-
1
-
-
47949089607
-
Acinetobacter baumannii: emergence of a successful pathogen
-
Peleg A.Y., Seifert H., Paterson D.L. Acinetobacter baumannii: emergence of a successful pathogen. Clin. Microbiol. Rev. 2008, 21:538-582.
-
(2008)
Clin. Microbiol. Rev.
, vol.21
, pp. 538-582
-
-
Peleg, A.Y.1
Seifert, H.2
Paterson, D.L.3
-
2
-
-
70350482646
-
Severe community-acquired Acinetobacter baumannii pneumonia: an emerging highly lethal infectious disease in the Asia-Pacific
-
Ong C.W., et al. Severe community-acquired Acinetobacter baumannii pneumonia: an emerging highly lethal infectious disease in the Asia-Pacific. Respirology 2009, 14:1200-1205.
-
(2009)
Respirology
, vol.14
, pp. 1200-1205
-
-
Ong, C.W.1
-
3
-
-
70350520559
-
Community-acquired Acinetobacter baumannii meningitis in a previously healthy 14-month-old boy
-
Ozaki T., et al. Community-acquired Acinetobacter baumannii meningitis in a previously healthy 14-month-old boy. J. Infect. Chemother. 2009, 15:322-324.
-
(2009)
J. Infect. Chemother.
, vol.15
, pp. 322-324
-
-
Ozaki, T.1
-
4
-
-
34948861645
-
Global challenge of multidrug-resistant Acinetobacter baumannii
-
Perez F., et al. Global challenge of multidrug-resistant Acinetobacter baumannii. Antimicrob. Agents Chemother. 2007, 51:3471-3484.
-
(2007)
Antimicrob. Agents Chemother.
, vol.51
, pp. 3471-3484
-
-
Perez, F.1
-
5
-
-
42449114356
-
Emergence and spread of carbapenem-resistant Acinetobacter baumannii in a tertiary care hospital in Turkey
-
Meric M., et al. Emergence and spread of carbapenem-resistant Acinetobacter baumannii in a tertiary care hospital in Turkey. FEMS Microbiol. Lett. 2008, 282:214-218.
-
(2008)
FEMS Microbiol. Lett.
, vol.282
, pp. 214-218
-
-
Meric, M.1
-
6
-
-
77954888053
-
Multiresistant Acinetobacter baumannii infections: epidemiology and management
-
Garnacho-Montero J., Amaya-Villar R. Multiresistant Acinetobacter baumannii infections: epidemiology and management. Curr. Opin. Infect. Dis. 2010, 23:332-339.
-
(2010)
Curr. Opin. Infect. Dis.
, vol.23
, pp. 332-339
-
-
Garnacho-Montero, J.1
Amaya-Villar, R.2
-
7
-
-
77954888053
-
Multiresistant Acinetobacter baumannii infections: epidemiology and management
-
Garnacho-Montero J., Amaya-Villar R. Multiresistant Acinetobacter baumannii infections: epidemiology and management. Curr. Opin. Infect. Dis. 2010, 23:332-339.
-
(2010)
Curr. Opin. Infect. Dis.
, vol.23
, pp. 332-339
-
-
Garnacho-Montero, J.1
Amaya-Villar, R.2
-
8
-
-
77953734201
-
Treatment of Acinetobacter infections
-
Fishbain J., Peleg A.Y. Treatment of Acinetobacter infections. Clin. Infect. Dis. 2010, 51:79-84.
-
(2010)
Clin. Infect. Dis.
, vol.51
, pp. 79-84
-
-
Fishbain, J.1
Peleg, A.Y.2
-
10
-
-
21844447568
-
The third age of phage
-
Mann N.H. The third age of phage. PLoS Biol. 2005, 3:e182.
-
(2005)
PLoS Biol.
, vol.3
-
-
Mann, N.H.1
-
11
-
-
79952799914
-
-
Phage list in Entrenz Genome http://www.ncbi.nlm.nih.gov/genomes/genlist.cgi?taxid=10239&type=6&name=Phages.
-
Phage list in Entrenz Genome
-
-
-
12
-
-
77951568204
-
Isolation and characterization of a virulent bacteriophage AB1 of Acinetobacter baumannii
-
Yang H., Liang L., Lin S., Jia S. Isolation and characterization of a virulent bacteriophage AB1 of Acinetobacter baumannii. BMC Microbiol. 2010, 10:131.
-
(2010)
BMC Microbiol.
, vol.10
, pp. 131
-
-
Yang, H.1
Liang, L.2
Lin, S.3
Jia, S.4
-
13
-
-
77953541325
-
Isolation and characterization of phiAB2, a novel bacteriophage of Acinetobacter baumannii
-
Lin N.T., Chiou P.Y., Chang K.C., Chen L.K., Lai M.J. Isolation and characterization of phiAB2, a novel bacteriophage of Acinetobacter baumannii. Res. Microbiol. 2010, 161(4):308-314.
-
(2010)
Res. Microbiol.
, vol.161
, Issue.4
, pp. 308-314
-
-
Lin, N.T.1
Chiou, P.Y.2
Chang, K.C.3
Chen, L.K.4
Lai, M.J.5
-
14
-
-
33749349217
-
Genomic analysis of Pseudomonas aeruginosa phages LKD16 and LKA1: establishment of the phiKMV subgroup within the T7 supergroup
-
Ceyssens P.J., et al. Genomic analysis of Pseudomonas aeruginosa phages LKD16 and LKA1: establishment of the phiKMV subgroup within the T7 supergroup. J. Bacteriol. 2006, 188:6924-6931.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 6924-6931
-
-
Ceyssens, P.J.1
-
15
-
-
0043169693
-
The genome of bacteriophage phiKMV, a T7-like virus infecting Pseudomonas aeruginosa
-
Lavigne R., et al. The genome of bacteriophage phiKMV, a T7-like virus infecting Pseudomonas aeruginosa. Virology 2003, 312:49-59.
-
(2003)
Virology
, vol.312
, pp. 49-59
-
-
Lavigne, R.1
-
17
-
-
0342980358
-
Biochemical and genetic evidence for three transmembrane domains in the class I holin, lambda S
-
Grundling A., Blasi U., Young R. Biochemical and genetic evidence for three transmembrane domains in the class I holin, lambda S. J. Biol. Chem. 2000, 275:769-776.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 769-776
-
-
Grundling, A.1
Blasi, U.2
Young, R.3
-
18
-
-
32244433585
-
The structural proteome of Pseudomonas aeruginosa bacteriophage phiKMV
-
Lavigne R., et al. The structural proteome of Pseudomonas aeruginosa bacteriophage phiKMV. Microbiology 2006, 152:529-534.
-
(2006)
Microbiology
, vol.152
, pp. 529-534
-
-
Lavigne, R.1
-
19
-
-
0034740227
-
Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome
-
Reese M.G. Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome. Comput. Chem. 2001, 26:51-56.
-
(2001)
Comput. Chem.
, vol.26
, pp. 51-56
-
-
Reese, M.G.1
-
20
-
-
24944544413
-
Characterization of the bacteriophage PhiKMV DNA ligase
-
Lavigne R., Roucourt B., Hertveldt K., Volckaert G. Characterization of the bacteriophage PhiKMV DNA ligase. Protein Pept. Lett. 2005, 12:645-648.
-
(2005)
Protein Pept. Lett.
, vol.12
, pp. 645-648
-
-
Lavigne, R.1
Roucourt, B.2
Hertveldt, K.3
Volckaert, G.4
-
21
-
-
33644756595
-
Homing endonuclease structure and function
-
Stoddard B.L. Homing endonuclease structure and function. Q. Rev. Biophys. 2005, 38:49-95.
-
(2005)
Q. Rev. Biophys.
, vol.38
, pp. 49-95
-
-
Stoddard, B.L.1
-
22
-
-
0033567272
-
Homing endonucleases: structure, function and evolution
-
Jurica M.S., Stoddard B.L. Homing endonucleases: structure, function and evolution. Cell. Mol. Life Sci. 1999, 55:1304-1326.
-
(1999)
Cell. Mol. Life Sci.
, vol.55
, pp. 1304-1326
-
-
Jurica, M.S.1
Stoddard, B.L.2
-
23
-
-
79952802176
-
HNHDb: a database on pattern based classification of HNH domains reveals functional relevance of sequence patterns and domain associations
-
Veluchamy A., et al. HNHDb: a database on pattern based classification of HNH domains reveals functional relevance of sequence patterns and domain associations. Bioinformation 2009, 4:80-83.
-
(2009)
Bioinformation
, vol.4
, pp. 80-83
-
-
Veluchamy, A.1
-
24
-
-
0642367806
-
New types of conserved sequence domains in DNA-binding regions of homing endonucleases
-
Sitbon E., Pietrokovski S. New types of conserved sequence domains in DNA-binding regions of homing endonucleases. Trends Biochem. Sci. 2003, 28:473-477.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 473-477
-
-
Sitbon, E.1
Pietrokovski, S.2
-
25
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov E.M., Apweiler R. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001, 17:847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
26
-
-
13444262384
-
CDD: a Conserved Domain Database for protein classification
-
Marchler-Bauer A., et al. CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res. 2005, 33:D192-D196.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Marchler-Bauer, A.1
-
27
-
-
0030986363
-
The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis
-
Okamuro J.K., Caster B., Villarroel R., Van Montagu M., Jofuku K.D. The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. Proc. Natl Acad. Sci. USA 1997, 94:7076-7081.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 7076-7081
-
-
Okamuro, J.K.1
Caster, B.2
Villarroel, R.3
Van Montagu, M.4
Jofuku, K.D.5
-
28
-
-
41149113468
-
Comparison of genomes of three Xanthomonas oryzae bacteriophages
-
Lee C.N., et al. Comparison of genomes of three Xanthomonas oryzae bacteriophages. BMC Genomics 2007, 8:442.
-
(2007)
BMC Genomics
, vol.8
, pp. 442
-
-
Lee, C.N.1
-
29
-
-
13044290052
-
The enzymological basis for resistance of herpesvirus DNA polymerase mutants to acyclovir: relationship to the structure of alpha-like DNA polymerases
-
Huang L., et al. The enzymological basis for resistance of herpesvirus DNA polymerase mutants to acyclovir: relationship to the structure of alpha-like DNA polymerases. Proc. Natl Acad. Sci. USA 1999, 96:447-452.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 447-452
-
-
Huang, L.1
-
30
-
-
0033214481
-
Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum deltaH
-
Kelman Z., Pietrokovski S., Hurwitz J. Isolation and characterization of a split B-type DNA polymerase from the archaeon Methanobacterium thermoautotrophicum deltaH. J. Biol. Chem. 1999, 274:28751-28761.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 28751-28761
-
-
Kelman, Z.1
Pietrokovski, S.2
Hurwitz, J.3
-
31
-
-
15644383855
-
Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics
-
Smith D.R., et al. Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics. J. Bacteriol. 1997, 179:7135-7155.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7135-7155
-
-
Smith, D.R.1
-
32
-
-
0032483013
-
Protein trans-splicing by a split intein encoded in a split DnaE gene of Synechocystis sp. PCC6803
-
Wu H., Hu Z., Liu X.Q. Protein trans-splicing by a split intein encoded in a split DnaE gene of Synechocystis sp. PCC6803. Proc. Natl Acad. Sci. USA 1998, 95:9226-9231.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 9226-9231
-
-
Wu, H.1
Hu, Z.2
Liu, X.Q.3
-
33
-
-
11144247774
-
Diversity of structure and function of DNA polymerase (gp43) of T4-related bacteriophages
-
Petrov V.M., Karam J.D. Diversity of structure and function of DNA polymerase (gp43) of T4-related bacteriophages. Biochemistry (Mosc.) 2004, 69:1213-1218.
-
(2004)
Biochemistry (Mosc.)
, vol.69
, pp. 1213-1218
-
-
Petrov, V.M.1
Karam, J.D.2
-
34
-
-
34347377028
-
Insertion of a homing endonuclease creates a genes-in-pieces ribonucleotide reductase that retains function
-
Friedrich N.C., et al. Insertion of a homing endonuclease creates a genes-in-pieces ribonucleotide reductase that retains function. Proc. Natl Acad. Sci. USA 2007, 104:6176-6181.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 6176-6181
-
-
Friedrich, N.C.1
-
35
-
-
22144453870
-
Functional analysis of the lysis genes of Staphylococcus aureus phage P68 in Escherichia coli
-
Takac M., Witte A., Blasi U. Functional analysis of the lysis genes of Staphylococcus aureus phage P68 in Escherichia coli. Microbiology 2005, 151:2331-2342.
-
(2005)
Microbiology
, vol.151
, pp. 2331-2342
-
-
Takac, M.1
Witte, A.2
Blasi, U.3
-
36
-
-
0026800935
-
Bacteriophage lysis: mechanism and regulation
-
Young R. Bacteriophage lysis: mechanism and regulation. Microbiol. Rev. 1992, 56:430-481.
-
(1992)
Microbiol. Rev.
, vol.56
, pp. 430-481
-
-
Young, R.1
-
37
-
-
22544440575
-
The Holin protein of bacteriophage PRD1 forms a pore for small-molecule and endolysin translocation
-
Ziedaite G., Daugelavicius R., Bamford J.K., Bamford D.H. The Holin protein of bacteriophage PRD1 forms a pore for small-molecule and endolysin translocation. J. Bacteriol. 2005, 187:5397-5405.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 5397-5405
-
-
Ziedaite, G.1
Daugelavicius, R.2
Bamford, J.K.3
Bamford, D.H.4
-
38
-
-
35048873167
-
Rz/Rz1 lysis gene equivalents in phages of Gram-negative hosts
-
Summer E.J., et al. Rz/Rz1 lysis gene equivalents in phages of Gram-negative hosts. J. Mol. Biol. 2007, 373:1098-1112.
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 1098-1112
-
-
Summer, E.J.1
-
39
-
-
0033768655
-
Holins: the protein clocks of bacteriophage infections
-
Wang I.N., Smith D.L., Young R. Holins: the protein clocks of bacteriophage infections. Annu. Rev. Microbiol. 2000, 54:799-825.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 799-825
-
-
Wang, I.N.1
Smith, D.L.2
Young, R.3
-
40
-
-
75549090603
-
The Pfam protein families database
-
Finn R.D., et al. The Pfam protein families database. Nucleic Acids Res. 2010, 38:D211-D222.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
-
41
-
-
22544471225
-
Bacteriophage endolysins-current state of research and applications
-
Loessner M.J. Bacteriophage endolysins-current state of research and applications. Curr. Opin. Microbiol. 2005, 8:480-487.
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 480-487
-
-
Loessner, M.J.1
-
42
-
-
0024278076
-
Dominance in lambda S mutations and evidence for translational control
-
Raab R., Neal G., Sohaskey C., Smith J., Young R. Dominance in lambda S mutations and evidence for translational control. J. Mol. Biol. 1988, 199:95-105.
-
(1988)
J. Mol. Biol.
, vol.199
, pp. 95-105
-
-
Raab, R.1
Neal, G.2
Sohaskey, C.3
Smith, J.4
Young, R.5
-
43
-
-
0022534711
-
Mutational analysis of bacteriophage lambda lysis gene S
-
Raab R., et al. Mutational analysis of bacteriophage lambda lysis gene S. J. Bacteriol. 1986, 167:1035-1042.
-
(1986)
J. Bacteriol.
, vol.167
, pp. 1035-1042
-
-
Raab, R.1
-
44
-
-
0025317560
-
The lethal lambda S gene encodes its own inhibitor
-
Blasi U., Chang C.Y., Zagotta M.T., Nam K.B., Young R. The lethal lambda S gene encodes its own inhibitor. EMBO J. 1990, 9:981-989.
-
(1990)
EMBO J.
, vol.9
, pp. 981-989
-
-
Blasi, U.1
Chang, C.Y.2
Zagotta, M.T.3
Nam, K.B.4
Young, R.5
-
45
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B., Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8:186-194.
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
46
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B., Hillier L., Wendl M.C., Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8:175-185.
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
47
-
-
0031955116
-
Consed: a graphical tool for sequence finishing
-
Gordon D., Abajian C., Green P. Consed: a graphical tool for sequence finishing. Genome Res. 1998, 8:195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
48
-
-
0032519353
-
GeneMark.hmm: new solutions for gene finding
-
Lukashin A.V., Borodovsky M. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 1998, 26:1107-1115.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
49
-
-
48449090786
-
NCBI BLAST: a better web interface
-
Johnson M., et al. NCBI BLAST: a better web interface. Nucleic Acids Res. 2008, 36:W5-W9.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Johnson, M.1
-
50
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
-
Krogh A., Larsson B., von Heijne G., Sonnhammer E.L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305:567-580.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
51
-
-
1842559901
-
PHIRE, a deterministic approach to reveal regulatory elements in bacteriophage genomes
-
Lavigne R., Sun W.D., Volckaert G. PHIRE, a deterministic approach to reveal regulatory elements in bacteriophage genomes. Bioinformatics 2004, 20:629-635.
-
(2004)
Bioinformatics
, vol.20
, pp. 629-635
-
-
Lavigne, R.1
Sun, W.D.2
Volckaert, G.3
-
52
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zuker M. On finding all suboptimal foldings of an RNA molecule. Science 1989, 244:48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
53
-
-
33747829924
-
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
-
Armougom F., et al. Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. Nucleic Acids Res. 2006, 34:W604-W608.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Armougom, F.1
-
54
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse A.M., Procter J.B., Martin D.M., Clamp M., Barton G.J. Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009, 25:1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
55
-
-
0003437299
-
-
Department of Genome Sciences, University of Washington, Seattle
-
Felsenstein J. PHYLIP (Phylogeny Inference Package) Version 3.69, in, Distributed by the author 2005, Department of Genome Sciences, University of Washington, Seattle.
-
(2005)
PHYLIP (Phylogeny Inference Package) Version 3.69, in, Distributed by the author
-
-
Felsenstein, J.1
-
56
-
-
23144433822
-
PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference
-
Guindon S., Lethiec F., Duroux P., Gascuel O. PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 2005, 33:W557-W559.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Guindon, S.1
Lethiec, F.2
Duroux, P.3
Gascuel, O.4
-
57
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng J.K., McCormack A.L., Yates J.R. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5:976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
|