메뉴 건너뛰기




Volumn 29, Issue 2, 2011, Pages 440-448

Genomic characterization of natural and somaclonal variations in bananas (Musa spp.)

Author keywords

Bananas; Candidate genes; Genome integrity; MSAP; Musa species; Somaclonal variations

Indexed keywords

MUSA;

EID: 79953023492     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-010-0250-9     Document Type: Article
Times cited : (17)

References (47)
  • 1
    • 0029073522 scopus 로고
    • A membrane-associated form of sucrose synthase and its potential role in synthesis of cellulose and callose in plants
    • Amor Y, Haigler CH, Johnson S, Wainscott M, Delmer DP (1995) A membrane-associated form of sucrose synthase and its potential role in synthesis of cellulose and callose in plants. Proc Natl Acad Sci USA 92: 9353-9357.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 9353-9357
    • Amor, Y.1    Haigler, C.H.2    Johnson, S.3    Wainscott, M.4    Delmer, D.P.5
  • 2
    • 4544289646 scopus 로고    scopus 로고
    • Using SD-AFLP and MSAP to assess CCGG Methylation in the banana genome
    • Baurens F, David B, Sandrine C, Thierry L (2003) Using SD-AFLP and MSAP to assess CCGG Methylation in the banana genome. Plant Mol Biol Rep 21: 339-348.
    • (2003) Plant Mol Biol Rep , vol.21 , pp. 339-348
    • Baurens, F.1    David, B.2    Sandrine, C.3    Thierry, L.4
  • 3
    • 20144362700 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite markers from Musa balbisiana
    • Buhariwalla HK, Jarret RL, Jayashree B, Crouch JH, Ortiz R (2005) Isolation and characterization of microsatellite markers from Musa balbisiana. Mol Ecol 5: 327-330.
    • (2005) Mol Ecol , vol.5 , pp. 327-330
    • Buhariwalla, H.K.1    Jarret, R.L.2    Jayashree, B.3    Crouch, J.H.4    Ortiz, R.5
  • 4
    • 0025718126 scopus 로고
    • Lectins, lectin genes, and their role in plant defense
    • Chrispeels MJ, Raikhel NV (1991) Lectins, lectin genes, and their role in plant defense. Plant Cell 3: 1-9.
    • (1991) Plant Cell , vol.3 , pp. 1-9
    • Chrispeels, M.J.1    Raikhel, N.V.2
  • 8
    • 0020691774 scopus 로고
    • DNA methylation and gene activity
    • Doerfler W (1983) DNA methylation and gene activity. Ann Rev Biochem 52: 93-124.
    • (1983) Ann Rev Biochem , vol.52 , pp. 93-124
    • Doerfler, W.1
  • 9
    • 0031658080 scopus 로고    scopus 로고
    • Mapping of 5-methylcytosine residues in Nicotiana tabacum 5S rRNA genes by genomic sequencing
    • Fulnecek JR, Matyasek A, Kovarik, Bezdek M (1998) Mapping of 5-methylcytosine residues in Nicotiana tabacum 5S rRNA genes by genomic sequencing. Mol Gen Genet 259: 153-141.
    • (1998) Mol Gen Genet , vol.259 , pp. 153-141
    • Fulnecek, J.R.1    Matyasek, A.2    Kovarik3    Bezdek, M.4
  • 10
    • 33645568884 scopus 로고    scopus 로고
    • SAMPL: a technique for somaclonal variation fingerprinting in Musa
    • Gimenez C, Palacios G, Colmenares M, Kahl G (2005) SAMPL: a technique for somaclonal variation fingerprinting in Musa. Plant Mol Biol Rep 23: 263-269.
    • (2005) Plant Mol Biol Rep , vol.23 , pp. 263-269
    • Gimenez, C.1    Palacios, G.2    Colmenares, M.3    Kahl, G.4
  • 11
    • 0030902720 scopus 로고    scopus 로고
    • Mutagenic and epigenetic effects of DNA methylation
    • Gonzalgo ML, Jones PA (1997) Mutagenic and epigenetic effects of DNA methylation. Mutat Res 386: 107-118.
    • (1997) Mutat Res , vol.386 , pp. 107-118
    • Gonzalgo, M.L.1    Jones, P.A.2
  • 12
    • 27944470090 scopus 로고    scopus 로고
    • Epigenetics and its implications for plant biology 1. The epigenetic network in plants
    • Grant-Downton RT, Dickinson HG (2005) Epigenetics and its implications for plant biology 1. The epigenetic network in plants. Ann Bot 96: 1143-1164.
    • (2005) Ann Bot , vol.96 , pp. 1143-1164
    • Grant-Downton, R.T.1    Dickinson, H.G.2
  • 13
    • 0019417156 scopus 로고
    • Sequence specificity of methylation in higher plant DNA
    • Gruenbaum YT, Maveh-Many CH, Razin A (1981) Sequence specificity of methylation in higher plant DNA. Nature 292: 860-862.
    • (1981) Nature , vol.292 , pp. 860-862
    • Gruenbaum, Y.T.1    Maveh-Many, C.H.2    Razin, A.3
  • 14
    • 0002455449 scopus 로고    scopus 로고
    • Chromosomal basis of somaclonal variation in plants
    • S. M. Jain (Ed.), Dordrecht: Kluwer
    • Gupta PK (1998) Chromosomal basis of somaclonal variation in plants. In: Jain SM et al (eds) Somaclonal variation and induced mutations in crop improvement. Kluwer, Dordrecht, pp 149-168.
    • (1998) Somaclonal Variation and Induced Mutations in Crop Improvement , pp. 149-168
    • Gupta, P.K.1
  • 15
    • 35348968970 scopus 로고    scopus 로고
    • Domestication, genomics and the future for Banana
    • Heslop-Harrison JS, Schwarzacher T (2007) Domestication, genomics and the future for Banana. Ann Bot 100: 1073-1084.
    • (2007) Ann Bot , vol.100 , pp. 1073-1084
    • Heslop-Harrison, J.S.1    Schwarzacher, T.2
  • 16
    • 0029738385 scopus 로고    scopus 로고
    • Methylation of coding region alone inhibits gene expression in plant protoplasts
    • Hohn TS, Corsten S, Rieke M, Muller, Rothnie H (1996) Methylation of coding region alone inhibits gene expression in plant protoplasts. Proc Natl Acad Sci USA 93: 8334-8339.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 8334-8339
    • Hohn, T.S.1    Corsten, S.2    Rieke, M.3    Muller4    Rothnie, H.5
  • 17
    • 0033832279 scopus 로고    scopus 로고
    • Epigenetic aspects of somaclonal variation in plants
    • Kaeppler S, Kaepler HF, Rhee Y (2000) Epigenetic aspects of somaclonal variation in plants. Plant Mol Biol 43: 179-188.
    • (2000) Plant Mol Biol , vol.43 , pp. 179-188
    • Kaeppler, S.1    Kaepler, H.F.2    Rhee, Y.3
  • 18
    • 33644788375 scopus 로고    scopus 로고
    • Dedifferentiation of tobacco cells is associated with ribosomal RNA gene hypomethylation, increased transcription, and chromatin alterations
    • Koukalova B, Fojtova M, Lim KY, Fulnecek J, Leitch AR, Kovarik A (2005) Dedifferentiation of tobacco cells is associated with ribosomal RNA gene hypomethylation, increased transcription, and chromatin alterations. Plant Physiol 139: 275-286.
    • (2005) Plant Physiol , vol.139 , pp. 275-286
    • Koukalova, B.1    Fojtova, M.2    Lim, K.Y.3    Fulnecek, J.4    Leitch, A.R.5    Kovarik, A.6
  • 19
    • 0038344689 scopus 로고    scopus 로고
    • Retroelements, transposons and methylation status in the genome of oil palm (Elaes guineensis) and the relationship to somaclonal variation
    • Kubis SE, Castilho AMMF, Vershinin AV, Heslop-Harrison JS (2003) Retroelements, transposons and methylation status in the genome of oil palm (Elaes guineensis) and the relationship to somaclonal variation. Plant Mol Biol 52: 69-79.
    • (2003) Plant Mol Biol , vol.52 , pp. 69-79
    • Kubis, S.E.1    Castilho, A.M.M.F.2    Vershinin, A.V.3    Heslop-Harrison, J.S.4
  • 20
    • 0242554088 scopus 로고
    • Somaclonal variation-a novel source of variability from cell cultures for plant improvement
    • Larkin PJ, Scowcroft WR (1981) Somaclonal variation-a novel source of variability from cell cultures for plant improvement. Theor Appl Genet 60: 197-214.
    • (1981) Theor Appl Genet , vol.60 , pp. 197-214
    • Larkin, P.J.1    Scowcroft, W.R.2
  • 21
    • 0037801166 scopus 로고    scopus 로고
    • Plant genomic instability detected by microsatellite-primers
    • Leroy XJ, Leon K, Branchard M (2000) Plant genomic instability detected by microsatellite-primers. Electron J Biotechnol 3: 140-148.
    • (2000) Electron J Biotechnol , vol.3 , pp. 140-148
    • Leroy, X.J.1    Leon, K.2    Branchard, M.3
  • 22
    • 0036858619 scopus 로고    scopus 로고
    • DNA methylation profiles differ between field and in vitro-grown leaves of apple
    • Li X, Xu M, Korban SS (2002) DNA methylation profiles differ between field and in vitro-grown leaves of apple. J Plant Physiol 159: 1229-1234.
    • (2002) J Plant Physiol , vol.159 , pp. 1229-1234
    • Li, X.1    Xu, M.2    Korban, S.S.3
  • 23
    • 0035839055 scopus 로고    scopus 로고
    • DNA methylation and epigenetic inheritance in plants and filamentous fungi
    • Martienssen RA, Colot V (2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science 293: 1070-1074.
    • (2001) Science , vol.293 , pp. 1070-1074
    • Martienssen, R.A.1    Colot, V.2
  • 24
    • 2442665253 scopus 로고    scopus 로고
    • Sequence motifs that distinguish ATP (CTP): tRNA nucleotidyl transferases from eubacterial poly(A) polymerases
    • Martin G, Keller W (2004) Sequence motifs that distinguish ATP (CTP): tRNA nucleotidyl transferases from eubacterial poly(A) polymerases. RNA 10: 899-906.
    • (2004) Rna , vol.10 , pp. 899-906
    • Martin, G.1    Keller, W.2
  • 25
    • 0028060576 scopus 로고
    • Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases
    • McClelland M, Nelson M, Raschke AE (1994) Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res 22: 3640-3659.
    • (1994) Nucleic Acids Res , vol.22 , pp. 3640-3659
    • McClelland, M.1    Nelson, M.2    Raschke, A.E.3
  • 26
    • 67651012308 scopus 로고    scopus 로고
    • Karyotypic and 2C nuclear DNA size instability in vitro induced off-types of East African Highland Banana (Musa AAA East Africa)
    • Msogoya T, Grout B, Roberts A (2008) Karyotypic and 2C nuclear DNA size instability in vitro induced off-types of East African Highland Banana (Musa AAA East Africa). Biotechnology (PAK) 7: 578-581.
    • (2008) Biotechnology (PAK) , vol.7 , pp. 578-581
    • Msogoya, T.1    Grout, B.2    Roberts, A.3
  • 27
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassay with tobacco tissue cultures
    • Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassay with tobacco tissue cultures. Physiol Plant 15: 473-497.
    • (1962) Physiol Plant , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 28
    • 0033780051 scopus 로고    scopus 로고
    • Natural and culture-induced genetic variation in plantains (Musa spp. AAB group)
    • Newbury HJ, Howell EC, Crouch JH, Ford-Lloyd BV (2000) Natural and culture-induced genetic variation in plantains (Musa spp. AAB group). Aust J Bot 48: 493-500.
    • (2000) Aust J Bot , vol.48 , pp. 493-500
    • Newbury, H.J.1    Howell, E.C.2    Crouch, J.H.3    Ford-Lloyd, B.V.4
  • 29
    • 34247139203 scopus 로고    scopus 로고
    • Evaluation of karyotype status of Musa L. somaclonal variants (Musaceae: Zingiberales)
    • Obute GC, Aziagba PC (2007) Evaluation of karyotype status of Musa L. somaclonal variants (Musaceae: Zingiberales). Turk J Bot 31: 143-147.
    • (2007) Turk J Bot , vol.31 , pp. 143-147
    • Obute, G.C.1    Aziagba, P.C.2
  • 33
    • 0034901448 scopus 로고    scopus 로고
    • Detection of DNA methylation changes in micropropagated banana plants using methylation-sensitive amplification polymorphism (MSAP)
    • Peraza-Echeverria S, Herrera-Valencia VA, James-Kay A (2001) Detection of DNA methylation changes in micropropagated banana plants using methylation-sensitive amplification polymorphism (MSAP). Plant Sci 161: 359-367.
    • (2001) Plant Sci , vol.161 , pp. 359-367
    • Peraza-Echeverria, S.1    Herrera-Valencia, V.A.2    James-Kay, A.3
  • 35
    • 0028360187 scopus 로고
    • Genetic instability of plant tissue cultures: breakdown of normal controls
    • Phillips RL, Kaepler S, Olhoft P (1994) Genetic instability of plant tissue cultures: breakdown of normal controls. Proc Natl Acad Sci USA 91: 5222-5226.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 5222-5226
    • Phillips, R.L.1    Kaepler, S.2    Olhoft, P.3
  • 36
    • 0030889065 scopus 로고    scopus 로고
    • Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphism
    • Reina-Lopez GE, Simpson J, Ruiz-Herrera J (1997) Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphism. Mol Gen Genet 253: 703-710.
    • (1997) Mol Gen Genet , vol.253 , pp. 703-710
    • Reina-Lopez, G.E.1    Simpson, J.2    Ruiz-Herrera, J.3
  • 37
    • 0003071177 scopus 로고
    • Gametoclonal variation detected in the nuclear ribosomal DNA from doubled haploid lines of a spring wheat (Triticum aestivum L., cv. 'César')
    • Rode A, Hartmann C, Benslimane A, Picard E, Quetier F (1987) Gametoclonal variation detected in the nuclear ribosomal DNA from doubled haploid lines of a spring wheat (Triticum aestivum L., cv. 'César'). Theor Appl Genet 74: 31-37.
    • (1987) Theor Appl Genet , vol.74 , pp. 31-37
    • Rode, A.1    Hartmann, C.2    Benslimane, A.3    Picard, E.4    Quetier, F.5
  • 38
    • 2442610818 scopus 로고    scopus 로고
    • Glycosyltransferases and cell wall biosynthesis: novel players and insights
    • Scheible WR, Pauly M (2004) Glycosyltransferases and cell wall biosynthesis: novel players and insights. Curr Opin Plant Biol 7: 285-295.
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 285-295
    • Scheible, W.R.1    Pauly, M.2
  • 39
    • 34249788337 scopus 로고    scopus 로고
    • Are there adequate methods for assessing somaclonal variation in tissue-propagated plants?
    • Smulders MJM (2005) Are there adequate methods for assessing somaclonal variation in tissue-propagated plants? Book of abstract., pp 201-203.
    • (2005) Book of Abstract , pp. 201-203
    • Smulders, M.J.M.1
  • 40
    • 0042850311 scopus 로고    scopus 로고
    • Genetic analysis of somaclonal variation among callus-derived plants of tomato
    • Soniya EV, Banerjee NS, Das MR (2001) Genetic analysis of somaclonal variation among callus-derived plants of tomato. Curr Sci 80: 1213-1215.
    • (2001) Curr Sci , vol.80 , pp. 1213-1215
    • Soniya, E.V.1    Banerjee, N.S.2    Das, M.R.3
  • 41
    • 0027306173 scopus 로고
    • Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair
    • Strand M, Prolla TA, Liskay RM, Petes TD (1993) Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 365: 274-276.
    • (1993) Nature , vol.365 , pp. 274-276
    • Strand, M.1    Prolla, T.A.2    Liskay, R.M.3    Petes, T.D.4
  • 42
    • 0345687900 scopus 로고    scopus 로고
    • Splipped-strand mispairing can function as a phase variation mechanism in Escherichia coli
    • Torres-Cruz J, Woude MW (2003) Splipped-strand mispairing can function as a phase variation mechanism in Escherichia coli. J Bacteriol 185: 6990-6994.
    • (2003) J Bacteriol , vol.185 , pp. 6990-6994
    • Torres-Cruz, J.1    Woude, M.W.2
  • 44
    • 0001858945 scopus 로고
    • Phenotypic variation among in vitro propagated plantain (Musa sp. Cultivar 'AAB')
    • Vuylsteke D, Swennen R, Wilson GF, De Langhe E (1988) Phenotypic variation among in vitro propagated plantain (Musa sp. Cultivar 'AAB'). Sci Hortic 36: 79-88.
    • (1988) Sci Hortic , vol.36 , pp. 79-88
    • Vuylsteke, D.1    Swennen, R.2    Wilson, G.F.3    de Langhe, E.4
  • 45
    • 0002412890 scopus 로고
    • Somaclonal variation in plantains (Musa spp. AAB group) derived from shoot-tip culture
    • Vuylsteke D, Swennen R, De Langhe E (1991) Somaclonal variation in plantains (Musa spp. AAB group) derived from shoot-tip culture. Fruits 46: 429-439.
    • (1991) Fruits , vol.46 , pp. 429-439
    • Vuylsteke, D.1    Swennen, R.2    de Langhe, E.3
  • 46
  • 47
    • 0030825309 scopus 로고    scopus 로고
    • COBRA: a sensitive and quantitative DNA methylation assay
    • Xiong Z, Laird PW (1997) COBRA: a sensitive and quantitative DNA methylation assay. Nucleic Acids Res 25: 2532-2534.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2532-2534
    • Xiong, Z.1    Laird, P.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.