Quantitative trait loci analysis for rice seed vigor during the germination stage

Journal of Zhejiang University: Science B

Volumn 11, Issue 12, 2010, Pages 958-964

  Wang, Zhou Fei ^a   Wang, Jian Fei ^a   Bao, Yong Mei ^a   Wang, Fu Hua ^a,b   Zhang, Hong Sheng ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Germination; Quantitative trait locus (QTL); Recombinant inbred line (RIL) population; Rice; Seed vigor

Indexed keywords

ALLELE; ARTICLE; CONTROLLED STUDY; GERMINATION; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; RECOMBINANT INBRED STRAIN; RICE; SEED DORMANCY; SEED SIZE; SEED WEIGHT; GENETICS; HETEROSIS; PHENOTYPE; SEEDLING;

JAPONICA;

GERMINATION; HYBRID VIGOR; ORYZA SATIVA; PHENOTYPE; QUANTITATIVE TRAIT LOCI; SEEDLING;

EID: 79952999591     PISSN: 16731581     EISSN: 18621783     Source Type: Journal    
DOI: 10.1631/jzus.B1000238     Document Type: Article

References (33)

1. Al-Chaarani, G.R., Gentzbittel, L., Wedzony, M., Sarrafi, A., 2005. Identification of QTLs for germination and seedling development in sunflower (Helianthus annuus L.). Plant Sci., 169(1):221-227. [doi:10.1016/j.plantsci. 2005. 03.016] (Pubitemid 40728265)
2. Bai, X., Luo, L., Yan, W., Kovi, M.R., Zhan, W., Xing, Y., 2010. Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7. BMC Genet., 11(1):16. [doi:10. 1186/1471-2156-11-16]
3. Bethke, P.C., Libourel, I.G., Aoyama, N., Chung, Y.Y., Still, D.W., Jones, R.L., 2007. The Arabidopsis aleurone layer responds to nitric oxide, gibberellin, and abscisic acid and is sufficient and necessary for seed dormancy. Plant Physiol., 143(3):1173-1188. [doi:10.1104/pp.106.093435]. (Pubitemid 46941536)
4. 2 sweet corn. J. Zhejiang Univ.-Sci. B, 9(12):964-968. [doi:10.1631/jzus. B0820084]
5. Catusse, J., Job, C., Job, D., 2008. Transcriptome- and proteomewide analyses of seed germination. C. R. Biol., 331(10): 815-822. [doi:10.1016/j.crvi.2008.07.023]
6. Churchill, G.A., Doerge, R.W., 1994. Empirical threshold values for quantitative trait mapping. Genetics, 138(3): 963-971. (Pubitemid 24337818)
7. Clerkx, E.J., El-Lithy, M.E., Vierling, E., Ruys, G.J., Blankestijn-De Vries, H., Groot, S.P., Vreugdenhil, D., Koornneef, M., 2004. Analysis of natural allelic variation of Arabidopsis seed germination and seed longevity traits between the accessions Landsberg erecta and Shakdara, using a new recombinant inbred line population. Plant Physiol., 135(1):432-443. [doi:10.1104/pp.103.036814] (Pubitemid 38653689)
8. Cui, K., Peng, S., Xing, Y., Xu, C., Yu, S., Zhang, Q., 2002. Molecular dissection of seedling-vigor and associated physiological traits in rice. Theor. Appl. Genet., 105(5): 745-753. [doi:10.1007/s00122-002-0908-2] (Pubitemid 36065032)
9. Fait, A., Angelovici, R., Less, H., Ohad, I., Urbanczyk- Wochniak, E., Fernie, A.R., Galili, G., 2006. Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol., 142(3):839-854. [doi:10.1104/pp.106.086694] (Pubitemid 44764613)
10. Foolad, M.R., Lin, G.Y., Chen, F.Q., 1999. Comparison of QTLs for seed germination under non-stress, cold stress and salt stress in tomato. Plant Breed., 118(2):167-173. [doi:10.1046/j.1439-0523.1999.118002167.x] (Pubitemid 29252939)
11. Foolad, M.R., Zhang, L.P., Subbiah, P., 2003. Genetics of drought tolerance during seed germination in tomato: Inheritance and QTL mapping. Genome, 46(4):536-545. [doi:10.1139/g03-035] (Pubitemid 37144152)
12. Foolad, M.R., Subbiah, P., Zhang, L., 2007. Common QTL affect the rate of tomato seed germination under different stress and nonstress conditions. Int. J. Plant Genomics, 2007:97386. [doi:10.1155/2007/97386]
13. Fujino, K., Sekiguchi, H., Sato, T., Kiuchi, H., Nonoue, Y., Takeuchi, Y., Ando, T., Lin, S.Y., Yano, M., 2004. Mapping of quantitative trait loci controlling lowtemperature germinability in rice (Oryza sativa L.). Theor. Appl. Genet., 108(5):794-799. [doi:10.1007/s00122-003- 1509-4] (Pubitemid 38463840)
14. Fujino, K., Sekiguchi, H., Matsuda, Y., Sugimoto, K., Ono, K., Yano, M., 2008. Molecular identification of a major quantitative trait locus, qLTG3-1, controlling lowtemperature germinability in rice. PNAS, 105(34):12623-12628. [doi:10.1073/pnas.0805303105]
15. Gu, X.Y., Kianian, S.F., Foley, M.E., 2004. Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa). Genetics, 166(3):1503-1516. [doi:10.1534/genetics.166.3.1503] (Pubitemid 38507064)
16. Hayashi, E., Aoyama, N., Still, D.W., 2008. Quantitative trait loci associated with lettuce seed germination under different temperature and light environments. Genome, 51(11):928-947. [doi:10.1139/G08-077]
17. Hund, A., Fracheboud, Y., Soldati, A., Frascaroli, E., Salvi, S., Stamp, P., 2004. QTL controlling root and shoot traits of maize seedlings under cold stress. Theor. Appl. Genet., 109(3):618-629. [doi:10.1007/s00122-004-1665-1] (Pubitemid 39138792)
18. Jiang, L., Liu, S., Hou, M., Tang, J., Chen, L., Zhai, H., Wan, J., 2006. Analysis of QTLs for seed low temperature germinability and anoxia germinability in rice (Oryza sativa L.). Field Crops Res., 98(1):68-75. [doi:10.1016/j.fcr. 2005.12.015]
19. Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., Newburg, L., 1987. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1(2):174-181. [doi:10.1016/0888-7543 (87)90010-3]
20. Li, C., Zhou, A., Sang, T., 2006. Genetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara. New Phytol., 170(1):185-194. [doi:10. 1111/j.1469-8137.2005.01647.x] (Pubitemid 43327229)
21. Li, J.X., Yu, S.B., Xu, C.G., Tan, Y.F., Gao, Y.J., Li, X.H., Zhang, Q., 2000. Analyzing quantitative trait loci for yield using a vegetatively replicated F2 population from a cross between the parents of an elite rice hybrid. Theor. Appl. Genet., 101(1-2):248-254. [doi:10.1007/s00122005 1476] (Pubitemid 30483623)
22. Mano, Y., Takeda, K., 1997. Mapping quantitative trait loci for salt tolerance at germination and the seedling stage in barley (Hordeum vulgare L.). Euphytica, 94(3):263-272. [doi:10.1023/A:1002968207362] (Pubitemid 27253231)
23. Marri, P.R., Sarla, N., Reddy, L.V., Siddiq, E.A., 2005. Identification and mapping of yield and yield related QTLs from an Indian accession of Oryza rufipogon. BMC Genet., 6(1):33. [doi:10.1186/1471-2156-6-33]
24. McCouch, S.R., Cho, Y.G., Yano, M., Paul, E., Blinstrub, M., Morishima, H., Kinoshita, T., 1997. Report on QTL nomenclature. Rice Genet. Newslett., 14:11-13.
25. McDonald, M.B., 1994. The history of seed vigor testing. J. Seed Technol., 17:93-101.
26. McKenzie, K.S., Rutger, J.N., Peterson, M.L., 1980. Relation of seedling vigor to semidwarfism, early maturity, and pubescence in closely related rice lines. Crop Sci., 20(2): 169-172. [doi:10.2135/cropsci1980.0011183X00200002 0005x]
27. McKenzie, K.S., Johnson, C.W., Tseng, S.T., Oster, J.J., Brandon, D.M., 1994. Breeding improved rice cultivars for temperate regions-a case study. Aust. J. Exp. Agric., 34(7):897-905. [doi:10.1071/EA9940897]
28. Miura, K., Lin, S., Yano, M., Nagamine, T., 2002. Mapping quantitative trait loci controlling seed longevity in rice (Oryza sativa L.). Theor. Appl. Genet., 104(6-7):981-986. [doi:10.1007/s00122-002-0872-x] (Pubitemid 36080350)
29. Moncada, P., Martinez, C.P., Borrero, J., Châtel, M., Gauch, H., Guimaraes, E.P., Tohmé, J., McCouch, S.R., 2001. Quantitative trait loci for yield and yield components in an Oryza sativa×Oryza rufipogon BC2F2 population evaluated in an upland environment. Theor. Appl. Genet., 102(1):41-52. [doi:10.1007/s001220051616] (Pubitemid 32143374)
30. Sun, Q., Wang, J.H., Sun, B.Q., 2007. Advances on seed vigor physiological and genetic mechanisms. Agric. Sci. China, 6(9):1060-1066. [doi:10.1016/S1671-2927(07)60147-3]
31. Wan, X.Y., Wan, J.M., Weng, J.F., Jiang, L., Bi, J.C., Wang, C.M., Zhai, H.Q., 2005. Stability of QTLs for rice grain dimension and endosperm chalkiness characteristics across eight environments. Theor. Appl. Genet., 110(7): 1334-1346. [doi:10.1007/s00122-005-1976-x] (Pubitemid 40689328)
32. Zhang, H.S., Hu, J., 2010. Seed Science. Science Press, Beijing, China, p.165-170 (in Chinese).
33. Zhang, Z.H., Yu, S.B., Yu, T., 2005. Mapping quantitative trait loci (QTLs) for seedling-vigor using recombinant inbred lines of rice (Oryza sativa L.). Field Crops Res., 91(2-3): 161-170. [doi:10.1016/j.fcr.2004.06.004] (Pubitemid 40033677)