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Volumn 39, Issue 2, 2011, Pages 652-657

Identification of novel ligands for thiamine pyrophosphate (TPP) riboswitches

Author keywords

Chemical intervention; Fragment screening; Riboswitch; Structure activity relationship; Thiamine analogue; Thiamine pyrophosphate (TPP)

Indexed keywords

APTAMER; COCARBOXYLASE; LIGAND; MESSENGER RNA;

EID: 79953182739     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST0390652     Document Type: Review
Times cited : (19)

References (28)
  • 1
    • 0037206833 scopus 로고    scopus 로고
    • Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
    • DOI 10.1038/nature01145
    • Winkler, W.C., Nahvi, A. and Breaker, R.R. (2002) Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419, 952-956 (Pubitemid 35339632)
    • (2002) Nature , vol.419 , Issue.6910 , pp. 952-956
    • Winkler, W.1    Nahvi, A.2    Breaker, R.R.3
  • 2
    • 67650713931 scopus 로고    scopus 로고
    • The structural and functional diversity of metabolite-binding riboswitches
    • Roth, A. and Breaker, R.R. (2009) The structural and functional diversity of metabolite-binding riboswitches. Annu. Rev. Biochem. 78, 305-334
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 305-334
    • Roth, A.1    Breaker, R.R.2
  • 3
    • 46349083026 scopus 로고    scopus 로고
    • The distributions, mechanisms, and structures of metabolite-binding riboswitches
    • Barrick, J.E. and Breaker, R.R. (2007) The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol. 8, R239
    • (2007) Genome Biol. , vol.8
    • Barrick, J.E.1    Breaker, R.R.2
  • 4
    • 0346366823 scopus 로고    scopus 로고
    • Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5′-UTR
    • DOI 10.1016/S0014-5793(03)01335-8
    • Kubodera, T., Watanabe, M., Yoshiuchia, K., Yamashita, N., Nishimura, A., Nakaia, S., Gomib, K. and Hanamoto, H. (2003) Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5′-UTR. FEBS Lett. 555, 516-520 (Pubitemid 37532603)
    • (2003) FEBS Letters , vol.555 , Issue.3 , pp. 516-520
    • Kubodera, T.1    Watanabe, M.2    Yoshiuchi, K.3    Yamashita, N.4    Nishimura, A.5    Nakai, S.6    Gomi, K.7    Hanamoto, H.8
  • 5
    • 0038136962 scopus 로고    scopus 로고
    • Metabolite-binding RNA domains are present in the genes of eukaryotes
    • DOI 10.1261/rna.5090103
    • Sudarsan, N., Barrick, J.E. and Breaker, R.R. (2003) Metabolite-binding RNA domains are present in the genes of eukaryotes. RNA 9, 644-647 (Pubitemid 36618192)
    • (2003) RNA , vol.9 , Issue.6 , pp. 644-647
    • Sudarsan, N.1    Barrick, J.E.2    Breaker, R.R.3
  • 6
    • 34249278470 scopus 로고    scopus 로고
    • Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
    • DOI 10.1038/nature05769, PII NATURE05769
    • Cheah, M.T., Wachter, A., Sudarsan, N. and Breaker, R.R. (2007) Control of alternative RNA splicing and gene expression by eukaryotic riboswitches. Nature 447, 497-500 (Pubitemid 46816734)
    • (2007) Nature , vol.447 , Issue.7143 , pp. 497-500
    • Cheah, M.T.1    Wachter, A.2    Sudarsan, N.3    Breaker, R.R.4
  • 8
    • 0032500736 scopus 로고    scopus 로고
    • Controlling gene expression in living cells through small molecule-RNA interactions
    • DOI 10.1126/science.282.5387.296
    • Werstuck, G. and Green, M.R. (1998) Controlling gene expression in living cells through small molecule-RNA interactions. Science 282, 296-298 (Pubitemid 28487202)
    • (1998) Science , vol.282 , Issue.5387 , pp. 296-298
    • Werstuck, G.1    Green, M.R.2
  • 9
    • 0037388001 scopus 로고    scopus 로고
    • Conditional gene expression by controlling translation with tetracycline-binding aptamers
    • DOI 10.1093/nar/gkg285
    • Suess, B., Hanson, S., Berens, C., Fink, B., Schroeder, R. and Hillen, W. (2003) Conditional gene expression by controlling translation with tetracycline-binding aptamers. Nucleic Acids Res. 31, 1853-1858 (Pubitemid 36432692)
    • (2003) Nucleic Acids Research , vol.31 , Issue.7 , pp. 1853-1858
    • Suess, B.1    Hanson, S.2    Berens, C.3    Fink, B.4    Schroeder, R.5    Hillen, W.6
  • 10
    • 77950885839 scopus 로고    scopus 로고
    • Inducible gene expression from the plastid genome by a synthetic riboswitch
    • Verhounig, A., Karcher, D. and Bock, R. (2010) Inducible gene expression from the plastid genome by a synthetic riboswitch. Proc. Natl. Acad. Sci. U.S.A. 107, 6204-6209
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 6204-6209
    • Verhounig, A.1    Karcher, D.2    Bock, R.3
  • 11
    • 28844492215 scopus 로고    scopus 로고
    • Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine
    • Sudarsan, N., Cohen-Chalamish, S., Nakamura, S., Mitchell Emilsson, G. and Breaker, R.R. (2005) Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine. Chem. Biol. 12, 1325-1335
    • (2005) Chem. Biol. , vol.12 , pp. 1325-1335
    • Sudarsan, N.1    Cohen-Chalamish, S.2    Nakamura, S.3    Mitchell Emilsson, G.4    Breaker, R.R.5
  • 12
    • 33845700514 scopus 로고    scopus 로고
    • Riboswitches as antibacterial drug targets
    • Blount, K.F. and Breaker, R.R. (2006) Riboswitches as antibacterial drug targets. Nat. Biotechnol. 24, 1558-1564
    • (2006) Nat. Biotechnol. , vol.24 , pp. 1558-1564
    • Blount, K.F.1    Breaker, R.R.2
  • 13
    • 77951137401 scopus 로고    scopus 로고
    • A fragment-based approach to identifying ligands for riboswitches
    • Chen, L., Cressina, E., Leeper, F.J., Smith, A.G. and Abell, C. (2010) A fragment-based approach to identifying ligands for riboswitches. ACS Chem. Biol. 5, 355-358
    • (2010) ACS Chem. Biol. , vol.5 , pp. 355-358
    • Chen, L.1    Cressina, E.2    Leeper, F.J.3    Smith, A.G.4    Abell, C.5
  • 14
    • 79953174439 scopus 로고    scopus 로고
    • Fragment screening against the thiamine pyrophosphate riboswitch thiM
    • Cressina, E., Chen, L., Abell, C., Leeper, F.J. and Smith, A.G. (2011) Fragment screening against the thiamine pyrophosphate riboswitch thiM. Chem. Sci. 2, 157-165
    • (2011) Chem. Sci. , vol.2 , pp. 157-165
    • Cressina, E.1    Chen, L.2    Abell, C.3    Leeper, F.J.4    Smith, A.G.5
  • 15
    • 37549048176 scopus 로고    scopus 로고
    • Fragment-based approaches to enzyme inhibition
    • Ciulli, A. and Abell, C. (2007) Fragment-based approaches to enzyme inhibition. Curr. Opin. Biotechnol. 18, 489-496
    • (2007) Curr. Opin. Biotechnol. , vol.18 , pp. 489-496
    • Ciulli, A.1    Abell, C.2
  • 17
    • 49249128839 scopus 로고    scopus 로고
    • The corrin moiety of coenzyme B12 is the determinant for switching the btuB riboswitch of E. coli
    • Gallo, S., Oberhuber, M., Sigel, R.K.O. and Kräutler, B. (2008) The corrin moiety of coenzyme B12 is the determinant for switching the btuB riboswitch of E. coli. ChemBioChem. 9, 1408-1414
    • (2008) ChemBioChem. , vol.9 , pp. 1408-1414
    • Gallo, S.1    Oberhuber, M.2    Sigel, R.K.O.3    Kräutler, B.4
  • 18
    • 0842334528 scopus 로고    scopus 로고
    • Adenine riboswitches and gene activation by disruption of a transcription terminator
    • Mandal, M. and Breaker, R.R. (2004) Adenine riboswitches and gene activation by disruption of a transcription terminator. Nat. Struct. Mol. Biol. 11, 29-35
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 29-35
    • Mandal, M.1    Breaker, R.R.2
  • 19
    • 75649088957 scopus 로고    scopus 로고
    • Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch
    • Kulshina, N., Edwards, T.E. and Ferré-D'Amaré, A.R. (2010) Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch. RNA 16, 186-196
    • (2010) RNA , vol.16 , pp. 186-196
    • Kulshina, N.1    Edwards, T.E.2    Ferré-D'Amaré, A.R.3
  • 20
    • 33748300801 scopus 로고    scopus 로고
    • Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition
    • DOI 10.1016/j.str.2006.07.008, PII S0969212606003303
    • Edwards, T.E. and Ferré-D'Amaré, A.R. (2006) Crystal structures of the Thi-Box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition. Structure 14, 1459-1468 (Pubitemid 44331619)
    • (2006) Structure , vol.14 , Issue.9 , pp. 1459-1468
    • Edwards, T.E.1    Ferre-D'Amare, A.R.2
  • 21
    • 33745635350 scopus 로고    scopus 로고
    • Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
    • DOI 10.1038/nature04740, PII N04740
    • Serganov, S., Polonskaia, A., Phan, A., Breaker, R.R. and Patel, D.J. (2006) Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature 44, 1167-1171 (Pubitemid 43990739)
    • (2006) Nature , vol.441 , Issue.7097 , pp. 1167-1171
    • Serganov, A.1    Polonskaia, A.2    Phan, A.T.3    Breaker, R.R.4    Patel, D.J.5
  • 22
    • 33744469562 scopus 로고    scopus 로고
    • Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand
    • DOI 10.1126/science.1128451
    • Thore, S., Leibundgut, M. and Ban, N. (2006) Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand. Science 312, 1208-1211 (Pubitemid 43801145)
    • (2006) Science , vol.312 , Issue.5777 , pp. 1208-1211
    • Thore, S.1    Leibundgut, M.2    Ban, N.3
  • 23
    • 46049091176 scopus 로고    scopus 로고
    • Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch
    • Thore, S., Frick, C. and Ban, N. (2008) Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch. J. Am. Chem. Soc. 130, 8116-8117
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 8116-8117
    • Thore, S.1    Frick, C.2    Ban, N.3
  • 25
    • 44149111872 scopus 로고    scopus 로고
    • Riboswitch effectors as protein enzyme cofactors
    • DOI 10.1261/rna.908408
    • Cochrane, J.C. and Strobel, S.A. (2008) Riboswitch effectors as protein enzyme cofactors. RNA 14, 993-1002 (Pubitemid 351717480)
    • (2008) RNA , vol.14 , Issue.6 , pp. 993-1002
    • Cochrane, J.C.1    Strobel, S.A.2
  • 26
    • 1942453243 scopus 로고    scopus 로고
    • Ligand efficiency: A useful metric for lead selection
    • DOI 10.1016/S1359-6446(04)03069-7, PII S1359644604030697
    • Hopkins, A.L., Groom, C.R. and Alex, A. (2004) Ligand efficiency: a useful metric for lead selection. Drug Discovery Today 9, 430-431 (Pubitemid 38510559)
    • (2004) Drug Discovery Today , vol.9 , Issue.10 , pp. 430-431
    • Hopkins, A.L.1    Groom, C.R.2    Alex, A.3
  • 28
    • 3042826869 scopus 로고    scopus 로고
    • Inhibition of thiamin diphosphate dependent enzymes by 3-deazathiamin diphosphate
    • Mann, S., Perez Melero, C., Hawksley, D. and Leeper, F.J. (2004) Inhibition of thiamin diphosphate dependent enzymes by 3-deazathiamin diphosphate. Org. Biomol. Chem. 2, 1732-1741
    • (2004) Org. Biomol. Chem. , vol.2 , pp. 1732-1741
    • Mann, S.1    Perez Melero, C.2    Hawksley, D.3    Leeper, F.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.