Genetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara

New Phytologist

Volumn 170, Issue 1, 2006, Pages 185-194

  Li, Changbao ^a   Zhou, Ailing ^a   Sang, Tao ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

Domestication; Oryza nivara; Oryza rufipogon; Oryza sativa; Quantitative trait locus (QTL); Rice

Indexed keywords

GENETIC ANALYSIS; RICE;

ARTICLE; CHROMOSOME MAP; CROP; CROSS BREEDING; GENETIC MARKER; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; PHENOTYPE; PLANT CHROMOSOME; PLANT SEED; POACEAE; QUANTITATIVE TRAIT LOCUS; REPRODUCTION; RICE;

CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROPS, AGRICULTURAL; CROSSES, GENETIC; GENETIC MARKERS; GENOTYPE; ORYZA SATIVA; PHENOTYPE; POACEAE; QUANTITATIVE TRAIT LOCI; REPRODUCTION; SEEDS;

ORYZA NIVARA; ORYZA RUFIPOGON; ORYZA SATIVA;

EID: 33644637430     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2005.01647.x     Document Type: Article

References (42)

1. Aggarwal RK Brar DS Nandi S Huang N Khush GS 1999 Phylogenetic relationships among Oryza species revealed by AFLP markers Theoretical and Applied Genetics 98 1320 1328
2. Basten CJ Weir BS Zeng ZB 2002 QTL Cartographer 116: a reference manual and tutorial for QTL mapping Raleigh, NC, USA Department of Statistics, State University, North Carolina.
3. Beavis WD 1998 QTL analyses: Power, precision, and accuracy In Paterson AH ed Molecular dissection of complex traits Boca Raton, FL, USA CRC press 145 162
4. Burke JM Tang S Knapp SJ Rieseberg LH 2002 Genetic analysis of sunflower domestication Genetics 161 1257 1267
5. Cai HW Morishima H 2000 Genomic regions affecting seed shattering and seed dormancy in rice Theoretical Applied Genetics 100 840 846
6. Cai HW Morishima H 2002 QTL clusters reflect character associations in wild and cultivated rice Theoretical and Applied Genetics 104 1217 1228
7. Chang TT 1975 The origin, evolution, cultivation, dissemination, and diversification of the Asian and African rices Euphytica 25 425 441
8. Diamond J 2002 Evolution, consequences and future of plant and animal domestication Nature 418 700 707
9. Doebley J Stec A 1991 Genetic analysis of the morphological differences between maize and teosinte Genetics 129 285 295
10. Doebley JF Stec A Hubbard L 1997 The evolution of apical dominance in maize Nature 386 485 488
11. Doganlar S Frary A Daunay MC Lester RN Tanksley SD 2002 Conservation of gene function in the Solanaceae as revealed by comparative mapping of domestication traits in eggplant Genetics 161 1713 1726
12. Frary A Nesbitt TC Frary A Grandillo S van der Knaap E Cong B Liu JP Meller J Elber R Alpert KB Tanksley SD 2000 fw2.2: a quantitative trait locus key to the evolution of tomato fruit size Science 289 85 88
13. Ge S Sang T Lu BR Hong DY 1999 Phylogeny of rice genomes with emphasis on origins of allotetraploid species Proceedings of the National Academy of Sciences, USA 96 14400 14405
14. Goff SA Ricke D Lan TH Presting G Wang RL Dunn M Glazebrook J Sessions A Oeller P Varma H Hadley D Hutchinson D Martin C Katagiri F Lange BM Moughamer T Xia Y Budworth P Zhong JP Miguel T Paszkowski U Zhang SP Colbert M Sun WL Chen LL Cooper B Park S Wood TC Mao L Quail P Wing R Dean R Yu YS Zharkikh A Shen R Sahasrabudhe S Thomas A Cannings R Gutin A Pruss D Reid J Tavtigian S Mitchell J Eldredge G Scholl T Miller RM Bhatnagar S Adey N Rubano T Tusneem N Robinson R Feldhaus J Macalma T Oliphant A Briggs S 2002 A draft sequence of the rice genome (Oryza sativa L. ssp. Japonica) Science 296 92 100
15. Hancock JF 2004 Plant Evolution and the Origin of Crop Species 2nd edn Cambridge, MA, USA CABI Publishing.
16. Harlan JR 1975 Crops and Man Madison WI, USA American Society of Agronomy.
17. Joshi SP Gupta VS Aggarwal RK Ranjekar PK Brar DS 2000 Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza Theoretical and Applied Genetics 100 1311 1320
18. Khush GS 1997 Origin, dispersal, cultivation and variation of rice Plant Molecular Biology 35 25 34
19. Koinange EM Singh SP Gepts P 1996 Genetic control of the domestication syndrome in common bean Crop Science 36 1037 1045
20. Lu BR Song G Sang T Chen JK Hong DY 2001 The current taxonomy and perplexity of the genus Oryza (Poaceae) Acta Phytotaxonomica Sinica 39 373 388
21. Matsumoto T Wu J Kanamori H et al. 2005 The map-based sequence of the rice genome Naure 436 793 800
22. McCouch SR Teytelman L Xu YB Lobos KB Clare K Walton M Fu BY Maghirang R Li ZK Xing YZ Zhang QF Kono I Yano M Fjellstrom R DeClerck G Schneider D Cartinhour S Ware D Stein L 2002 Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) DNA Research 9 199 207
23. Oka HI 1988 Origin of Cultivated Rice Tokyo, Japan Japan Scientific Society Press.
24. Orr HA 1998 Testing natural selection vs. genetic drift in phenotypic evolution using quantitative trait locus data Genetics 149 2099 2104
25. Park KC Kim NH Cho YS Kang KH Kim NS 2003 Genetic variation of AA genome Oryza species measured by MITE-AFLP Theoretical and Applied Genetics 107 203 209
26. Paterson AH 2002 What has QTL mapping taught us about plant domestication? New Phytologist 154 591 608
27. Paterson A Lin Y Li Z Schertz K Doebley J Pinson S Liu S Stansel J Irvine J 1995 Convergent domestication of cereal crops by independent mutations at corresponding genetic loci Science 269 1714 1718
28. Peng SB Khush GS 2003 Four decades of breeding for varietal improvement of irrigated lowland rice in the international rice research institute Plant Production Science 6 157 164
29. Poncet V Lamy F Devos KM Gale MD Sarr A Robert T 2000 Genetic control of domestication traits in pearl millet (Pennisetum glaucum L., Poaceae) Theoretical and Applied Genetics 100 147 159
30. Rieseberg LH Widmer A Arntz AM Burke JM 2002 Directional selection is the primary cause of phenotypic diversification Proceedings of the National Academy of Sciences, USA 99 12242 12245
31. Sasaki A Ashikari M Ueguchi-Tanaka M Itoh H Nishimura A Swapan D Ishiyama K Saito T Kobayashi M Khush GS Kitano H Matsuoka M 2002 A mutant gibberellin-synthesis gene in rice Nature 416 701 702
32. Seshu DV Sorrells ME 1986 Genetic studies on seed dormancy in rice In Rice genetics pp 369 382 Manila, Philippines IRRI 369 382
33. Sharma SD Tripathy S Biswal J 2000 Origin of O. sativa and its ecotypes In Nanda JS ed Rice breeding and genetics: research priorities and challenges Enfield, NH, USA Science Publications pp 349 369
34. Simpson GM 1990 Seed dormancy in grass Cambridge, UK Cambridge University Press.
35. Tanksley SD McCouch SR 1997 Seed banks and molecular maps: Unlocking genetic potential from the wild Science 277 1063 1066
36. Temnykh S DeClearck G Lukashova A Lipovich L Cartinhour S McCouch S 2001 Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon association, and genetic marker potential Genome Research 11 1441 1452
37. Vaughan DA 1989 The genus Oryza LCurrent status of taxonomy Manila, Philippines: IRRI Research Paper Series 138
38. Vaughan DA 1994 The wild relatives of rice: a genetic resources handbook
39. Xiao J Li J Grandillo S Ahn SN Yuan LP Tanksley SD McCouch SR 1998 Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon Genetics 150 899 909
40. 2 population of a cross between Oryza sativa and O. rufipogon Theoretical and Applied Genetics 98 243 251
41. Yu J Hu S Wang J Wong GKS Li SG Liu B Deng YJ Dai L Zhou Y Zhang XQ Cao ML Liu J Sun JD Tang JB Chen YJ Huang XB Lin W Ye C Tong W Cong LJ Geng JN Han YJ Li L Li W Hu GQ Huang XG Li WJ Li J Liu ZW Li L Liu JP Qi QH Liu JS Li L Li T Wang XG Lu H Wu TT Zhu M Ni PX Han H Dong W Ren XY Feng XL Cui P Li XR Wang H Xu X Zhai WX Xu Z Zhang JS He SJ Zhang JG Xu JC Zhang KL Zheng XW Dong JH Zeng WY Tao L Ye J Tan J Ren XD Chen XW He J Liu DF Tian W Tian CG Xia HG Bao QY Li G Gao H Cao T Wang J Zhao WM Li P Chen W Wang XD Zhang Y Hu JF Wang J Liu S Yang J Zhang GY Xiong YQ Li ZJ Mao L Zhou CS Zhu Z Chen RS Hao BL Zheng WM Chen SY Guo W Li GJ Liu SQ Tao M Wang J Zhu LH Yuan LP Yang HM 2002 A draft sequence of the rice genome (Oryza sativa L. ssp. Indica) Science 296 79 92
42. Zhu QH Ge S 2005 Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes New Phytologist 167 249 265