Molecular diagnosis of respiratory enterovirus infections: Use of PCR and molecular identification for a best approach of the main circulating strains during 2008;Diagnostic molé culaire des infections respiratoires áenté rovirus :apport de la PCR et du génotypage pour une meilleure approche de la circulation des souches en Basse-Normandie au cours de l'anne 2008

Pathologie Biologie

Volumn 59, Issue 2, 2011, Pages 113-121

  Petitjean Lecherbonnier, J ^a   Dina, J ^a   Nguyen, E ^a   Gouarin, S ^a   Lebigot, E ^a   Vabret, A ^a  

^a CAEN UNIVERSITY HOSPITAL   (France)

Author keywords

Enterovirus; Molecular identification; PCR; Picornavirus; Respiratory infections; Rhinovirus

Indexed keywords

ARTICLE; ASEPTIC MENINGITIS; CEREBROSPINAL FLUID; CONTROLLED STUDY; ENTEROVIRUS INFECTION; FEMALE; GENOTYPE; HUMAN; LABORATORY DIAGNOSIS; MALE; MOLECULAR DIAGNOSIS; NEWBORN; NOSE SMEAR; POLYMERASE CHAIN REACTION; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY TRACT INFECTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEASONAL VARIATION; VIRUS CULTURE; VIRUS IDENTIFICATION; VIRUS ISOLATION;

COMPUTER SYSTEMS; ENTEROVIRUS; ENTEROVIRUS INFECTIONS; FRANCE; GENOTYPE; HUMANS; INFANT, NEWBORN; INPATIENTS; MENINGITIS, ASEPTIC; MOLECULAR DIAGNOSTIC TECHNIQUES; NASAL CAVITY; PICORNAVIRIDAE INFECTIONS; POLYMERASE CHAIN REACTION; PROSPECTIVE STUDIES; RESPIRATORY TRACT INFECTIONS; RHINOVIRUS; RNA, VIRAL; SEASONS;

EID: 79953176622     PISSN: 03698114     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.patbio.2010.07.010     Document Type: Article

References (41)

1. Rotbart H.A. Enteroviral infections of the central nervous system. Clin Infect Dis 1995, 20:971-981.
2. Peigue-Lafeuille H., Archimbaud C., De Champs C., Croquez N., Laurichesse H., Clavelou P., et al. Les méningites à entérovirus chez les adultes. Pathologie sous-estimée ? À propos de 30 observations de 1999 à 2000 et évolution des pratiques médicales en 2001. Pathol Biol 2002, 50:516-524.
3. Chang L.Y., Huang L.M., Gau S.S.F., Wu Y.Y., Hsia S.H., Fan T.Y., et al. Neurodevelopment and cognition in children after enterovirus 71 infection. N Engl J Med 2007, 356:1226-1234.
4. Huang Y.F., Chiu P.C., Chen C.C., Chen Y.Y., Hsieh K.S., Liu Y.C., et al. Cardiac troponin I: a reliable marker and early myocardial involvement with meningoencephalitis after fatal Enterovirus 71 infection. J Infect 2003, 46:238-243.
5. Freymuth F., Vabret A., Petitjean J., Gouarin S., Gueudin M., Campet M. Diagnostic des deux principales viroses respiratoires épidémiques la grippe et les infections à virus respiratoire syncytial. Place de la virologie moléculaire. Med Mal Infect 2000, 30:191-201.
6. Bellau-Pujol S., Vabret A., Legrand L., Dina J., Gouarin S., Petitjean-Lecherbonnier J., et al. Development of three multiplex RT-PCR assays for the detection of 12 respiratory RNA viruses. J Virol Methods 2005, 126:53-63.
7. Bailly J.L., Mirand A., Henquell C., Archimbaud C., Chambon M., Charbonné F., et al. Génotypage et épidémiologie moléculaire des entérovirus non poliomyélitiques. Virologie 2008, 12(1):53-65.
8. Laine P., Savolainen C., Blomqvist S., Hovi T. Phylogenetic analysis of human rhinovirus capsid protein VP1 and 2A protease coding sequences confirms shared genus-like relationships with enteroviruses. J Gen Virol 2005, 86:697-706.
9. Blomqvist S., Savolainen C., Raman L., Roivainen M., Hovi T. Human rhinovirus 87 and Enterovirus 68 represent a unique serotype with rhinovirus and enterovirus features. J Clin Microbiol 2002, 40:4218-4223.
10. Tapparel C., Junier T., Gerlach D., Van Belle S., Turin L., Cordey S.., et al. New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses. Emerg Infect Dis 2009, 15(5):719-720.
11. Stanway G., Brown P., Christian P., et al. Family Picornaviridae. Virus taxonomy, 8th report of the international committee on taxonomy of viruses 2005, Elsevier Academic Press, Amsterdam, The Netherlands, p. 757-78. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
12. Carstens E.B. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2009). Arch Virol 2010, 155:133-146.
13. Kairis B., Sauter P., Goffard A., Fronval S., Sane F., Hober D. Quand un entérovirus émerge. Pathol Biol 2009, 57:258-267.
14. Bailly J.L., Chambon M., Henquell C., Icart J., Peigue-Lafeuille H. Genomic variations in echovirus 30 persistent isolates recovered from a chronically infected immunodeficient child and comparison with the reference strain. J Clin Microbiol 2000, 38:552-557.
15. Brown B., Oberste M.S., Maher K., Pallansch M.A. Complete genomic sequencing shows that poliovirus and members of human enterovirus species C are closely related in the noncapsid coding region. J Virol 2003, 77:8973-8994.
16. Oberste M.S., Maher K., Pallansch M.A. Evidence for frequent recombination within species human enterovirus B based on complete genomic sequences of all thirty-seven serotypes. J Virol 2004, 78:855-867.
17. Vabret A., Mouthon F., Mourez T., Gouarin S., Petitjean J., Freymuth F. Direct diagnosis of human respiratory coronaviruses 229E and OC43 by the polymerase chain reaction. J Virol Methods 1997, 1-2:59-66.
18. Petitjean J., Vabret A., Dina J., Gouarin S., Freymuth F. Development and evaluation of a real-time RT-PCR assay on the LightCycler for the rapid detection of enterovirus in cerebrospinal fluid specimens. J Clin Virol 2006, 35:278-284.
19. Freymuth F., Vabret A., Rozenberg F., Dina J., Petitjean J., Gouarin S., et al. Replication of respiratory viruses, particularly influenza virus, rhinovirus, and coronavirus in HuH7 hepatocarcinoma cell line. J Med Virol 2005, 77:295-301.
20. Savolainen C., Mulders M.N., Hovi T. Phylogenetic analysis of rhinovirus isolates collected during successive epidemic seasons. Virus Res 2002, 85:41-46.
21. Olive D.M., Al-Mufti S., Al-Mulla W., Khan M.A., Pasca A., Stanway G., et al. Detection and differentiation of picornaviruses in clinical samples following genomic amplification. J Gen Virol 1990, 71:2141-2147.
22. Verstrepen W.A., Kuhn S., Kockx M.M., Van De Vyvere M.E., Mertens A.H. Rapid detection of enterovirus RNA in cerebrospinal fluid specimens with a novel single-tube real-time reverse transcription-PCR assay. J Clin Microbiol 2001, 39:4093-4096.
23. Nix W.A., Oberste M.S., Pallansch M.A. Sensitive, semi-nested PCR amplification of VP1 sequences for direct identification of all enteroviruses serotypes from original clinical specimens. J Clin Microbiol 2006, 44:2698-2704.
24. Altschul D.F., Gish W., Miller W., Meyers E.W., Lipman D.J. Basic local alignment search tool. J Med Biol 1990, 215-403.
25. Réseau de surveillance des entérovirus-bilan de l'activité au cours de l'année 2008. D. Antona, Institut de veille sanitaire, département des maladies infectieuses, St.-Maurice, France & B. Lina, Centre national de référence pour les entérovirus, centre de biologie-pôle est, Bron, France.
26. Romero J.R. Reverse-transcription polymerase chain reaction detection of the enteroviruses. Overview and clinical utility in pediatric enteroviral infections. Arch Pathol Lab Med 1999, 123:1161-1169.
27. Ramers C., Billman G., Hartin M., Ho S., Sawyer M.H. Impact of a diagnostic cerebrospinal fluid enterovirus polymerase chain reaction test on patient management. JAMA 2000, 283:2680-2685.
28. Melnick J.L. Enteroviruses: polioviruses, coxsakieviruses, echoviruses, and newer enteroviruses. Fields Virology 1996, 655-712. Lippincott-Raven Publishers, Philadelphia, Pa. 3rd ed. B.N. Fields, D.M. Knipe, P.M. Howley (Eds.).
29. Savolainen C., Blomqvist S., Mulders M.N., Hovi T. Genetic clustering of all 102 human rhinovirus prototype strains: serotype 87 is close to human enterovirus 70. J Gen Virol 2002, 83:333-340.
30. Bailly J.L., Chambon M., Peigue-Lafeuille H. Diversité et variabilité des entérovirus. Virologie 1999, 3:281-295.
31. Antona D., Levêque N., Chomel J.J., Dubrou S., Lévy-Bruhl D., Lina B. Surveillance of enteroviruses in France, 2000-2004. Eur J Clin Microbiol Infect Dis 2007, 26:403-412.
32. Oberste M.S., Maher K., Kilpatrick D.R., Flemister M.R., Brown B.A., Pallansch M.A. Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol 1999, 37:1288-1293.
33. Caro V., Guillot S., Delpeyroux F., Rainic R. Molecular strategy for 'serotyping' of human enteroviruses. J Gen Virol 2001, 82:79-91.
34. Norder H., Bjerregaard L., Magnius L., Lina B., Aymard M., Chomel J.J. Sequencing of 'untypable' enteroviruses reveals two new types. EV-77 and EV-78, within human enterovirus type B and substitutions in the BC loop of the VP1 protein for known types. J Gen Virol 2003, 84:827-836.
35. Mirand A., Archimbaud C., Henquell C., Michel Y., Chambon M., Peigue-Lafeuille H., et al. Prospective identification of HEV-B enteroviruses duting the 2005 outbreak. J Med Virol 2006, 78:1624-1634.
36. Mirand A., Bailly J.L., Henquell C., Peigue-Lafeuille H. Génotypage direct rapide des entérovirus dans le liquide céphalorachidien étude prospective de deux ans au sein d'un laboratoire de virologie clinique. Pathol Biol 2008, 56:471-481.
37. Mori I., Matsumoto K., Hatano M., Sudo M., Kimura Y. An unseasonable winter outbreak of echovirus type 30 meningitis. J Infect 1995, 31:219-223.
38. Chambon M., Archimbaud C., Bailly J.L., Henquell C., Regagnon C., Charbonné F., et al. Circulation of enteroviruses and persistence of meningitis cases in winter 1999-2000. J Med Virol 2001, 65:340-347.
39. Freymuth F., Quibriac M., Petitjean J., Daon F., Amiel M.L. Les virus responsables d'infection respiratoire en pédiatrie. Bilan de 3480 aspirations nasales réalisées chez l'enfant en une période de six ans. Ann Pediatr 1987, 34:493-501.
40. Reijans M., Dingemans G., Klaassen C.H., Meis J.F., Keijdener J., Mulders B., et al. RespiFinder: a new multiparameter test to differentially identify fifteen respiratory viruses. J Clin Microbiol 2008, 46:1232-1240.
41. Billaud G., Lina B. Rhinovirus principal agent des infections aériennes supérieures. Virologie 2004, 8:271-280.