Different types of plant chromatin associated with modified histones H3 and H4 and methylated DNA

Genetica

Volumn 139, Issue 3, 2011, Pages 305-314

  Feitoza, Lidiane ^a   Guerra, Marcelo ^a,b  

^a FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^b DEPARTAMENTO DE MICOLOGIA   (Brazil)

Author keywords

Costus; DNA methylation; Eleutherine; Euchromatin; Heterochromatin; Histone methylation and acetylation

Indexed keywords

COSTUS; COSTUS SPIRALIS; ELEUTHERINE; ELEUTHERINE BULBOSA; EUKARYOTA;

EID: 79952746948     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-011-9550-8     Document Type: Article

References (37)

1. Barlow PN (1977) Determinants of nuclear chromatin structure in angiosperms. Nat Bot Biol Veg 18: 193-206.
2. Brasileiro-Vidal AC, Melo-Oliveira MB, Carvalheira GMG, Guerra M (2009) Different chromatin fractions of tomato (Solanum lycopersicum L.) and related species. Micron 40: 851-859.
3. Cedar H, Bergman Y (2009) Linking DNA methylation and histone modification: patterns and paradigms. Nat Rev Genet 10: 295-304.
4. Chang SB, Yang TJ, Datema E et al (2008) FISH mapping and molecular organization of the major repetitive sequences of tomato. Chromosom Res 16: 919-933.
5. Cremonini R, Ruffini Castiglione M, Grif VG et al (2003) Chromosome banding and DNA methylation patterns, chromatin organization and nuclear DNA content in Zingeria biebersteiniana. Biol Plantarum 46: 543-550.
6. Dantas LG, Guerra M (2010) Chromatin differentiation between Theobroma cacao L. and T. grandiflorum. Genet Mol Biol 33: 94-98.
7. Delay C (1949) Recherches sur la structure des noyaux quiescents chez les phanérogames. Rev Cytol Cytophysiol Veg 10: 103-228.
8. Dhar MK, Fuchs J, Houben A (2009) Distribution of eu- and heterochromatin in Plantago ovata. Cytogenet Genom Res 125: 235-240.
9. Fransz P, Hans de Jong J, Lysak M, Ruffini Castiglione M, Schubert I (2002) Interphase chromosomes in Arabidopsis are organized as well defined chromo centers from which euchromatin loops emanate. Proc Natl Acad Sci USA 99: 14584-14589.
10. Fransz P, ten Hoopen R, Tessadori F (2006) Composition and formation of heterochromatin in Arabidopsis thaliana. Chromosom Res 14: 71-82.
11. Fuchs J, Demidov D, Houben A, Schubert I (2006) Chromosomal histone modification patterns-from conservation to diversity. Trends Plant Sci 11: 199-208.
12. Fuks F (2005) DNA methylation and histone modifications: teaming up to silence genes. Curr Opin Genet Dev 15: 1-6.
13. Guerra M (1987) Cytogenetics of Rutaceae IV. Structure and systematic significance of interphase nuclei. Cytologia 52: 213-222.
14. Guerra M (1988a) Characterization of different types of condensed chromatin in Costus (Zingiberaceae). Plant Syst Evol 158: 107-115.
15. Guerra M (1988b) Mitotic and meiotic analysis of a pericentric inversion associated with a tandem duplication in Eleutherine bulbosa. Chromosoma 97: 80-87.
16. Guerra M, Brasileiro-Vidal AC, Arana P, Puertas MJ (2006) Mitotic microtubule development and histone H3 phosphorylation in the holocentric chromosomes of Rhynchospora tenuis (Cyperaceae). Genetica 126: 33-41.
17. Heitz E (1928) Das Heterochromatin der Moose. I. Jahrb Wiss Bot 69: 762-818.
18. Hendzel MJ, Wei Y, Mancini MA et al (1997) Mitosis-specific phosphorylation of histone H3 initiates primarily within pericentromeric heterochromatin during G2 and spreads in an ordered fashion coincident with mitotic chromosome condensation. Chromosoma 106: 348-360.
19. Holmquist GP, Ashley T (2006) Chromosome organization and chromatin modification: influence on genome function and evolution. Cytogenet Genom Res 114: 96-125.
20. Houben A, Demidov D, Gernand D, Meister A, Leach CR, Schubert I (2003) Methylation of histone H3 in euchromatin of plant chromosomes depends on basic nuclear DNA content. Plant J 33: 967-973.
21. Houben A, Demidov D, Caperta AD, Karimi R, Agueci F, Vlasenko L (2007) Phosphorylation of histone H3 in plants-a dynamic affair. Biochim Biophys Acta 1769: 308-315.
22. Jackson JP, Johnson L, Jasencakova Z et al (2004) Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma 112: 308-315.
23. Jin W, Lamb JC, Zhang W, Kolano B, Birchler JA, Jiang J (2008) Histone modifications associated with both A and B chromosomes of maize. Chromosom Res 16: 1203-1214.
24. Kouzarides T (2007) Review chromatin modifications and their function. Cell 128: 693-705.
25. Law JA, Jacobsen SE (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 11: 204-220.
26. Manzanero S, Rutten T, Kotseruba V, Houben A (2002) Alterations in the distribution of histone H3 phosphorylation in mitotic plant chromosomes in response to cold treatment and the protein phosphatase inhibitor cantharidin. Chromosom Res 10: 467-476.
27. Miller OJ, Schnedl W, Allen J, Erlanger BF (1974) 5-Methylcytosine localised in mammalian constitutive heterochromatin. Nature 251: 636-637.
28. Nagl W (1979) Condensed interphase chromatin in plant and animal cell nuclei: fundamental of genetic information. Nature 447: 951-958.
29. Pedrosa A, Sandal N, Stougaard J, Schweizer D, Bachmair A (2002) Chromosomal map of the model legume Lotus japonicus. Genetics 161: 1661-1672.
30. Ribeiro T, Viegas W, Morais-Cecílio L (2009) Epigenetic marks in the mature pollen of Quercus suber L. (Fagaceae). Sex Plant Reprod 22: 1-7.
31. Richards E, Ausubel FM (1988) Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell 53: 127-136.
32. Ruffini Castiglione M, Giraldi E, Frediani M (1995) The DNA methylation pattern of Allium cepa metaphase chromosomes. Biol Zentralbl 114: 57-66.
33. Schotta G, Lachner M, Sarma K et al (2004) A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Gene Dev 18: 1251-1262.
34. Vyskot B, Siroky J, Hladilova R, Belyaev ND, Turner BM (1999) Euchromatic domains in plant chromosomes as revealed by H4 histone acetylation and early DNA replication. Genome 42: 343-350.
35. Wanzenböck EM, Schöfer C, Schweizer D, Bachmair A (1997) Ribosomal transcription units integrated via T-DNA trans-formation associate with the nucleolus and do not require up-stream repeat sequences for activity in Arabidopsis thaliana. Plant J 11: 1007-1016.
36. Wei Y, Mizzen CA, Cook RG, Gorovsky MA, Allis CD (1998) Phosphorylation of histone H3 at serine 10 is correlated with chromosome condensation during mitosis and meiosis in Tetrahymena. Proc Natl Acad Sci USA 95: 7480-7484.
37. Wolf KW, Turner BM (1996) The pattern of histone H4 acetylation on the X chromosome during spermatogenesis of the desert locust Schistocerca gregaria. Genome 39: 854-865.