-
1
-
-
0032167569
-
Distinct frequency-distributions of homopolymeric DNA tracts in different genomes
-
Dechering, K. J., Cuelenaere, K., Konings, R. N. H., and Leunissen, J. A. M. (1998) Distinct frequency-distributions of homopolymeric DNA tracts in different genomes Nucleic Acids Res. 26, 4056-4062 (Pubitemid 28401361)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.17
, pp. 4056-4062
-
-
Dechering, K.J.1
Cuelenaere, K.2
Konings, R.N.H.3
Leunissen, J.A.M.4
-
2
-
-
67649710352
-
The unique structure of A-tracts and intrinsic DNA bending
-
Haran, T. E. and Mohanty, U. (2009) The unique structure of A-tracts and intrinsic DNA bending Q. Rev. Biophys. 42, 41-81
-
(2009)
Q. Rev. Biophys.
, vol.42
, pp. 41-81
-
-
Haran, T.E.1
Mohanty, U.2
-
3
-
-
60349115060
-
Poly(dA:dT) tracts: Major determinants of nucleosome organization
-
Segal, E. and Widom, J. (2009) Poly(dA:dT) tracts: major determinants of nucleosome organization Curr. Opin. Struct. Biol. 19, 65-71
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 65-71
-
-
Segal, E.1
Widom, J.2
-
4
-
-
0024285807
-
Evidence from base-pair kinetics for two types of adenine tract structures in solution: Their relation to DNA curvature
-
Leroy, J. L., Charretier, E., Kochoyan, M., and Gueron, M. (1988) Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature Biochemistry 27, 8894-8898
-
(1988)
Biochemistry
, vol.27
, pp. 8894-8898
-
-
Leroy, J.L.1
Charretier, E.2
Kochoyan, M.3
Gueron, M.4
-
5
-
-
0025194337
-
Proton exchange and base pair opening kinetics in 5′- d(CGCGAATTCGCG)-3′ and related dodecamers
-
Moe, J. G. and Russu, I. M. (1990) Proton exchange and base pair opening kinetics in 5′-d(CGCGAATTCGCG)-3′ and related dodecamers Nucleic Acids Res. 18, 821-827
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 821-827
-
-
Moe, J.G.1
Russu, I.M.2
-
7
-
-
0019331859
-
RNA-DNA hybrid duplexes containing oligo (dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription
-
Martin, F. H. and Tinoco, I. J. (1980) RNA-DNA hybrid duplexes containing oligo (dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription Nucleic Acids Res. 8, 2295-2299
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 2295-2299
-
-
Martin, F.H.1
Tinoco, I.J.2
-
8
-
-
77649339290
-
Structural energetics of the adenine tract from an intrinsic transcription terminator
-
Huang, Y., Weng, X., and Russu, I. M. (2010) Structural energetics of the adenine tract from an intrinsic transcription terminator J. Mol. Biol. 397, 677-688
-
(2010)
J. Mol. Biol.
, vol.397
, pp. 677-688
-
-
Huang, Y.1
Weng, X.2
Russu, I.M.3
-
9
-
-
16644365966
-
Sequence-dependence of the energetics of opening of at base pairs in DNA
-
Chen, C. and Russu, I. M. (2004) Sequence-dependence of the energetics of opening of AT base pairs in DNA Biophys. J. 87, 1-7
-
(2004)
Biophys. J.
, vol.87
, pp. 1-7
-
-
Chen, C.1
Russu, I.M.2
-
10
-
-
33845555707
-
Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences
-
Plateau, P. and Gueron, M. (1982) Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences J. Am. Chem. Soc. 104, 7310-7311
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 7310-7311
-
-
Plateau, P.1
Gueron, M.2
-
11
-
-
0029338320
-
Improved sensitivity of HSQC spectra of exchanging protons at short interscan delays using a new fast HSQC(FHSQC) detection scheme that avoids water saturation
-
Mori, S., Abeygunawardana, C., Johnson, M. O., and van Zijl, P. C. M. (1995) Improved sensitivity of HSQC spectra of exchanging protons at short interscan delays using a new fast HSQC(FHSQC) detection scheme that avoids water saturation J. Magn. Reson. B 108, 94-98
-
(1995)
J. Magn. Reson. B
, vol.108
, pp. 94-98
-
-
Mori, S.1
Abeygunawardana, C.2
Johnson, M.O.3
Van Zijl, P.C.M.4
-
12
-
-
0000389264
-
Use of a water flip-back pulse in the homonuclear NOESY experiment
-
Lippens, G., Dhalluin, C., and Wieruszeski, J.-M. (1995) Use of a water flip-back pulse in the homonuclear NOESY experiment J. Biomol. NMR 5, 327-331
-
(1995)
J. Biomol. NMR
, vol.5
, pp. 327-331
-
-
Lippens, G.1
Dhalluin, C.2
Wieruszeski, J.-M.3
-
13
-
-
1542269098
-
Probing Site-Specific Energetics in Proteins and Nucleic Acids by Hydrogen Exchange and Nuclear Magnetic Resonance Spectroscopy
-
DOI 10.1016/S0076-6879(04)79009-6
-
Russu, I. M. (2004) Probing site-specific energetics in proteins and nucleic acids by hydrogen exchange and NMR spectroscopy Methods Enzymol. 379, 152-175 (Pubitemid 38313471)
-
(2004)
Methods in Enzymology
, vol.379
, pp. 152-175
-
-
Russu, I.M.1
-
14
-
-
0020855355
-
Hydrogen exchange and structural dynamics of proteins and nucleic acids
-
Englander, S. W. and Kallenbach, N. R. (1984) Hydrogen exchange and structural dynamics of proteins and nucleic acids Q. Rev. Biophys. 16, 521-655
-
(1984)
Q. Rev. Biophys.
, vol.16
, pp. 521-655
-
-
Englander, S.W.1
Kallenbach, N.R.2
-
15
-
-
0028864424
-
Studies of base pair kinetics by NMR measurement of proton exchange
-
Gueron, M. and Leroy, J.-L. (1995) Studies of base pair kinetics by NMR measurement of proton exchange Methods Enzymol. 261, 383-413
-
(1995)
Methods Enzymol.
, vol.261
, pp. 383-413
-
-
Gueron, M.1
Leroy, J.-L.2
-
16
-
-
66149094661
-
Dynamics and stability of individual base pairs in two homologous RNA-DNA hybrids
-
Huang, Y., Chen, C., and Russu, I. M. (2009) Dynamics and stability of individual base pairs in two homologous RNA-DNA hybrids Biochemistry 48, 3988-3997
-
(2009)
Biochemistry
, vol.48
, pp. 3988-3997
-
-
Huang, Y.1
Chen, C.2
Russu, I.M.3
-
18
-
-
0026737976
-
Kinetics and energetics of base-pair opening in 5′-d(CGCGAATTCGCG)- 3′ and a substituted dodecamer containing G•T mismatches
-
Moe, J. G. and Russu, I. M. (1992) Kinetics and energetics of base-pair opening in 5′-d(CGCGAATTCGCG)-3′ and a substituted dodecamer containing G•T mismatches Biochemistry 31, 8421-8428
-
(1992)
Biochemistry
, vol.31
, pp. 8421-8428
-
-
Moe, J.G.1
Russu, I.M.2
-
19
-
-
0040184162
-
Imino proton exchange in DNA catalyzed by ammonia and trimethylamine: Evidence for a secondary long-lived open state of the base pair
-
DOI 10.1021/bi991863b
-
Warmlander, S., Sen, A., and Leijon, M. (2000) Imino proton exchange in DNA catalyzed by ammonia and trimethylamine: evidence for a secondary long-lived open state of the base pair Biochemistry 39, 607-615 (Pubitemid 30077635)
-
(2000)
Biochemistry
, vol.39
, Issue.3
, pp. 607-615
-
-
Warmlander, S.1
Sen, A.2
Leijon, M.3
-
20
-
-
0035979354
-
Imino proton exchange and base-pair kinetics in RNA duplexes
-
DOI 10.1021/bi010385d
-
Snoussi, K. and Leroy, J.-L. (2001) Imino proton exchange and base-pair kinetics in RNA duplexes Biochemistry 40, 8898-8904 (Pubitemid 32709523)
-
(2001)
Biochemistry
, vol.40
, Issue.30
, pp. 8898-8904
-
-
Snoussi, K.1
Leroy, J.-L.2
-
21
-
-
0037178070
-
Base flipping in DNA: Pathways and energetics studied with molecular dynamic simulations
-
DOI 10.1021/ja025980x
-
Varnai, P. and Lavery, R. (2002) Base flipping in DNA: pathways and energetics studied with molecular dynamics simulations J. Am. Chem. Soc. 124, 7272-7273 (Pubitemid 34670427)
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.25
, pp. 7272-7273
-
-
Varnai, P.1
Lavery, R.2
-
22
-
-
0037335588
-
Base pair opening within B-DNA: Free energy pathways for GC and AT pairs from umbrella sampling simulations
-
DOI 10.1093/nar/gkg239
-
Giudice, E., Varnai, P., and Lavery, R. (2003) Base pair opening within B-DNA: free energy pathways for GC and AT base pairs from umbrella sampling simulations Nucleic Acids Res. 31, 1434-1443 (Pubitemid 36304905)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.5
, pp. 1434-1443
-
-
Giudice, E.1
Varnai, P.2
Lavery, R.3
-
23
-
-
33644622321
-
Computational approaches for investigating base flipping in oligonucleotides
-
Priyakumar, U. D. and MacKerell, A. D., Jr. (2006) Computational approaches for investigating base flipping in oligonucleotides Chem. Rev. 106, 489-505
-
(2006)
Chem. Rev.
, vol.106
, pp. 489-505
-
-
Priyakumar, U.D.1
Mackerell Jr., A.D.2
-
24
-
-
0023513912
-
The structure of an oligo(dA)·oligo(dT) tract and its biological implications
-
DOI 10.1038/330221a0
-
Nelson, H. C. M., Finch, J. T., Luisi, B. F., and Klug, A. (1987) The structure of an oligo(dA)•oligo(dT) tract and its biological implications Nature 330, 221-226 (Pubitemid 18006417)
-
(1987)
Nature
, vol.330
, Issue.6145
, pp. 221-226
-
-
Nelson, H.C.M.1
Finch, J.T.2
Luisi, B.F.3
Klug, A.4
-
25
-
-
0027203669
-
A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend
-
DOI 10.1006/jmbi.1993.1349
-
DiGabriele, A. D. and Steitz, T. A. (1993) A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend J. Mol. Biol. 231, 1024-1039 (Pubitemid 23209877)
-
(1993)
Journal of Molecular Biology
, vol.231
, Issue.4
, pp. 1024-1039
-
-
DiGabriele, A.D.1
Steitz, T.A.2
-
26
-
-
0035830968
-
Solution structure of an A-tract DNA bend
-
DOI 10.1006/jmbi.2001.4447
-
MacDonald, D., K., H., Zhang, X., Polgruto, T., and Lu, P. (2001) Solution structure of an A-tract DNA bend J. Mol. Biol. 306, 1081-1098 (Pubitemid 33030006)
-
(2001)
Journal of Molecular Biology
, vol.306
, Issue.5
, pp. 1081-1098
-
-
MacDonald, D.1
Herbert, K.2
Zhang, X.3
Polgruto, T.4
Lu, P.5
-
27
-
-
9644302286
-
2
-
2 J. Am. Chem. Soc. 126, 15330-15331 (Pubitemid 39577438)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.47
, pp. 15330-15331
-
-
Woods, K.K.1
Maehigashi, T.2
Howerton, S.B.3
Sines, C.C.4
Tannenbaum, S.5
Williams, L.D.6
-
28
-
-
0023494886
-
A bifurcated hydrogen-bonded conformation in the d(A•T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin
-
Coll, M., Frederick, C. A., Wang, A. H.-J., and Rich, A. (1987) A bifurcated hydrogen-bonded conformation in the d(A•T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin Proc. Natl. Acad. Sci. U.S.A. 84, 8385-8389
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 8385-8389
-
-
Coll, M.1
Frederick, C.A.2
Wang, A.H.-J.3
Rich, A.4
-
29
-
-
0028904989
-
Origins of the large differences in stability of DNA and RNA helices: C-5 methyl and 2′-hydroxyl effects
-
Wang, S. and Kool, E. T. (1995) Origins of the large differences in stability of DNA and RNA helices: C-5 methyl and 2′-hydroxyl effects Biochemistry 34, 4125-4132
-
(1995)
Biochemistry
, vol.34
, pp. 4125-4132
-
-
Wang, S.1
Kool, E.T.2
-
30
-
-
0037047422
-
The influence of the thymine C5 methyl group on spontaneous base pair breathing in DNA
-
DOI 10.1074/jbc.M202989200
-
Warmlander, S., Sponer, J. E., Sponer, J., and Leijon, M. (2002) The influence of the thymine C5 methyl group on spontaneous base pair breathing in DNA J. Biol. Chem. 277, 28491-28497 (Pubitemid 41079274)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.32
, pp. 28491-28497
-
-
Warmlander, S.1
Sponer, J.E.2
Sponer, J.3
Leijoni, M.4
-
31
-
-
77953293106
-
A′-form RNA helices are required for cytoplasmic mRNA transport in Drosophila
-
Bullock, S. L., Ringel, I., Ish-Horowicz, D., and Lukavsky, P. J. (2010) A′-form RNA helices are required for cytoplasmic mRNA transport in Drosophila Nat. Struct. Mol. Biol. 17, 703-710
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 703-710
-
-
Bullock, S.L.1
Ringel, I.2
Ish-Horowicz, D.3
Lukavsky, P.J.4
-
32
-
-
0015525307
-
Optimised parameters for RNA double-helices
-
Arnott, S., Hukins, D. W., and Dover, S. D. (1972) Optimised parameters for RNA double-helices Biochem. Biophys. Res. Commun. 48, 1392-1399
-
(1972)
Biochem. Biophys. Res. Commun.
, vol.48
, pp. 1392-1399
-
-
Arnott, S.1
Hukins, D.W.2
Dover, S.D.3
|