메뉴 건너뛰기




Volumn 70, Issue 7, 2004, Pages 4242-4248

Molecular analysis of carbon monoxide-oxidizing bacteria associated with recent Hawaiian volcanic deposits

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE DIVERSITY; OXIDIZERS;

EID: 3242771544     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.70.7.4242-4248.2004     Document Type: Article
Times cited : (55)

References (35)
  • 1
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
    • Barns, S. M., S. L. Takala, and C. R. Kuske. 1999. Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl. Environ. Microbiol. 65:1731-1737.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1731-1737
    • Barns, S.M.1    Takala, S.L.2    Kuske, C.R.3
  • 2
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deForestation
    • Borneman, J., and E. W. Triplett, 1997. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deForestation. Appl. Environ. Microbiol. 63:2647-2653.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 3
    • 0033015223 scopus 로고    scopus 로고
    • Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns, M. A., J. R. Stephen, G. A. Kowalchuk, J. I. Prosser, and E. A. Paul. 1999. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl. Environ. Microbiol. 65:2994-3000.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2994-3000
    • Bruns, M.A.1    Stephen, J.R.2    Kowalchuk, G.A.3    Prosser, J.I.4    Paul, E.A.5
  • 4
    • 0033863805 scopus 로고    scopus 로고
    • Changes in asymbiotic, heterotrophic nitrogen fixation on leaf litter of Metrosideros polymorpha with long-term ecosystem development in Hawaii
    • Crews, T. E., H. Farrington, and P. M. Vitousek. 2000. Changes in asymbiotic, heterotrophic nitrogen fixation on leaf litter of Metrosideros polymorpha with long-term ecosystem development in Hawaii. Ecosystems 3:386-395.
    • (2000) Ecosystems , vol.3 , pp. 386-395
    • Crews, T.E.1    Farrington, H.2    Vitousek, P.M.3
  • 5
    • 0035489394 scopus 로고    scopus 로고
    • Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris
    • Dedysh, S. V., M. Derakshani, and W. Liesack. 2001. Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris. Appl. Environ. Microbiol. 67:4850-4857.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4850-4857
    • Dedysh, S.V.1    Derakshani, M.2    Liesack, W.3
  • 6
    • 0030762263 scopus 로고    scopus 로고
    • Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils
    • Felske, A., H. Rheims, A. Wolterink E. Stackebrandt, and A. D. L. Akkermans. 1997. Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils. Microbiology 143: 2983-2989
    • (1997) Microbiology , vol.143 , pp. 2983-2989
    • Felske, A.1    Rheims, H.2    Wolterink, A.3    Stackebrandt, E.4    Akkermans, A.D.L.5
  • 7
    • 0035490873 scopus 로고    scopus 로고
    • Family- and genus-level 16S rRNA-targeted oligonucleotide probes for ecological studies of methanotrophic bacteria
    • Gulledge, J., A. Ahmed, P. A. Steudler, W. J. Pomerantz, and C. M. Cavanaugh. 2001. Family- and genus-level 16S rRNA-targeted oligonucleotide probes for ecological studies of methanotrophic bacteria. Appl. Environ. Microbiol. 67:4726-4733.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4726-4733
    • Gulledge, J.1    Ahmed, A.2    Steudler, P.A.3    Pomerantz, W.J.4    Cavanaugh, C.M.5
  • 8
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    • Janssen, P. H., P. S. Yates, B. E. Ginton, P. M. Taylor, and M. Sait. 2002. Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl. Environ. Microbiol. 68:2391-2396.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Ginton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 9
    • 0032885353 scopus 로고    scopus 로고
    • Cloning and molecular characterization of the genes for carbon monoxide dehydrogenase and localization of molybdopterin, flavin adenine dinucleotide, and iron-sulfur centers in the enzyme of Hydrogenophaga pseudoflava
    • Kang, B. S., and Y. M. Kim. 1999. Cloning and molecular characterization of the genes for carbon monoxide dehydrogenase and localization of molybdopterin, flavin adenine dinucleotide, and iron-sulfur centers in the enzyme of Hydrogenophaga pseudoflava. J. Bacteriol. 181:5581-5590.
    • (1999) J. Bacteriol. , vol.181 , pp. 5581-5590
    • Kang, B.S.1    Kim, Y.M.2
  • 10
    • 0034458215 scopus 로고    scopus 로고
    • Impacts of land use on atmospheric carbon monoxide consumption by soils
    • King, G. M. 2000. Impacts of land use on atmospheric carbon monoxide consumption by soils. Global Biogeochem. Cycles 14:1161-1172.
    • (2000) Global Biogeochem. Cycles , vol.14 , pp. 1161-1172
    • King, G.M.1
  • 11
    • 0038492780 scopus 로고    scopus 로고
    • Contributions of atmospheric CO and hydrogen uptake to microbial dynamics on recent Hawaiian volcanic deposits
    • King, G. M. 2003. Contributions of atmospheric CO and hydrogen uptake to microbial dynamics on recent Hawaiian volcanic deposits. Appl. Environ. Microbiol. 69:4067-4075.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4067-4075
    • King, G.M.1
  • 12
    • 2142693754 scopus 로고    scopus 로고
    • Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity
    • King, G. M. 2003. Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity. Appl. Environ. Microbiol. 69:7257-7265.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7257-7265
    • King, G.M.1
  • 13
    • 2142694242 scopus 로고    scopus 로고
    • Uptake of carbon monoxide and hydrogen at environmentally relevant concentrations by mycobacteria
    • King, G. M. 2003. Uptake of carbon monoxide and hydrogen at environmentally relevant concentrations by mycobacteria. Appl. Environ. Microbiol. 69:7266-7272.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7266-7272
    • King, G.M.1
  • 14
    • 0036837859 scopus 로고    scopus 로고
    • Impacts of plant roots on soil CO cycling and soil-atmosphere CO exchange
    • King, G. M., and H. Crosby. 2002. Impacts of plant roots on soil CO cycling and soil-atmosphere CO exchange. Glob. Change Biol. 8:1085-1093.
    • (2002) Glob. Change Biol. , vol.8 , pp. 1085-1093
    • King, G.M.1    Crosby, H.2
  • 15
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk, G. A., J. R. Stephen, W. De Boer, J. I. Prosser, T. Martin Embley, and J. W. Woldendorp. 1997. Analysis of ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 63:1489-1497.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    De Boer, W.3    Prosser, J.I.4    Martin Embley, T.5    Woldendorp, J.W.6
  • 16
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614-3621.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 17
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack, W., and E. Stackebrandt. 1992. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174:5072-5078.
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 18
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • Martin, A. P. 2002. Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl. Environ. Microbiol. 68:3673-3682.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 19
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig, A. E., L. A. Glover, and J. I. Prosser. 1999. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl. Environ. Microbiol. 65:1721-1730.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 20
    • 0020653833 scopus 로고
    • Biology of aerobic carbon monoxide-oxidizing bacteria
    • Meyer, O., and H. G. Schlegel. 1983. Biology of aerobic carbon monoxide-oxidizing bacteria. Annu. Rev. Microbiol. 37:277-310.
    • (1983) Annu. Rev. Microbiol. , vol.37 , pp. 277-310
    • Meyer, O.1    Schlegel, H.G.2
  • 22
    • 2942608404 scopus 로고    scopus 로고
    • Analysis of facultative lithotrophs distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase
    • Nanba, K., G. M. King, and K. Dunfield. 2004. Analysis of facultative lithotrophs distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase. Appl. Environ. Microbiol. 70:2245-2253.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2245-2253
    • Nanba, K.1    King, G.M.2    Dunfield, K.3
  • 24
    • 0342868796 scopus 로고    scopus 로고
    • Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition
    • Nüsslein, K., and J. M. Tiedje. 1998. Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition. Appl. Environ. Microbiol. 64:1283-1289.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1283-1289
    • Nüsslein, K.1    Tiedje, J.M.2
  • 25
    • 0039702585 scopus 로고    scopus 로고
    • Detection of verrucomicrobia in a pasture soil by PCR-mediated amplification of 16S rRNA genes
    • O'Farrell, K. A., and P. H. Janssen. 1999. Detection of verrucomicrobia in a pasture soil by PCR-mediated amplification of 16S rRNA genes. Appl. Environ. Microbiol. 65:4280-4284.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4280-4284
    • O'Farrell, K.A.1    Janssen, P.H.2
  • 26
    • 0031736485 scopus 로고    scopus 로고
    • Carbon monoxide oxidation by bacteria associated with the roots of freshwater macrophytes
    • Rich, J. J., and G. M. King. 1998. Carbon monoxide oxidation by bacteria associated with the roots of freshwater macrophytes. Appl. Environ. Microbiol. 64:4939-4943.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4939-4943
    • Rich, J.J.1    King, G.M.2
  • 27
    • 0033053171 scopus 로고    scopus 로고
    • Aerobic and anaerobic transformations of carbon monoxide in freshwater peats
    • Rich, J. J., and G. M. King. 1999. Aerobic and anaerobic transformations of carbon monoxide in freshwater peats. FEMS Microbiol. Ecol. 28:215-224.
    • (1999) FEMS Microbiol. Ecol. , vol.28 , pp. 215-224
    • Rich, J.J.1    King, G.M.2
  • 28
    • 0345161812 scopus 로고    scopus 로고
    • Sequence analysis, characterization and CO-specific transcription of the cox gene cluster on the megaplasmid pHCG3 of Oligotropha carboxidovorans
    • Santiago, B., U. Schubel, C. Egelseer, and O. Meyer. 1999. Sequence analysis, characterization and CO-specific transcription of the cox gene cluster on the megaplasmid pHCG3 of Oligotropha carboxidovorans. Gene 236:115-124.
    • (1999) Gene , vol.236 , pp. 115-124
    • Santiago, B.1    Schubel, U.2    Egelseer, C.3    Meyer, O.4
  • 30
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
    • Singleton, D. R., M. A. Furlong, S. L. Rathburn, and W. B. Whitman. 2001. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl. Environ. Microbiol. 67:4374-4376.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathburn, S.L.3    Whitman, W.B.4
  • 31
    • 0031904158 scopus 로고    scopus 로고
    • Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
    • Stephen, J. R., G. A. Kowalchuk, M. A. Bruns, A. E. McCaig, C. J. Phillips, T. Martin Embley, and J. I. Prosser. 1998. Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl. Environ. Microbiol. 64:2958-2965.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2958-2965
    • Stephen, J.R.1    Kowalchuk, G.A.2    Bruns, M.A.3    McCaig, A.E.4    Phillips, C.J.5    Martin Embley, T.6    Prosser, J.I.7
  • 33
    • 0036244214 scopus 로고    scopus 로고
    • Hybridization and population subdivision within and between Ross's geese and Lesser snow geese: A molecular perspective
    • Weckstein, J. D., A. D. Afton, R. M. Zink, and R. T. Alisauskas. 2002. Hybridization and population subdivision within and between Ross's geese and Lesser snow geese: a molecular perspective. Condor 104:432-436.
    • (2002) Condor , vol.104 , pp. 432-436
    • Weckstein, J.D.1    Afton, A.D.2    Zink, R.M.3    Alisauskas, R.T.4
  • 34
    • 0032703075 scopus 로고    scopus 로고
    • Methanotroph diversity in landfill soil: Isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis
    • Wise, M. G., J. V. McArthur, and L. J. Schimkets. 1999. Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis. Appl. Environ. Microbiol. 65:4887-4897.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4887-4897
    • Wise, M.G.1    McArthur, J.V.2    Schimkets, L.J.3
  • 35
    • 84890417804 scopus 로고
    • The genetic structure of populations
    • Wright, S. 1951. The genetic structure of populations. Ann. Eugenics 15: 323-354.
    • (1951) Ann. Eugenics , vol.15 , pp. 323-354
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.