, R.C.1
  • 41
    • 0034648786 scopus 로고    scopus 로고
    • Perspectives for vascular genomics
    • Rubin, E.M. and Tall, A. (2000) Perspectives for vascular genomics. Nature, 407, 265-269.
    • (2000) Nature , vol.407 , pp. 265-269
    • Rubin, E.M.1    Tall, A.2
  • 42
    • 0141537118 scopus 로고    scopus 로고
    • Identification of the Drosophila progenitor of mammalian Kruppel-like factors 6 and 7 and a determinant of fly development
    • De Graeve, F., Smaldone, S., Laub, F., Mlodzik, M., Bhat, M. and Ramirez, F. (2003) Identification of the Drosophila progenitor of mammalian Kruppel-like factors 6 and 7 and a determinant of fly development. Gene, 314, 55-62.
    • (2003) Gene , vol.314 , pp. 55-62
    • De Graeve, F.1    Smaldone, S.2    Laub, F.3    Mlodzik, M.4    Bhat, M.5    Ramirez, F.6
  • 43
    • 0032538271 scopus 로고    scopus 로고
    • CREB1 encodes a nuclear activator, a repressor, and a cytoplasmic modulator that form a regulatory unit critical for long-term facilitation
    • Bartsch, D., Casadio, A., Karl, K.A., Serodio, P. and Kandel, E.R. (1998) CREB1 encodes a nuclear activator, a repressor, and a cytoplasmic modulator that form a regulatory unit critical for long-term facilitation. Cell, 95, 211-223.
    • (1998) Cell , vol.95 , pp. 211-223
    • Bartsch, D.1    Casadio, A.2    Karl, K.A.3    Serodio, P.4    Kandel, E.R.5
  • 45
    • 1842584883 scopus 로고    scopus 로고
    • RNA regulation: A new genetics?
    • Mattick, J.S. (2004) RNA regulation: a new genetics? Nat. Rev. Genet., 5, 316-323.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 316-323
    • Mattick, J.S.1
  • 47
    • 0036844238 scopus 로고    scopus 로고
    • Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation
    • Wang, N., Akey, J.M., Zhang, K., Chakraborty, R. and Jin, L. (2002) Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. Am. J. Hum. Genet., 71, 1227-1234.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 1227-1234
    • Wang, N.1    Akey, J.M.2    Zhang, K.3    Chakraborty, R.4    Jin, L.5
  • 49
    • 0013231550 scopus 로고    scopus 로고
    • Plomin, R., DeFries, J.C., Craig, I.W. and McGuffin, P. (eds), American Psychological Association, Washington, DC
    • Craig, I.W. and McClay, J. (2003) In Plomin, R., DeFries, J.C., Craig, I.W. and McGuffin, P. (eds), Behavioral Genetics in the Postgenomic Era. American Psychological Association, Washington, DC, pp. 19-40.
    • (2003) Behavioral Genetics in the Postgenomic Era , pp. 19-40
    • Craig, I.W.1    McClay, J.2
  • 50
    • 33644670379 scopus 로고    scopus 로고
    • A behavioural genomic analysis of DNA markers associated with general cognitive ability in 7-year-olds
    • in press
    • Harlaar, N., Butcher, L.M., Meaburn, E., Craig, I.W. and Plomin, R. (2005) A behavioural genomic analysis of DNA markers associated with general cognitive ability in 7-year-olds. J. Child Psychol. Psychiat., in press.
    • (2005) J. Child Psychol. Psychiat.
    • Harlaar, N.1    Butcher, L.M.2    Meaburn, E.3    Craig, I.W.4    Plomin, R.5
  • 53
    • 0036259708 scopus 로고    scopus 로고
    • Testing cognitive abilities by telephone in a sample of 6-to 8-year olds
    • Petrill, S.A., Rempell, J., Oliver, B. and Plomin, R. (2002) Testing cognitive abilities by telephone in a sample of 6-to 8-year olds. Intelligence, 30, 353-360.
    • (2002) Intelligence , vol.30 , pp. 353-360
    • Petrill, S.A.1    Rempell, J.2    Oliver, B.3    Plomin, R.4
  • 56
    • 0037270487 scopus 로고    scopus 로고
    • DNA from buccal swabs recruited by mail: Evaluation of storage effects on long-term stability and suitability for multiplex polymerase chain reaction genotyping
    • Freeman, B., Smith, N., Curtis, C., Huckett, L., Mill, J. and Craig, I. (2003) DNA from buccal swabs recruited by mail: evaluation of storage effects on long-term stability and suitability for multiplex polymerase chain reaction genotyping. Behav. Genet., 33, 67-72.
    • (2003) Behav. Genet. , vol.33 , pp. 67-72
    • Freeman, B.1    Smith, N.2    Curtis, C.3    Huckett, L.4    Mill, J.5    Craig, I.6
  • 57
    • 0036338150 scopus 로고    scopus 로고
    • Merlin-rapid analysis of dense genetic maps using sparse gene flow trees
    • Abecasis, G.R., Cherny, S.S., Cookson, W.O. and Cardon, L. (2002) Merlin-rapid analysis of dense genetic maps using sparse gene flow trees. Nat. Genet., 30, 97-101.
    • (2002) Nat. Genet. , vol.30 , pp. 97-101
    • Abecasis, G.R.1    Cherny, S.S.2    Cookson, W.O.3    Cardon, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.