-
1
-
-
33747403758
-
The emergence of Beijing family genotypes of Mycobacterium tuberculosis and low-level protection by bacille Calmette-Guerin (BCG) vaccines: is there a link?
-
Abebe F., Bjune G. The emergence of Beijing family genotypes of Mycobacterium tuberculosis and low-level protection by bacille Calmette-Guerin (BCG) vaccines: is there a link?. Clin. Exp. Immunol. 2006, 145:389-397.
-
(2006)
Clin. Exp. Immunol.
, vol.145
, pp. 389-397
-
-
Abebe, F.1
Bjune, G.2
-
2
-
-
33846195782
-
Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis
-
Alland D., Lacher D.W., Hazbon M.H., Motiwala A.S., Qi W., Fleischmann R.D., Whittam T.S. Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis. J. Clin. Microbiol. 2007, 45:39-46.
-
(2007)
J. Clin. Microbiol.
, vol.45
, pp. 39-46
-
-
Alland, D.1
Lacher, D.W.2
Hazbon, M.H.3
Motiwala, A.S.4
Qi, W.5
Fleischmann, R.D.6
Whittam, T.S.7
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0034082491
-
Mycobacterium tuberculosis Beijing genotype emerging in Vietnam
-
Anh D.D., Borgdorff M.W., Van L.N., Lan N.T., van Gorkom T., Kremer K., van Soolingen D. Mycobacterium tuberculosis Beijing genotype emerging in Vietnam. Emerg. Infect. Dis. 2000, 6:302-305.
-
(2000)
Emerg. Infect. Dis.
, vol.6
, pp. 302-305
-
-
Anh, D.D.1
Borgdorff, M.W.2
Van, L.N.3
Lan, N.T.4
van Gorkom, T.5
Kremer, K.6
van Soolingen, D.7
-
5
-
-
4444240785
-
Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis
-
Baker L., Brown T., Maiden M.C., Drobniewski F. Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis. Emerg. Infect. Dis. 2004, 10:1568-1577.
-
(2004)
Emerg. Infect. Dis.
, vol.10
, pp. 1568-1577
-
-
Baker, L.1
Brown, T.2
Maiden, M.C.3
Drobniewski, F.4
-
6
-
-
0032900678
-
Median-joining networks for inferring intraspecific phylogenies
-
Bandelt H.J., Forster P., Rohl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999, 16:37-48.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 37-48
-
-
Bandelt, H.J.1
Forster, P.2
Rohl, A.3
-
7
-
-
23244465130
-
In vivo phenotypic dominance in mouse mixed infections with Mycobacterium tuberculosis clinical isolates
-
Barczak A.K., Domenech P., Boshoff H.I., Reed M.B., Manca C., Kaplan G., Barry C.E. In vivo phenotypic dominance in mouse mixed infections with Mycobacterium tuberculosis clinical isolates. J. Infect. Dis. 2005, 192:600-606.
-
(2005)
J. Infect. Dis.
, vol.192
, pp. 600-606
-
-
Barczak, A.K.1
Domenech, P.2
Boshoff, H.I.3
Reed, M.B.4
Manca, C.5
Kaplan, G.6
Barry, C.E.7
-
8
-
-
0033890783
-
Mapping of IS6110 insertion sites in two epidemic strains of Mycobacterium tuberculosis
-
Beggs M.L., Eisenach K.D., Cave M.D. Mapping of IS6110 insertion sites in two epidemic strains of Mycobacterium tuberculosis. J. Clin. Microbiol. 2000, 38:2923-2928.
-
(2000)
J. Clin. Microbiol.
, vol.38
, pp. 2923-2928
-
-
Beggs, M.L.1
Eisenach, K.D.2
Cave, M.D.3
-
9
-
-
13344286314
-
Origin and interstate spread of a New York City multidrug-resistant Mycobacterium tuberculosis clone family
-
Bifani P.J., Plikaytis B.B., Kapur V., Stockbauer K., Pan X., Lutfey M.L., Moghazeh S.L., Eisner W., Daniel T.M., Kaplan M.H., Crawford J.T., Musser J.M., Kreiswirth B.N. Origin and interstate spread of a New York City multidrug-resistant Mycobacterium tuberculosis clone family. JAMA 1996, 275:452-457.
-
(1996)
JAMA
, vol.275
, pp. 452-457
-
-
Bifani, P.J.1
Plikaytis, B.B.2
Kapur, V.3
Stockbauer, K.4
Pan, X.5
Lutfey, M.L.6
Moghazeh, S.L.7
Eisner, W.8
Daniel, T.M.9
Kaplan, M.H.10
Crawford, J.T.11
Musser, J.M.12
Kreiswirth, B.N.13
-
10
-
-
0033596265
-
Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology
-
Bifani P.J., Mathema B., Liu Z., Moghazeh S.L., Shopsin B., Tempalski B., Driscol J., Frothingham R., Musser J.M., Alcabes P., Kreiswirth B.N. Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology. JAMA 1999, 282:2321-2327.
-
(1999)
JAMA
, vol.282
, pp. 2321-2327
-
-
Bifani, P.J.1
Mathema, B.2
Liu, Z.3
Moghazeh, S.L.4
Shopsin, B.5
Tempalski, B.6
Driscol, J.7
Frothingham, R.8
Musser, J.M.9
Alcabes, P.10
Kreiswirth, B.N.11
-
11
-
-
0036147534
-
Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains
-
Bifani P.J., Mathema B., Kurepina N.E., Kreiswirth B.N. Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains. Trends Microbiol. 2002, 10:45-52.
-
(2002)
Trends Microbiol.
, vol.10
, pp. 45-52
-
-
Bifani, P.J.1
Mathema, B.2
Kurepina, N.E.3
Kreiswirth, B.N.4
-
12
-
-
33646227714
-
Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
-
Brudey K., Driscoll J.R., Rigouts L., Prodinger W.M., Gori A., Al-Hajoj S.A., Allix C., Aristimuno L., Arora J., Baumanis V., Binder L., Cafrune P., Cataldi A., Cheong S., Diel R., Ellermeier C., Evans J.T., Fauville-Dufaux M., Ferdinand S., Garcia de Viedma D., Garzelli C., Gazzola L., Gomes H.M., Guttierez M.C., Hawkey P.M., van Helden P.D., Kadival G.V., Kreiswirth B.N., Kremer K., Kubin M., Kulkarni S.P., Liens B., Lillebaek T., Ho M.L., Martin C., Martin C., Mokrousov I., Narvskaia O., Ngeow Y.F., Naumann L., Niemann S., Parwati I., Rahim Z., Rasolofo-Razanamparany V., Rasolonavalona T., Rossetti M.L., Rusch-Gerdes S., Sajduda A., Samper S., Shemyakin I.G., Singh U.B., Somoskovi A., Skuce R.A., van Soolingen D., Streicher E.M., Suffys P.N., Tortoli E., Tracevska T., Vincent V., Victor T.C., Warren R.M., Yap S.F., Zaman K., Portaels F., Rastogi N., Sola C. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol. 2006, 6:23.
-
(2006)
BMC Microbiol.
, vol.6
, pp. 23
-
-
Brudey, K.1
Driscoll, J.R.2
Rigouts, L.3
Prodinger, W.M.4
Gori, A.5
Al-Hajoj, S.A.6
Allix, C.7
Aristimuno, L.8
Arora, J.9
Baumanis, V.10
Binder, L.11
Cafrune, P.12
Cataldi, A.13
Cheong, S.14
Diel, R.15
Ellermeier, C.16
Evans, J.T.17
Fauville-Dufaux, M.18
Ferdinand, S.19
Garcia de Viedma, D.20
Garzelli, C.21
Gazzola, L.22
Gomes, H.M.23
Guttierez, M.C.24
Hawkey, P.M.25
van Helden, P.D.26
Kadival, G.V.27
Kreiswirth, B.N.28
Kremer, K.29
Kubin, M.30
Kulkarni, S.P.31
Liens, B.32
Lillebaek, T.33
Ho, M.L.34
Martin, C.35
Martin, C.36
Mokrousov, I.37
Narvskaia, O.38
Ngeow, Y.F.39
Naumann, L.40
Niemann, S.41
Parwati, I.42
Rahim, Z.43
Rasolofo-Razanamparany, V.44
Rasolonavalona, T.45
Rossetti, M.L.46
Rusch-Gerdes, S.47
Sajduda, A.48
Samper, S.49
Shemyakin, I.G.50
Singh, U.B.51
Somoskovi, A.52
Skuce, R.A.53
van Soolingen, D.54
Streicher, E.M.55
Suffys, P.N.56
Tortoli, E.57
Tracevska, T.58
Vincent, V.59
Victor, T.C.60
Warren, R.M.61
Yap, S.F.62
Zaman, K.63
Portaels, F.64
Rastogi, N.65
Sola, C.66
more..
-
13
-
-
67651208032
-
The Beijing genotype is associated with young age and multidrug-resistant tuberculosis in rural Vietnam
-
Buu T.N., Huyen M.N., Lan N.T., Quy H.T., Hen N.V., Zignol M., Borgdorff M.W., Cobelens F.G., van Soolingen D. The Beijing genotype is associated with young age and multidrug-resistant tuberculosis in rural Vietnam. Int. J. Tuberc. Lung Dis. 2009, 13:900-906.
-
(2009)
Int. J. Tuberc. Lung Dis.
, vol.13
, pp. 900-906
-
-
Buu, T.N.1
Huyen, M.N.2
Lan, N.T.3
Quy, H.T.4
Hen, N.V.5
Zignol, M.6
Borgdorff, M.W.7
Cobelens, F.G.8
van Soolingen, D.9
-
14
-
-
0028851341
-
Rapid identification of a point mutation of the Mycobacterium tuberculosis catalase-peroxidase (katG) gene associated with isoniazid resistance
-
Cockerill F.R, Uhl J.R., Temesgen Z., Zhang Y., Stockman L., Roberts G.D., Williams D.L., Kline B.C. Rapid identification of a point mutation of the Mycobacterium tuberculosis catalase-peroxidase (katG) gene associated with isoniazid resistance. J. Infect. Dis. 1995, 171:240-245.
-
(1995)
J. Infect. Dis.
, vol.171
, pp. 240-245
-
-
Cockerill, F.R.1
Uhl, J.R.2
Temesgen, Z.3
Zhang, Y.4
Stockman, L.5
Roberts, G.D.6
Williams, D.L.7
Kline, B.C.8
-
15
-
-
67649300038
-
Physiology of mycobacteria
-
318-89
-
Cook G.M., Berney M., Gebhard S., Heinemann M., Cox R.A., Danilchanka O., Niederweis M. Physiology of mycobacteria. Adv. Microb. Physiol. 2009, 55(81-182). 318-89.
-
(2009)
Adv. Microb. Physiol.
, vol.55
, Issue.81-182
-
-
Cook, G.M.1
Berney, M.2
Gebhard, S.3
Heinemann, M.4
Cox, R.A.5
Danilchanka, O.6
Niederweis, M.7
-
16
-
-
78651088622
-
Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database
-
M110.002527
-
de Souza G.A., Arntzen M.O., Fortuin S., Schurch A.C., Malen H., McEvoy C.R., van Soolingen D., Thiede B., Warren R.M., Wiker H.G. Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database. Mol. Cell. Proteomics 2011, 10(1). M110.002527.
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.1
-
-
de Souza, G.A.1
Arntzen, M.O.2
Fortuin, S.3
Schurch, A.C.4
Malen, H.5
McEvoy, C.R.6
van Soolingen, D.7
Thiede, B.8
Warren, R.M.9
Wiker, H.G.10
-
17
-
-
67650650724
-
Clusters of multidrug-resistant Mycobacterium tuberculosis cases
-
Devaux I., Kremer K., Heersma H., Van Soolingen D. Clusters of multidrug-resistant Mycobacterium tuberculosis cases. Euro. Emerg. Infect. Dis. 2009, 15:1052-1060.
-
(2009)
Euro. Emerg. Infect. Dis.
, vol.15
, pp. 1052-1060
-
-
Devaux, I.1
Kremer, K.2
Heersma, H.3
Van Soolingen, D.4
-
18
-
-
0036847747
-
Global distribution of Mycobacterium tuberculosis spoligotypes
-
Filliol I., Driscoll J.R., Van Soolingen D., Kreiswirth B.N., Kremer K., Valetudie G., Anh D.D., Barlow R., Banerjee D., Bifani P.J., Brudey K., Cataldi A., Cooksey R.C., Cousins D.V., Dale J.W., Dellagostin O.A., Drobniewski F., Engelmann G., Ferdinand S., Gascoyne-Binzi D., Gordon M., Gutierrez M.C., Haas W.H., Heersma H., Kallenius G., Kassa-Kelembho E., Koivula T., Ly H.M., Makristathis A., Mammina C., Martin G., Mostrom P., Mokrousov I., Narbonne V., Narvskaya O., Nastasi A., Niobe-Eyangoh S.N., Pape J.W., Rasolofo-Razanamparany V., Ridell M., Rossetti M.L., Stauffer F., Suffys P.N., Takiff H., Texier-Maugein J., Vincent V., De Waard J.H., Sola C., Rastogi N. Global distribution of Mycobacterium tuberculosis spoligotypes. Emerg. Infect. Dis. 2002, 8:1347-1349.
-
(2002)
Emerg. Infect. Dis.
, vol.8
, pp. 1347-1349
-
-
Filliol, I.1
Driscoll, J.R.2
Van Soolingen, D.3
Kreiswirth, B.N.4
Kremer, K.5
Valetudie, G.6
Anh, D.D.7
Barlow, R.8
Banerjee, D.9
Bifani, P.J.10
Brudey, K.11
Cataldi, A.12
Cooksey, R.C.13
Cousins, D.V.14
Dale, J.W.15
Dellagostin, O.A.16
Drobniewski, F.17
Engelmann, G.18
Ferdinand, S.19
Gascoyne-Binzi, D.20
Gordon, M.21
Gutierrez, M.C.22
Haas, W.H.23
Heersma, H.24
Kallenius, G.25
Kassa-Kelembho, E.26
Koivula, T.27
Ly, H.M.28
Makristathis, A.29
Mammina, C.30
Martin, G.31
Mostrom, P.32
Mokrousov, I.33
Narbonne, V.34
Narvskaya, O.35
Nastasi, A.36
Niobe-Eyangoh, S.N.37
Pape, J.W.38
Rasolofo-Razanamparany, V.39
Ridell, M.40
Rossetti, M.L.41
Stauffer, F.42
Suffys, P.N.43
Takiff, H.44
Texier-Maugein, J.45
Vincent, V.46
De Waard, J.H.47
Sola, C.48
Rastogi, N.49
more..
-
19
-
-
0037952768
-
Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study
-
Filliol I., Driscoll J.R., van Soolingen D., Kreiswirth B.N., Kremer K., Valetudie G., Dang D.A., Barlow R., Banerjee D., Bifani P.J., Brudey K., Cataldi A., Cooksey R.C., Cousins D.V., Dale J.W., Dellagostin O.A., Drobniewski F., Engelmann G., Ferdinand S., Gascoyne-Binzi D., Gordon M., Gutierrez M.C., Haas W.H., Heersma H., Kassa-Kelembho E., Ho M.L., Makristathis A., Mammina C., Martin G., Mostrom P., Mokrousov I., Narbonne V., Narvskaya O., Nastasi A., Niobe-Eyangoh S.N., Pape J.W., Rasolofo-Razanamparany V., Ridell M., Rossetti M.L., Stauffer F., Suffys P.N., Takiff H., Texier-Maugein J., Vincent V., de Waard J.H., Sola C., Rastogi N. Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study. J. Clin. Microbiol. 2003, 41:1963-1970.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 1963-1970
-
-
Filliol, I.1
Driscoll, J.R.2
van Soolingen, D.3
Kreiswirth, B.N.4
Kremer, K.5
Valetudie, G.6
Dang, D.A.7
Barlow, R.8
Banerjee, D.9
Bifani, P.J.10
Brudey, K.11
Cataldi, A.12
Cooksey, R.C.13
Cousins, D.V.14
Dale, J.W.15
Dellagostin, O.A.16
Drobniewski, F.17
Engelmann, G.18
Ferdinand, S.19
Gascoyne-Binzi, D.20
Gordon, M.21
Gutierrez, M.C.22
Haas, W.H.23
Heersma, H.24
Kassa-Kelembho, E.25
Ho, M.L.26
Makristathis, A.27
Mammina, C.28
Martin, G.29
Mostrom, P.30
Mokrousov, I.31
Narbonne, V.32
Narvskaya, O.33
Nastasi, A.34
Niobe-Eyangoh, S.N.35
Pape, J.W.36
Rasolofo-Razanamparany, V.37
Ridell, M.38
Rossetti, M.L.39
Stauffer, F.40
Suffys, P.N.41
Takiff, H.42
Texier-Maugein, J.43
Vincent, V.44
de Waard, J.H.45
Sola, C.46
Rastogi, N.47
more..
-
20
-
-
30744460678
-
Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set
-
Filliol I., Motiwala A.S., Cavatore M., Qi W., Hazbon M.H., Bobadilla del Valle M., Fyfe J., Garcia-Garcia L., Rastogi N., Sola C., Zozio T., Guerrero M.I., Leon C.I., Crabtree J., Angiuoli S., Eisenach K.D., Durmaz R., Joloba M.L., Rendon A., Sifuentes-Osornio J., Ponce de Leon A., Cave M.D., Fleischmann R., Whittam T.S., Alland D. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J. Bacteriol. 2006, 188:759-772.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 759-772
-
-
Filliol, I.1
Motiwala, A.S.2
Cavatore, M.3
Qi, W.4
Hazbon, M.H.5
Bobadilla del Valle, M.6
Fyfe, J.7
Garcia-Garcia, L.8
Rastogi, N.9
Sola, C.10
Zozio, T.11
Guerrero, M.I.12
Leon, C.I.13
Crabtree, J.14
Angiuoli, S.15
Eisenach, K.D.16
Durmaz, R.17
Joloba, M.L.18
Rendon, A.19
Sifuentes-Osornio, J.20
Ponce de Leon, A.21
Cave, M.D.22
Fleischmann, R.23
Whittam, T.S.24
Alland, D.25
more..
-
21
-
-
40349106159
-
Control of M. tuberculosis ESAT-6 secretion and specific T cell recognition by PhoP
-
Frigui W., Bottai D., Majlessi L., Monot M., Josselin E., Brodin P., Garnier T., Gicquel B., Martin C., Leclerc C., Cole S.T., Brosch R. Control of M. tuberculosis ESAT-6 secretion and specific T cell recognition by PhoP. PLoS Pathog. 2008, 4:e33.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Frigui, W.1
Bottai, D.2
Majlessi, L.3
Monot, M.4
Josselin, E.5
Brodin, P.6
Garnier, T.7
Gicquel, B.8
Martin, C.9
Leclerc, C.10
Cole, S.T.11
Brosch, R.12
-
22
-
-
0037596510
-
The complete genome sequence of Mycobacterium bovis
-
Garnier T., Eiglmeier K., Camus J.C., Medina N., Mansoor H., Pryor M., Duthoy S., Grondin S., Lacroix C., Monsempe C., Simon S., Harris B., Atkin R., Doggett J., Mayes R., Keating L., Wheeler P.R., Parkhill J., Barrell B.G., Cole S.T., Gordon S.V., Hewinson R.G. The complete genome sequence of Mycobacterium bovis. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:7877-7882.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 7877-7882
-
-
Garnier, T.1
Eiglmeier, K.2
Camus, J.C.3
Medina, N.4
Mansoor, H.5
Pryor, M.6
Duthoy, S.7
Grondin, S.8
Lacroix, C.9
Monsempe, C.10
Simon, S.11
Harris, B.12
Atkin, R.13
Doggett, J.14
Mayes, R.15
Keating, L.16
Wheeler, P.R.17
Parkhill, J.18
Barrell, B.G.19
Cole, S.T.20
Gordon, S.V.21
Hewinson, R.G.22
more..
-
23
-
-
38949137140
-
Dissecting the genetic components of adaptation of Escherichia coli to the mouse gut
-
Giraud A., Arous S., De Paepe M., Gaboriau-Routhiau V., Bambou J.C., Rakotobe S., Lindner A.B., Taddei F., Cerf-Bensussan N. Dissecting the genetic components of adaptation of Escherichia coli to the mouse gut. PLoS Genet. 2008, 4:e2.
-
(2008)
PLoS Genet.
, vol.4
-
-
Giraud, A.1
Arous, S.2
De Paepe, M.3
Gaboriau-Routhiau, V.4
Bambou, J.C.5
Rakotobe, S.6
Lindner, A.B.7
Taddei, F.8
Cerf-Bensussan, N.9
-
24
-
-
0036686907
-
Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review
-
Glynn J.R., Whiteley J., Bifani P.J., Kremer K., van Soolingen D. Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review. Emerg. Infect. Dis. 2002, 8:843-849.
-
(2002)
Emerg. Infect. Dis.
, vol.8
, pp. 843-849
-
-
Glynn, J.R.1
Whiteley, J.2
Bifani, P.J.3
Kremer, K.4
van Soolingen, D.5
-
25
-
-
33646591556
-
Beijing/W Genotype Mycobacterium tuberculosis and drug resistance. European concerted action on new generation genetic markers and techniques for the epidemiology and control of tuberculosis
-
Glynn J.R., Kremer K., Borgdorff M.W., Mar P.R., van Soolingen D. Beijing/W Genotype Mycobacterium tuberculosis and drug resistance. European concerted action on new generation genetic markers and techniques for the epidemiology and control of tuberculosis. Emerg. Infect. Dis. 2006, 12:736-743.
-
(2006)
Emerg. Infect. Dis.
, vol.12
, pp. 736-743
-
-
Glynn, J.R.1
Kremer, K.2
Borgdorff, M.W.3
Mar, P.R.4
van Soolingen, D.5
-
26
-
-
0037083489
-
Cell-mediated immunity induced by recombinant Mycobacterium bovis Bacille Calmette-Guerin strains against an intracellular bacterial pathogen: importance of antigen secretion or membrane-targeted antigen display as lipoprotein for vaccine efficacy
-
Grode L., Kursar M., Fensterle J., Kaufmann S.H., Hess J. Cell-mediated immunity induced by recombinant Mycobacterium bovis Bacille Calmette-Guerin strains against an intracellular bacterial pathogen: importance of antigen secretion or membrane-targeted antigen display as lipoprotein for vaccine efficacy. J. Immunol. 2002, 168:1869-1876.
-
(2002)
J. Immunol.
, vol.168
, pp. 1869-1876
-
-
Grode, L.1
Kursar, M.2
Fensterle, J.3
Kaufmann, S.H.4
Hess, J.5
-
27
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
28
-
-
34248561808
-
A recently evolved sublineage of the Mycobacterium tuberculosis Beijing strain family is associated with an increased ability to spread and cause disease
-
Hanekom M., van der Spuy G.D., Streicher E., Ndabambi S.L., McEvoy C.R.E., Kidd M., Beyers N., Victor T.C., van Helden P.D., Warren R.M. A recently evolved sublineage of the Mycobacterium tuberculosis Beijing strain family is associated with an increased ability to spread and cause disease. J. Clin. Microbiol. 2007, 45:1483-1490.
-
(2007)
J. Clin. Microbiol.
, vol.45
, pp. 1483-1490
-
-
Hanekom, M.1
van der Spuy, G.D.2
Streicher, E.3
Ndabambi, S.L.4
McEvoy, C.R.E.5
Kidd, M.6
Beyers, N.7
Victor, T.C.8
van Helden, P.D.9
Warren, R.M.10
-
29
-
-
34547626381
-
Evidence that the spread of Mycobacterium tuberculosis strains with the Beijing genotype is human population dependent
-
Hanekom M., van der Spuy G.D., van Pittius N.C.G., McEvoy C.R.E., Ndabambi S.L., Victor T.C., Hoal E.G., van Helden P.D., Warren R.M. Evidence that the spread of Mycobacterium tuberculosis strains with the Beijing genotype is human population dependent. J. Clin. Microbiol. 2007, 45:2263-2266.
-
(2007)
J. Clin. Microbiol.
, vol.45
, pp. 2263-2266
-
-
Hanekom, M.1
van der Spuy, G.D.2
van Pittius, N.C.G.3
McEvoy, C.R.E.4
Ndabambi, S.L.5
Victor, T.C.6
Hoal, E.G.7
van Helden, P.D.8
Warren, R.M.9
-
30
-
-
58149174244
-
High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography
-
Hershberg R., Lipatov M., Small P.M., Sheffer H., Niemann S., Homolka S., Roach J.C., Kremer K., Petrov D.A., Feldman M.W., Gagneux S. High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography. PLoS Biol. 2008, 6:e311.
-
(2008)
PLoS Biol.
, vol.6
-
-
Hershberg, R.1
Lipatov, M.2
Small, P.M.3
Sheffer, H.4
Niemann, S.5
Homolka, S.6
Roach, J.C.7
Kremer, K.8
Petrov, D.A.9
Feldman, M.W.10
Gagneux, S.11
-
31
-
-
0030994680
-
Multidrug resistance in Mycobacterium tuberculosis
-
Heym B., Cole S.T. Multidrug resistance in Mycobacterium tuberculosis. Int. J. Antimicrob. Agents 1997, 8:61-70.
-
(1997)
Int. J. Antimicrob. Agents
, vol.8
, pp. 61-70
-
-
Heym, B.1
Cole, S.T.2
-
32
-
-
38649092410
-
Dendroscope: an interactive viewer for large phylogenetic trees
-
Huson D.H., Richter D.C., Rausch C., Dezulian T., Franz M., Rupp R. Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinformatics 2007, 8:460.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 460
-
-
Huson, D.H.1
Richter, D.C.2
Rausch, C.3
Dezulian, T.4
Franz, M.5
Rupp, R.6
-
33
-
-
54049099613
-
Population structure analysis of the Mycobacterium tuberculosis Beijing family indicates an association between certain sublineages and multidrug resistance
-
Iwamoto T., Yoshida S., Suzuki K., Wada T. Population structure analysis of the Mycobacterium tuberculosis Beijing family indicates an association between certain sublineages and multidrug resistance. Antimicrob. Agents Chemother. 2008, 52:3805-3809.
-
(2008)
Antimicrob. Agents Chemother.
, vol.52
, pp. 3805-3809
-
-
Iwamoto, T.1
Yoshida, S.2
Suzuki, K.3
Wada, T.4
-
34
-
-
19544390556
-
MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis
-
Jacques P.E., Gervais A.L., Cantin M., Lucier J.F., Dallaire G., Drouin G., Gaudreau L., Goulet J., Brzezinski R. MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis. Bioinformatics 2005, 21:2563-2565.
-
(2005)
Bioinformatics
, vol.21
, pp. 2563-2565
-
-
Jacques, P.E.1
Gervais, A.L.2
Cantin, M.3
Lucier, J.F.4
Dallaire, G.5
Drouin, G.6
Gaudreau, L.7
Goulet, J.8
Brzezinski, R.9
-
35
-
-
79958258032
-
Drug susceptibility testing using molecular techniques can enhance tuberculosis diagnosis
-
Johnson R., Jordaan A.M., Warren R., Bosman M., Young D., Nagy J.N., Wain J.R., Van Helden P.D., Victor T.C. Drug susceptibility testing using molecular techniques can enhance tuberculosis diagnosis. J. Infect. Dev. Ctries 2008, 2:40-45.
-
(2008)
J. Infect. Dev. Ctries
, vol.2
, pp. 40-45
-
-
Johnson, R.1
Jordaan, A.M.2
Warren, R.3
Bosman, M.4
Young, D.5
Nagy, J.N.6
Wain, J.R.7
Van Helden, P.D.8
Victor, T.C.9
-
36
-
-
0030911908
-
Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
-
Kamerbeek J., Schouls L., Kolk A., van Agterveld M., van Soolingen D., Kuijper S., Bunschoten A., Molhuizen H., Shaw R., Goyal M., van Embden J. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol. 1997, 35:907-914.
-
(1997)
J. Clin. Microbiol.
, vol.35
, pp. 907-914
-
-
Kamerbeek, J.1
Schouls, L.2
Kolk, A.3
van Agterveld, M.4
van Soolingen, D.5
Kuijper, S.6
Bunschoten, A.7
Molhuizen, H.8
Shaw, R.9
Goyal, M.10
van Embden, J.11
-
37
-
-
69049104258
-
From Corynebacterium glutamicum to Mycobacterium tuberculosis - towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet
-
Krawczyk J., Kohl T.A., Goesmann A., Kalinowski J., Baumbach J. From Corynebacterium glutamicum to Mycobacterium tuberculosis - towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet. Nucleic Acids Res. 2009, 37:e97.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Krawczyk, J.1
Kohl, T.A.2
Goesmann, A.3
Kalinowski, J.4
Baumbach, J.5
-
38
-
-
0032802792
-
Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility
-
Kremer K., van Soolingen D., Frothingham R., Haas W.H., Hermans P.W.M., Martin C., Palittapongarnpim P., Plikaytis B.B., Riley L.W., Yakrus M.A., Musser J.M., van Embden J.D.A. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility. J. Clin. Microbiol. 1999, 37:2607-2618.
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 2607-2618
-
-
Kremer, K.1
van Soolingen, D.2
Frothingham, R.3
Haas, W.H.4
Hermans, P.W.M.5
Martin, C.6
Palittapongarnpim, P.7
Plikaytis, B.B.8
Riley, L.W.9
Yakrus, M.A.10
Musser, J.M.11
van Embden, J.D.A.12
-
39
-
-
4644228695
-
Definition of the Beijing/W Lineage of Mycobacterium tuberculosis on the basis of genetic markers
-
Kremer K., Glynn J.R., Lillebaek T., Niemann S., Kurepina N.E., Kreiswirth B.N., Bifani P.J., van Soolingen D. Definition of the Beijing/W Lineage of Mycobacterium tuberculosis on the basis of genetic markers. J. Clin. Microbiol. 2004, 42:4040-4049.
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 4040-4049
-
-
Kremer, K.1
Glynn, J.R.2
Lillebaek, T.3
Niemann, S.4
Kurepina, N.E.5
Kreiswirth, B.N.6
Bifani, P.J.7
van Soolingen, D.8
-
40
-
-
27744590898
-
Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strains
-
Kremer K., Arnold C., Cataldi A., Gutierrez M.C., Haas W.H., Panaiotov S., Skuce R.A., Supply P., van der Zanden A.G.M., van Soolingen D. Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strains. J. Clin. Microbiol. 2005, 43:5628-5638.
-
(2005)
J. Clin. Microbiol.
, vol.43
, pp. 5628-5638
-
-
Kremer, K.1
Arnold, C.2
Cataldi, A.3
Gutierrez, M.C.4
Haas, W.H.5
Panaiotov, S.6
Skuce, R.A.7
Supply, P.8
van der Zanden, A.G.M.9
van Soolingen, D.10
-
41
-
-
63849295730
-
Vaccine-induced immunity circumvented by typical Mycobacterium tuberculosis Beijing strains
-
Kremer K., van-der-Werf M.J., Au B.K., Anh D.D., Kam K.M., van-Doorn H.R., Borgdorff M.W., van-Soolingen D. Vaccine-induced immunity circumvented by typical Mycobacterium tuberculosis Beijing strains. Emerg. Infect. Dis. 2009, 15:335-339.
-
(2009)
Emerg. Infect. Dis.
, vol.15
, pp. 335-339
-
-
Kremer, K.1
van-der-Werf, M.J.2
Au, B.K.3
Anh, D.D.4
Kam, K.M.5
van-Doorn, H.R.6
Borgdorff, M.W.7
van-Soolingen, D.8
-
42
-
-
0013566450
-
Characterization of the phylogenetic distribution and chromosomal insertion sites of five IS6110 elements in Mycobacterium tuberculosis: non-random integration in the dnaA-dnaN region
-
Kurepina N.E., Sreevatsan S., Plikaytis B.B., Bifani P.J., Connell N.D., Donnelly R.J., van Sooligen D., Musser J.M., Kreiswirth B.N. Characterization of the phylogenetic distribution and chromosomal insertion sites of five IS6110 elements in Mycobacterium tuberculosis: non-random integration in the dnaA-dnaN region. Tuber. Lung Dis. 1998, 79:31-42.
-
(1998)
Tuber. Lung Dis.
, vol.79
, pp. 31-42
-
-
Kurepina, N.E.1
Sreevatsan, S.2
Plikaytis, B.B.3
Bifani, P.J.4
Connell, N.D.5
Donnelly, R.J.6
van Sooligen, D.7
Musser, J.M.8
Kreiswirth, B.N.9
-
43
-
-
33646242255
-
Mutations in mutT genes of Mycobacterium tuberculosis isolates of Beijing genotype
-
Lari N., Rindi L., Bonanni D., Tortoli E., Garzelli C. Mutations in mutT genes of Mycobacterium tuberculosis isolates of Beijing genotype. J. Med. Microbiol. 2006, 55:599-603.
-
(2006)
J. Med. Microbiol.
, vol.55
, pp. 599-603
-
-
Lari, N.1
Rindi, L.2
Bonanni, D.3
Tortoli, E.4
Garzelli, C.5
-
44
-
-
0034023994
-
Exclusive mutations related to isoniazid and ethionamide resistance among Mycobacterium tuberculosis isolates from Korea
-
Lee H., Cho S.N., Bang H.E., Lee J.H., Bai G.H., Kim S.J., Kim J.D. Exclusive mutations related to isoniazid and ethionamide resistance among Mycobacterium tuberculosis isolates from Korea. Int. J. Tuberc. Lung Dis. 2000, 4:441-447.
-
(2000)
Int. J. Tuberc. Lung Dis.
, vol.4
, pp. 441-447
-
-
Lee, H.1
Cho, S.N.2
Bang, H.E.3
Lee, J.H.4
Bai, G.H.5
Kim, S.J.6
Kim, J.D.7
-
45
-
-
38849102911
-
Mutation in the transcriptional regulator PhoP contributes to avirulence of Mycobacterium tuberculosis H37Ra strain
-
Lee J.S., Krause R., Schreiber J., Mollenkopf H.J., Kowall J., Stein R., Jeon B.Y., Kwak J.Y., Song M.K., Patron J.P., Jorg S., Roh K., Cho S.N., Kaufmann S.H. Mutation in the transcriptional regulator PhoP contributes to avirulence of Mycobacterium tuberculosis H37Ra strain. Cell Host Microb. 2008, 3:97-103.
-
(2008)
Cell Host Microb.
, vol.3
, pp. 97-103
-
-
Lee, J.S.1
Krause, R.2
Schreiber, J.3
Mollenkopf, H.J.4
Kowall, J.5
Stein, R.6
Jeon, B.Y.7
Kwak, J.Y.8
Song, M.K.9
Patron, J.P.10
Jorg, S.11
Roh, K.12
Cho, S.N.13
Kaufmann, S.H.14
-
46
-
-
0036839651
-
Differences in rate and variability of intracellular growth of a panel of Mycobacterium tuberculosis clinical isolates within a human monocyte model
-
Li Q., Whalen C.C., Albert J.M., Larkin R., Zukowski L., Cave M.D., Silver R.F. Differences in rate and variability of intracellular growth of a panel of Mycobacterium tuberculosis clinical isolates within a human monocyte model. Infect. Immun. 2002, 70:6489-6493.
-
(2002)
Infect. Immun.
, vol.70
, pp. 6489-6493
-
-
Li, Q.1
Whalen, C.C.2
Albert, J.M.3
Larkin, R.4
Zukowski, L.5
Cave, M.D.6
Silver, R.F.7
-
47
-
-
0038496713
-
A marked difference in pathogenesis and immune response induced by different Mycobacterium tuberculosis genotypes
-
Lopez B., Aguilar D., Orozco H., Burger M., Espitia C., Ritacco V., Barrera L., Kremer K., Hernandez-Pando R., Huygen K., van Soolingen D. A marked difference in pathogenesis and immune response induced by different Mycobacterium tuberculosis genotypes. Clin. Exp. Immunol. 2003, 133:30-37.
-
(2003)
Clin. Exp. Immunol.
, vol.133
, pp. 30-37
-
-
Lopez, B.1
Aguilar, D.2
Orozco, H.3
Burger, M.4
Espitia, C.5
Ritacco, V.6
Barrera, L.7
Kremer, K.8
Hernandez-Pando, R.9
Huygen, K.10
van Soolingen, D.11
-
48
-
-
34548256898
-
The role of IS6110 in the evolution of Mycobacterium tuberculosis
-
McEvoy C.R., Falmer A.A., Gey van Pittius N.C., Victor T.C., van Helden P.D., Warren R.M. The role of IS6110 in the evolution of Mycobacterium tuberculosis. Tuberculosis (Edinb) 2007, 87:393-404.
-
(2007)
Tuberculosis (Edinb)
, vol.87
, pp. 393-404
-
-
McEvoy, C.R.1
Falmer, A.A.2
Gey van Pittius, N.C.3
Victor, T.C.4
van Helden, P.D.5
Warren, R.M.6
-
49
-
-
70350499473
-
Evidence for a rapid rate of molecular evolution at the hypervariable and immunogenic Mycobacterium tuberculosis PPE38 gene region
-
McEvoy C.R., van Helden P.D., Warren R.M., Gey van Pittius N.C. Evidence for a rapid rate of molecular evolution at the hypervariable and immunogenic Mycobacterium tuberculosis PPE38 gene region. BMC Evol. Biol. 2009, 9:237.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 237
-
-
McEvoy, C.R.1
van Helden, P.D.2
Warren, R.M.3
Gey van Pittius, N.C.4
-
50
-
-
0036221099
-
Molecular characterization of multiple-drug-resistant Mycobacterium tuberculosis isolates from northwestern Russia and analysis of rifampin resistance using RNA/RNA mismatch analysis as compared to the line probe assay and sequencing of the rpoB gene
-
Mokrousov I., Filliol I., Legrand E., Sola C., Otten T., Vyshnevskaya E., Limeschenko E., Vyshnevskiy B., Narvskaya O., Rastogi N. Molecular characterization of multiple-drug-resistant Mycobacterium tuberculosis isolates from northwestern Russia and analysis of rifampin resistance using RNA/RNA mismatch analysis as compared to the line probe assay and sequencing of the rpoB gene. Res. Microbiol. 2002, 153:213-219.
-
(2002)
Res. Microbiol.
, vol.153
, pp. 213-219
-
-
Mokrousov, I.1
Filliol, I.2
Legrand, E.3
Sola, C.4
Otten, T.5
Vyshnevskaya, E.6
Limeschenko, E.7
Vyshnevskiy, B.8
Narvskaya, O.9
Rastogi, N.10
-
51
-
-
0036898991
-
Phylogenetic reconstruction within Mycobacterium tuberculosis Beijing genotype in northwestern Russia
-
Mokrousov I., Narvskaya O., Otten T., Vyazovaya A., Limeschenko E., Steklova L., Vyshnevskyi B. Phylogenetic reconstruction within Mycobacterium tuberculosis Beijing genotype in northwestern Russia. Res. Microbiol. 2002, 153:629-637.
-
(2002)
Res. Microbiol.
, vol.153
, pp. 629-637
-
-
Mokrousov, I.1
Narvskaya, O.2
Otten, T.3
Vyazovaya, A.4
Limeschenko, E.5
Steklova, L.6
Vyshnevskyi, B.7
-
52
-
-
33746912761
-
Evolution of drug resistance in different sublineages of Mycobacterium tuberculosis Beijing genotype
-
Mokrousov I., Jiao W.W., Sun G.Z., Liu J.W., Valcheva V., Li M., Narvskaya O., Shen A.D. Evolution of drug resistance in different sublineages of Mycobacterium tuberculosis Beijing genotype. Antimicrob. Agents Chemother. 2006, 50:2820-2823.
-
(2006)
Antimicrob. Agents Chemother.
, vol.50
, pp. 2820-2823
-
-
Mokrousov, I.1
Jiao, W.W.2
Sun, G.Z.3
Liu, J.W.4
Valcheva, V.5
Li, M.6
Narvskaya, O.7
Shen, A.D.8
-
53
-
-
70549103951
-
Comparative genomic and phylogeographic analysis of Mycobacterium leprae
-
Monot M., Honore N., Garnier T., Zidane N., Sherafi D., Paniz-Mondolfi A., Matsuoka M., Taylor G.M., Donoghue H.D., Bouwman A., Mays S., Watson C., Lockwood D., Khamispour A., Dowlati Y., Jianping S., Rea T.H., Vera-Cabrera L., Stefani M.M., Banu S., Macdonald M., Sapkota B.R., Spencer J.S., Thomas J., Harshman K., Singh P., Busso P., Gattiker A., Rougemont J., Brennan P.J., Cole S.T. Comparative genomic and phylogeographic analysis of Mycobacterium leprae. Nat. Genet. 2009, 41:1282-1289.
-
(2009)
Nat. Genet.
, vol.41
, pp. 1282-1289
-
-
Monot, M.1
Honore, N.2
Garnier, T.3
Zidane, N.4
Sherafi, D.5
Paniz-Mondolfi, A.6
Matsuoka, M.7
Taylor, G.M.8
Donoghue, H.D.9
Bouwman, A.10
Mays, S.11
Watson, C.12
Lockwood, D.13
Khamispour, A.14
Dowlati, Y.15
Jianping, S.16
Rea, T.H.17
Vera-Cabrera, L.18
Stefani, M.M.19
Banu, S.20
Macdonald, M.21
Sapkota, B.R.22
Spencer, J.S.23
Thomas, J.24
Harshman, K.25
Singh, P.26
Busso, P.27
Gattiker, A.28
Rougemont, J.29
Brennan, P.J.30
Cole, S.T.31
more..
-
54
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M., Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 1986, 3:418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
55
-
-
70350719440
-
Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints
-
Niemann S., Koser C.U., Gagneux S., Plinke C., Homolka S., Bignell H., Carter R.J., Cheetham R.K., Cox A., Gormley N.A., Kokko-Gonzales P., Murray L.J., Rigatti R., Smith V.P., Arends F.P., Cox H.S., Smith G., Archer J.A. Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints. PLoS One 2009, 4:e7407.
-
(2009)
PLoS One
, vol.4
-
-
Niemann, S.1
Koser, C.U.2
Gagneux, S.3
Plinke, C.4
Homolka, S.5
Bignell, H.6
Carter, R.J.7
Cheetham, R.K.8
Cox, A.9
Gormley, N.A.10
Kokko-Gonzales, P.11
Murray, L.J.12
Rigatti, R.13
Smith, V.P.14
Arends, F.P.15
Cox, H.S.16
Smith, G.17
Archer, J.A.18
-
57
-
-
74549118978
-
Possible underlying mechanisms for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains
-
Parwati I., van Crevel R., van Soolingen D. Possible underlying mechanisms for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains. Lancet Infect Dis. 2010, 10:103-111.
-
(2010)
Lancet Infect Dis.
, vol.10
, pp. 103-111
-
-
Parwati, I.1
van Crevel, R.2
van Soolingen, D.3
-
58
-
-
67651149484
-
Phylogenetic understanding of clonal populations in an era of whole genome sequencing
-
Pearson T., Okinaka R.T., Foster J.T., Keim P. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infect. Genet. Evol. 2009, 9:1010-1019.
-
(2009)
Infect. Genet. Evol.
, vol.9
, pp. 1010-1019
-
-
Pearson, T.1
Okinaka, R.T.2
Foster, J.T.3
Keim, P.4
-
59
-
-
67650601963
-
Evolution of transcriptional regulatory circuits in bacteria
-
Perez J.C., Groisman E.A. Evolution of transcriptional regulatory circuits in bacteria. Cell 2009, 138:233-244.
-
(2009)
Cell
, vol.138
, pp. 233-244
-
-
Perez, J.C.1
Groisman, E.A.2
-
60
-
-
0028306454
-
Multiplex PCR assay specific for the multidrug-resistant strain W of Mycobacterium tuberculosis
-
Plikaytis B.B., Marden J.L., Crawford J.T., Woodley C.L., Butler W.R., Shinnick T.M. Multiplex PCR assay specific for the multidrug-resistant strain W of Mycobacterium tuberculosis. J. Clin. Microbiol. 1994, 32:1542-1546.
-
(1994)
J. Clin. Microbiol.
, vol.32
, pp. 1542-1546
-
-
Plikaytis, B.B.1
Marden, J.L.2
Crawford, J.T.3
Woodley, C.L.4
Butler, W.R.5
Shinnick, T.M.6
-
61
-
-
70349668297
-
Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing
-
Qi W., Kaser M., Roltgen K., Yeboah-Manu D., Pluschke G. Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing. PLoS Pathog. 2009, 5:e1000580.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Qi, W.1
Kaser, M.2
Roltgen, K.3
Yeboah-Manu, D.4
Pluschke, G.5
-
62
-
-
0038724818
-
Mutations in putative mutator genes of Mycobacterium tuberculosis strains of the W-Beijing family
-
Rad M.E., Bifani P., Martin C., Kremer K., Samper S., Rauzier J., et al. Mutations in putative mutator genes of Mycobacterium tuberculosis strains of the W-Beijing family. Emerg. Infect. Dis. 2003, 44:838-845.
-
(2003)
Emerg. Infect. Dis.
, vol.44
, pp. 838-845
-
-
Rad, M.E.1
Bifani, P.2
Martin, C.3
Kremer, K.4
Samper, S.5
Rauzier, J.6
-
63
-
-
34147167504
-
The W-Beijing lineage of Mycobacterium tuberculosis overproduces triglycerides and has the DosR dormancy regulon constitutively upregulated
-
3rd
-
Reed M.B., Gagneux S., Deriemer K., Small P.M., Barry C.E., 3rd The W-Beijing lineage of Mycobacterium tuberculosis overproduces triglycerides and has the DosR dormancy regulon constitutively upregulated. J. Bacteriol. 2007, 189:2583-2589.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2583-2589
-
-
Reed, M.B.1
Gagneux, S.2
Deriemer, K.3
Small, P.M.4
Barry, C.E.5
-
64
-
-
0010459544
-
Dynamics of bacterial colonisation in the respiratory tract of patients with cystic fibrosis
-
Renders N., Verbrugh H., Van Belkum A. Dynamics of bacterial colonisation in the respiratory tract of patients with cystic fibrosis. Infect. Genet. Evol. 2001, 1:29-39.
-
(2001)
Infect. Genet. Evol.
, vol.1
, pp. 29-39
-
-
Renders, N.1
Verbrugh, H.2
Van Belkum, A.3
-
65
-
-
57549098790
-
Evolutionary pathway of the Beijing lineage of Mycobacterium tuberculosis based on genomic deletions and mutT genes polymorphisms
-
Rindi L., Lari N., Cuccu B., Garzelli C. Evolutionary pathway of the Beijing lineage of Mycobacterium tuberculosis based on genomic deletions and mutT genes polymorphisms. Infect. Genet. Evol. 2009, 9:48-53.
-
(2009)
Infect. Genet. Evol.
, vol.9
, pp. 48-53
-
-
Rindi, L.1
Lari, N.2
Cuccu, B.3
Garzelli, C.4
-
66
-
-
61449239026
-
Tuberculosis drug resistance mutation database
-
Sandgren A., Strong M., Muthukrishnan P., Weiner B.K., Church G.M., Murray M.B. Tuberculosis drug resistance mutation database. PLoS Med. 2009, 6:e2.
-
(2009)
PLoS Med.
, vol.6
-
-
Sandgren, A.1
Strong, M.2
Muthukrishnan, P.3
Weiner, B.K.4
Church, G.M.5
Murray, M.B.6
-
67
-
-
72449138052
-
The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale
-
Schürch A.C., Kremer K., Kiers A., Daviena O., Boeree M.J., Siezen R., Smith N.H., van Soolingen D. The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale. Infect. Genet. Evol. 2010, 10:108-114.
-
(2010)
Infect. Genet. Evol.
, vol.10
, pp. 108-114
-
-
Schürch, A.C.1
Kremer, K.2
Kiers, A.3
Daviena, O.4
Boeree, M.J.5
Siezen, R.6
Smith, N.H.7
van Soolingen, D.8
-
68
-
-
33646179775
-
Functional insights from the molecular modelling of a novel two-component system
-
Shrivastava R., Das D.R., Wiker H.G., Das A.K. Functional insights from the molecular modelling of a novel two-component system. Biochem. Biophys. Res. Commun. 2006, 344:1327-1333.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.344
, pp. 1327-1333
-
-
Shrivastava, R.1
Das, D.R.2
Wiker, H.G.3
Das, A.K.4
-
69
-
-
64049089283
-
Intra- and intermolecular domain interactions among novel two-component system proteins coded by Rv0600c, Rv0601c and Rv0602c of Mycobacterium tuberculosis
-
Shrivastava R., Ghosh A.K., Das A.K. Intra- and intermolecular domain interactions among novel two-component system proteins coded by Rv0600c, Rv0601c and Rv0602c of Mycobacterium tuberculosis. Microbiology 2009, 155:772-779.
-
(2009)
Microbiology
, vol.155
, pp. 772-779
-
-
Shrivastava, R.1
Ghosh, A.K.2
Das, A.K.3
-
70
-
-
46449110348
-
The phenolic glycolipid of Mycobacterium tuberculosis differentially modulates the early host cytokine response but does not in itself confer hypervirulence
-
Sinsimer D., Huet G., Manca C., Tsenova L., Koo M.S., Kurepina N., Kana B., Mathema B., Marras S.A., Kreiswirth B.N., Guilhot C., Kaplan G. The phenolic glycolipid of Mycobacterium tuberculosis differentially modulates the early host cytokine response but does not in itself confer hypervirulence. Infect. Immun. 2008, 76:3027-3036.
-
(2008)
Infect. Immun.
, vol.76
, pp. 3027-3036
-
-
Sinsimer, D.1
Huet, G.2
Manca, C.3
Tsenova, L.4
Koo, M.S.5
Kurepina, N.6
Kana, B.7
Mathema, B.8
Marras, S.A.9
Kreiswirth, B.N.10
Guilhot, C.11
Kaplan, G.12
-
71
-
-
67649407565
-
Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis
-
Smith N.H., Hewinson R.G., Kremer K., Brosch R., Gordon S.V. Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis. Nat. Rev. Microbiol. 2009, 7:537-544.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 537-544
-
-
Smith, N.H.1
Hewinson, R.G.2
Kremer, K.3
Brosch, R.4
Gordon, S.V.5
-
72
-
-
42449126680
-
Spread of a low-fitness drug-resistant Mycobacterium tuberculosis strain in a setting of high human immunodeficiency virus prevalence
-
Strauss O.J., Warren R.M., Jordaan A., Streicher E.M., Hanekom M., Falmer A.A., Albert H., Trollip A., Hoosain E., van Helden P.D., Victor T.C. Spread of a low-fitness drug-resistant Mycobacterium tuberculosis strain in a setting of high human immunodeficiency virus prevalence. J. Clin. Microbiol. 2008, 46:1514-1516.
-
(2008)
J. Clin. Microbiol.
, vol.46
, pp. 1514-1516
-
-
Strauss, O.J.1
Warren, R.M.2
Jordaan, A.3
Streicher, E.M.4
Hanekom, M.5
Falmer, A.A.6
Albert, H.7
Trollip, A.8
Hoosain, E.9
van Helden, P.D.10
Victor, T.C.11
-
73
-
-
34247115528
-
Genotype and phenotype relationships and transmission analysis of drug-resistant tuberculosis in Singapore
-
Sun Y.J., Lee A.S., Wong S.Y., Heersma H., Kremer K., van Soolingen D., Paton N.I. Genotype and phenotype relationships and transmission analysis of drug-resistant tuberculosis in Singapore. Int. J. Tuberc. Lung Dis. 2007, 11:436-442.
-
(2007)
Int. J. Tuberc. Lung Dis.
, vol.11
, pp. 436-442
-
-
Sun, Y.J.1
Lee, A.S.2
Wong, S.Y.3
Heersma, H.4
Kremer, K.5
van Soolingen, D.6
Paton, N.I.7
-
74
-
-
43149116352
-
Interdomain interaction reconstitutes the functionality of PknA, a eukaryotic type Ser/Thr kinase from Mycobacterium tuberculosis
-
Thakur M., Chaba R., Mondal A.K., Chakraborti P.K. Interdomain interaction reconstitutes the functionality of PknA, a eukaryotic type Ser/Thr kinase from Mycobacterium tuberculosis. J. Biol. Chem. 2008, 283:8023-8033.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 8023-8033
-
-
Thakur, M.1
Chaba, R.2
Mondal, A.K.3
Chakraborti, P.K.4
-
75
-
-
53149116291
-
Ability of PknA, a mycobacterial eukaryotic-type serine/threonine kinase, to transphosphorylate MurD, a ligase involved in the process of peptidoglycan biosynthesis
-
Thakur M., Chakraborti P.K. Ability of PknA, a mycobacterial eukaryotic-type serine/threonine kinase, to transphosphorylate MurD, a ligase involved in the process of peptidoglycan biosynthesis. Biochem. J. 2008, 415:27-33.
-
(2008)
Biochem. J.
, vol.415
, pp. 27-33
-
-
Thakur, M.1
Chakraborti, P.K.2
-
76
-
-
35349031788
-
Beijing family Mycobacterium tuberculosis strains differ in their intracellular growth in THP-1 macrophages
-
Theus S., Eisenach K., Fomukong N., Silver R.F., Cave M.D. Beijing family Mycobacterium tuberculosis strains differ in their intracellular growth in THP-1 macrophages. Int. J. Tuberc. Lung Dis. 2007, 11:1087-1093.
-
(2007)
Int. J. Tuberc. Lung Dis.
, vol.11
, pp. 1087-1093
-
-
Theus, S.1
Eisenach, K.2
Fomukong, N.3
Silver, R.F.4
Cave, M.D.5
-
77
-
-
22144461417
-
Genomic deletions classify the Beijing/W strains as a distinct genetic lineage of Mycobacterium tuberculosis
-
Tsolaki A.G., Gagneux S., Pym A.S., Goguet de la Salmoniere Y.-O.L., Kreiswirth B.N., Van Soolingen D., Small P.M. Genomic deletions classify the Beijing/W strains as a distinct genetic lineage of Mycobacterium tuberculosis. J. Clin. Microbiol. 2005, 43:3185-3191.
-
(2005)
J. Clin. Microbiol.
, vol.43
, pp. 3185-3191
-
-
Tsolaki, A.G.1
Gagneux, S.2
Pym, A.S.3
Goguet de la Salmoniere, Y.-O.L.4
Kreiswirth, B.N.5
Van Soolingen, D.6
Small, P.M.7
-
78
-
-
0027498478
-
Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology
-
van Embden J.D., Cave M.D., Crawford J.T., Dale J.W., Eisenach K.D., Gicquel B., Hermans P., Martin C., McAdam R., Shinnick T.M., et al. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J. Clin. Microbiol. 1993, 31:406-409.
-
(1993)
J. Clin. Microbiol.
, vol.31
, pp. 406-409
-
-
van Embden, J.D.1
Cave, M.D.2
Crawford, J.T.3
Dale, J.W.4
Eisenach, K.D.5
Gicquel, B.6
Hermans, P.7
Martin, C.8
McAdam, R.9
Shinnick, T.M.10
-
79
-
-
56249148550
-
Second-line drug resistance in multidrug-resistant tuberculosis cases of various origins in the Netherlands
-
van Ingen J., Boeree M.J., Wright A., van der Laan T., Dekhuijzen P.N., van Soolingen D. Second-line drug resistance in multidrug-resistant tuberculosis cases of various origins in the Netherlands. Int. J. Tuberc. Lung Dis. 2008, 12:1295-1299.
-
(2008)
Int. J. Tuberc. Lung Dis.
, vol.12
, pp. 1295-1299
-
-
van Ingen, J.1
Boeree, M.J.2
Wright, A.3
van der Laan, T.4
Dekhuijzen, P.N.5
van Soolingen, D.6
-
80
-
-
0028838407
-
Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia
-
van Soolingen D., Qian L., de Haas P.E., Douglas J.T., Traore H., Portaels F., Qing H.Z., Enkhsaikan D., Nymadawa P., van Embden J.D. Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia. J. Clin. Microbiol. 1995, 33:3234-3238.
-
(1995)
J. Clin. Microbiol.
, vol.33
, pp. 3234-3238
-
-
van Soolingen, D.1
Qian, L.2
de Haas, P.E.3
Douglas, J.T.4
Traore, H.5
Portaels, F.6
Qing, H.Z.7
Enkhsaikan, D.8
Nymadawa, P.9
van Embden, J.D.10
-
81
-
-
0033711560
-
Mutations at amino acid position 315 of the katG gene are associated with high-level resistance to isoniazid, other drug resistance, and successful transmission of Mycobacterium tuberculosis in the Netherlands
-
van Soolingen D., de Haas P.E., van Doorn H.R., Kuijper E., Rinder H., Borgdorff M.W. Mutations at amino acid position 315 of the katG gene are associated with high-level resistance to isoniazid, other drug resistance, and successful transmission of Mycobacterium tuberculosis in the Netherlands. J. Infect. Dis. 2000, 182:1788-1790.
-
(2000)
J. Infect. Dis.
, vol.182
, pp. 1788-1790
-
-
van Soolingen, D.1
de Haas, P.E.2
van Doorn, H.R.3
Kuijper, E.4
Rinder, H.5
Borgdorff, M.W.6
-
82
-
-
0037850685
-
Restriction fragment length polymorphism typing of mycobacteria
-
Humana Press Inc., Totowa, NJ, T. Parish, N.G. Stoker (Eds.)
-
van Soolingen D., De Haas P., Kremer K. Restriction fragment length polymorphism typing of mycobacteria. Mycobacterium tuberculosis Protocols 2001, 165-203. Humana Press Inc., Totowa, NJ. T. Parish, N.G. Stoker (Eds.).
-
(2001)
Mycobacterium tuberculosis Protocols
, pp. 165-203
-
-
van Soolingen, D.1
De Haas, P.2
Kremer, K.3
-
83
-
-
78049484011
-
Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces
-
Venselaar H., Te Beek T.A., Kuipers R.K., Hekkelman M.L., Vriend G. Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces. BMC Bioinformatics 2010, 11:548.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 548
-
-
Venselaar, H.1
Te Beek, T.A.2
Kuipers, R.K.3
Hekkelman, M.L.4
Vriend, G.5
-
84
-
-
33846894300
-
Spread of an emerging Mycobacterium tuberculosis drug-resistant strain in the Western Cape of South Africa
-
Victor T.C., Streicher E.M., Kewley C., Jordaan A.M., van der Spuy G.D., Bosman M., Louw H., Murray M., Young D., van Helden P.D., Warren R.M. Spread of an emerging Mycobacterium tuberculosis drug-resistant strain in the Western Cape of South Africa. Int. J. Tuberc. Lung Dis. 2007, 11:195-201.
-
(2007)
Int. J. Tuberc. Lung Dis.
, vol.11
, pp. 195-201
-
-
Victor, T.C.1
Streicher, E.M.2
Kewley, C.3
Jordaan, A.M.4
van der Spuy, G.D.5
Bosman, M.6
Louw, H.7
Murray, M.8
Young, D.9
van Helden, P.D.10
Warren, R.M.11
-
85
-
-
67651119821
-
Allelic diversity of variable number of tandem repeats provides phylogenetic clues regarding the Mycobacterium tuberculosis Beijing family
-
Wada T., Iwamoto T. Allelic diversity of variable number of tandem repeats provides phylogenetic clues regarding the Mycobacterium tuberculosis Beijing family. Infect. Genet. Evol. 2009, 9:921-926.
-
(2009)
Infect. Genet. Evol.
, vol.9
, pp. 921-926
-
-
Wada, T.1
Iwamoto, T.2
-
86
-
-
58149314011
-
Genetic diversity of the Mycobacterium tuberculosis Beijing family in East Asia revealed through refined population structure analysis
-
Wada T., Iwamoto T., Maeda S. Genetic diversity of the Mycobacterium tuberculosis Beijing family in East Asia revealed through refined population structure analysis. FEMS Microbiol. Lett. 2009, 291:35-43.
-
(2009)
FEMS Microbiol. Lett.
, vol.291
, pp. 35-43
-
-
Wada, T.1
Iwamoto, T.2
Maeda, S.3
-
87
-
-
65649115454
-
Activation of the eis gene in a W-Beijing strain of Mycobacterium tuberculosis correlates with increased SigA levels and enhanced intracellular growth
-
Wu S., Barnes P.F., Samten B., Pang X., Rodrigue S., Ghanny S., Soteropoulos P., Gaudreau L., Howard S.T. Activation of the eis gene in a W-Beijing strain of Mycobacterium tuberculosis correlates with increased SigA levels and enhanced intracellular growth. Microbiology 2009, 155:1272-1281.
-
(2009)
Microbiology
, vol.155
, pp. 1272-1281
-
-
Wu, S.1
Barnes, P.F.2
Samten, B.3
Pang, X.4
Rodrigue, S.5
Ghanny, S.6
Soteropoulos, P.7
Gaudreau, L.8
Howard, S.T.9
-
88
-
-
12144286046
-
The principal sigma factor sigA mediates enhanced growth of Mycobacterium tuberculosis in vivo
-
Wu S., Howard S.T., Lakey D.L., Kipnis A., Samten B., Safi H., Gruppo V., Wizel B., Shams H., Basaraba R.J., Orme I.M., Barnes P.F. The principal sigma factor sigA mediates enhanced growth of Mycobacterium tuberculosis in vivo. Mol. Microbiol. 2004, 51:1551-1562.
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 1551-1562
-
-
Wu, S.1
Howard, S.T.2
Lakey, D.L.3
Kipnis, A.4
Samten, B.5
Safi, H.6
Gruppo, V.7
Wizel, B.8
Shams, H.9
Basaraba, R.J.10
Orme, I.M.11
Barnes, P.F.12
-
89
-
-
34248669040
-
KaKs_Calculator: calculating Ka and Ks through model selection and model averaging
-
Zhang Z., Li J., Zhao X.Q., Wang J., Wong G.K., Yu J. KaKs_Calculator: calculating Ka and Ks through model selection and model averaging. Genom. Proteom. Bioinform. 2006, 4:259-263.
-
(2006)
Genom. Proteom. Bioinform.
, vol.4
, pp. 259-263
-
-
Zhang, Z.1
Li, J.2
Zhao, X.Q.3
Wang, J.4
Wong, G.K.5
Yu, J.6
-
90
-
-
48649088321
-
Genetic basis of virulence attenuation revealed by comparative genomic analysis of Mycobacterium tuberculosis strain H37Ra versus H37Rv
-
Zheng H., Lu L., Wang B., Pu S., Zhang X., Zhu G., Shi W., Zhang L., Wang H., Wang S., Zhao G., Zhang Y. Genetic basis of virulence attenuation revealed by comparative genomic analysis of Mycobacterium tuberculosis strain H37Ra versus H37Rv. PLoS ONE 2008, 3:e2375.
-
(2008)
PLoS ONE
, vol.3
-
-
Zheng, H.1
Lu, L.2
Wang, B.3
Pu, S.4
Zhang, X.5
Zhu, G.6
Shi, W.7
Zhang, L.8
Wang, H.9
Wang, S.10
Zhao, G.11
Zhang, Y.12
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