Microbial communities in sugarcane field soils with and without a sugarcane cropping history

Plant and Soil

Volumn 341, Issue 1-2, 2011, Pages 63-73

  Savario, Carolyn Faye ^a   Hoy, Jeffrey W ^a  

^a LOUISIANA STATE UNIVERSITY AGRICULTURAL CENTER   (United States)

Author keywords

Monoculture; Rhizosphere; Root disease; Soil microbial community; Sugarcane

Indexed keywords

AGRICULTURAL HISTORY; BACTERIUM; COMMUNITY COMPOSITION; CROP YIELD; DISEASE INCIDENCE; FUNGUS; MICROBIAL COMMUNITY; MONOCULTURE; RHIZOSPHERE; ROOT SYSTEM; SOIL MICROORGANISM; SUGAR CANE;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); FUNGI; PSEUDOMONAS FLUORESCENS GROUP; SACCHARUM;

EID: 79952626062     PISSN: 0032079X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11104-010-0622-9     Document Type: Article

References (53)

1. Bell AF (1935) Sick soils. Proc Queensl Soc Sugar Cane Technol 6: 9-18.
2. Bond JP, McGawley EC, Hoy JW (2000) Distribution of plant-parasitic nematodes on sugarcane in Louisiana and efficacy of nematicides. Suppl J Nematol 32(4S): 493-501.
3. Bramley RGV, Ellis N, Nable RO, Garside AL (1996) Changes in soil chemical properties under long-term sugar cane monoculture and their possible role in sugar yield decline. Aust J Soil Res 34: 967-984.
4. Campbell CD, Grayston SJ, Hirst DJ (1997) Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities. J Microbiol Methods 30: 33-41.
5. Cavaglieri L, Orlando J, Etcheverry M (2009) Rhizosphere microbial community structure at different maize plant growth stages and root locations. Microbiol Res 164: 391-399.
6. Chiarini L, Bevivino A, Dalmastri C, Nacamulli C, Tabacchioni S (1998) Influence of plant development, cultivar and soil type on microbial colonization of maize roots. Appl Soil Ecol 8: 11-18.
7. Cooper WE, Chilton JP (1950) Studies on antibiotic soil organisms. I. Actinomycetes antibiotic to Pythium arrhenomanes in sugar-cane soils of Louisiana. Phytopathol 40: 544-551.
8. Di Cello F, Bevivino A, Chiarini R, Fani R, Paffetti D, Tabacchioni S, Dalmastri C (1997) Biodiversity of a Burkholdaria cepacia population isolated from the maize rhizosphere at different plant growth stages. Appl Environ Microbiol 63: 4485-4493.
9. Dissanayake N, Hoy JW (1999) Organic material soil amendment effects on root rot and sugarcane growth and characterization of the materials. Plant Dis 83(11): 1039-1046.
10. Dunbar J, Takala S, Barns SM, Davis JA, Kuske CR (1999) Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl Environ Microbiol 65(4): 1662-1669.
11. Edgerton CW, Tims EC, Mills PJ (1929) Relation of species of Pythium to the root rot disease of sugarcane. Phytopathol 19: 549-564.
12. Fang C, Radosevich M, Fuhrmann JJ (2001) Characterization of rhizosphere microbial community structure in five similar grass species using FAME and BIOLOG analyses. Soil Biol Biochem 33: 679-682.
13. Gagliardi JV, Buyer JS, Angle JS, Russek-Cohen E (2001) Structural and functional analysis of whole-soil microbial communities for risk and efficacy testing following microbial inoculation of wheat roots in diverse soils. Soil Biol Biochem 33: 25-40.
14. Garbeva P, van Veen JA, van Elsas JD (2004) Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annu Rev Phytopathol 42: 243-270.
15. Garbeva P, van Elsas VJ, van Veen A (2008) Rhizosphere microbial community and its response to plant species and soil history. Plant Soil 302: 19-32.
16. Garland JL (1996) Patterns of potential C source utilization by rhizosphere communities. Soil Biol Biochem 28(2): 223-230.
17. Garland JL, Mills AL (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level-sole-carbon-source utilization. Appl Environ Microbiol 57(8): 2351-2359.
18. Garside AL, Bramley RGV, Bristow KL, Holt JA, Magarey RC, Nable RO, Pankhurst CE, Skjemstad JO (1997) Comparisons between paired old and new land sites for sugarcane growth and yield and soil chemical, physical, and biological properties. Proc Aust Soc Sugar Cane Technol 19: 60-66.
19. Germida JJ, Siciliano SD, Freitas JR, Seib AM (1998) Diversity of root-associated bacteria associated with field-grown canola (Brassica napus L.) and wheat (Triticum aestivum L.). FEMS Microbiol Ecol 26: 43-50.
20. Ghosh S, Dickstein R, Knight TJ, Langston-Unkefer PJ (2001) Interactions between Pseudomonas syringae pv. tabaci and two rhizosphere hosts, Medicago sativa and Avena sativa. J Plant Biochem Biotechnol 10(2): 91-99.
21. Goodfriend WL (1998) Microbial community patterns of potential substrate utilization: a comparison of salt marsh, sand dune, and seawater-irrigated agronomic systems. Soil Biol Biochem 30(8/9): 1169-1176.
22. Grayston SJ, Campbell CD (1996) Functional biodiversity of microbial communities in the rhizospheres of hybrid larch (Larix eurolepis) and Sitka spruce (Picea sitchensis). Tree Physiol 16: 1031-1038.
23. Grayston SJ, Wang S, Campbell CD (1998) Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biol Biochem 30: 369-378.
24. Hoy JW, Schneider RW (1988) Role of Pythium in sugarcane stubble decline: effects on plant growth in field soil. Phytopathol 78: 1692-1696.
25. Hurst CJ, Crawford RL, Knudsen GR, McInerney MJ, Stetzenbach LD (eds) (2002) Manual of environmental microbiology, 2nd edn. ASM, Washington, DC.
26. Insam H, Hitzl W (1999) Data evaluation of community-level physiological profiles; a reply to the letter of P. J. A. Howard. Soil Biol Biochem 31: 1198-1200.
27. Johnson LF (1954) Antibiosis in relation to Pythium root rot of sugarcane and corn. Phytopathol 44: 69-73.
28. Kaiser O, Puhler A, Selbitschka W (2001) Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (Brassica napus cv. Westar) employing cultivation-dependent and cultivation independent approaches. Microb Ecol 42: 136-149.
29. Kao M-M, Hsieh T-S (1986) Studies on the relationship between rhizosphere fungi and the growth of sugarcane: Inhibition of sugarcane growth by fungal metabolites. Taiwan Sugar 33: 8-14.
30. Komada H (1975) Development of a selective medium for quantitative isolation of Fusarium oxysporum from natural soil. Rev Plant Protect Res 8: 114-125.
31. Legendre P, Legendre L (1998) Numerical ecology, 2nd English edn. Elsevier, Amsterdam.
32. Lupwayi NZ, Rice WA, Clayton GW (1998) Soil microbial diversity and community structure under wheat as influenced by tillage and crop rotation. Soil Biol Biochem 30(13): 1733-1741.
33. Magarey RC (1996) Microbial aspects of sugarcane yield decline. Aust J Agric Res 47: 307-322.
34. Magarey RC (1999) Reduced productivity in long-term monoculture: where are we placed? Aust Plant Pathol 28: 11-20.
35. Magarey RC, Bull JI, Blair BL, Johnson EJ (1997) Biological studies of soils in paired old and new land sites growing sugarcane. Aust J Exp Agric 37: 451-457.
36. Martin JP (1950) Use of acid, rose bengal, and streptomycin in the plate method for estimating soil fungi. Soil Sci 69: 215-232.
37. Mazzola M, Gu Y-H (2000) Impact of wheat cultivation on microbial communities from replant soils and apple growth in greenhouse trials. Phytopathol 90: 114-119.
38. Muchow RC, Robertson MJ, Wood AW, Spillman MF (1994) Effect of soil fumigation on sugarcane productivity under high yielding conditions in north Queensland. Proc Aust Soc Sugar Cane Technol 16: 187-192.
39. Nehl DB, Allen SJ, Brown JF (1997) Deleterious rhizosphere bacteria: an integrating perspective. Appl Soil Ecol 5: 1-20.
40. Pankhurst CE, Hawke BG, Holt JA, Magarey RC, Garside AL (2000) Effect of rotation breaks on the diversity of bacteria in the rhizosphere of sugarcane and its potential impact on yield decline. Proc Aust Soc Sugar Cane Technol 22: 77-83.
41. Richaume A, Steinberg L, Jocteur-Monrozier L, Faurie G (1993) Differences between direct and indirect enumeration of soil bacteria: the influence of soil structure and cell location. Soil Biol Biochem 25: 641-643.
42. Ros M, Gobema M, Pascual JA, Klarnmer S, Insain H (2008) 16S rDNA analysis reveals low microbial diversity in community level physiological profile assays. J Microbiol Methods 72(3): 221-226. doi: 10. 1016/j. mimet. 2008. 01. 003.
43. Rouatt JW, Katznelson H (1961) A study of the bacteria on the root surface and in the rhizosphere soil of crop plants. J Appl Bacteriol 24(2): 164-171.
44. Schneider RW (ed) (1982) Suppressive soils and plant disease. American Phytopathological Society, St. Paul.
45. Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160: 47-56.
46. Simpfendorfer S, Kirkegaard JA, Heenan DP, Wong PTW (2001) Involvement of root inhibitory Pseudomonas spp. in the poor early growth of direct drilled wheat: studies in intact cores. Aust J Agric Res 52(8): 845-853.
47. Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Hueuer H, Berg G (2001) Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol 67: 4742-4751.
48. Smiley RW (1979) Wheat-rhizoplane pseudomonads as antagonists of Gaeumannomyces graminis. Soil Biol Biochem 11: 371-376.
49. Sørheim R, Torsvik VL, Goksøyr J (1989) Phenotypical divergences between populations of soil bacteria isolated on different media. Microb Ecol 17: 181-192.
50. Torsvik V, Goksøyr J, Daae FL (1990) High diversity in DNA of soil bacteria. Appl Environ Microbiol 56: 782-787.
51. van Elsas JD, Garbeva P, Salles JF (2002) Effect of agronomical measures on the microbial diversity of soil as related to the suppression of soil-borne plant pathogens. Biodegredation 13: 29-40.
52. Watanabe T, Tzean SS, Leu LS (1974) Fungi isolated from the underground parts of sugar cane in relation to the poor ratooning in Taiwan. Trans Mycol Soc Jpn 15(1): 30-41.
53. Wieland G, Neumann R, Backhaus H (2001) Variation of microbial communities in soil, rhizosphere and rhizoplane in response to crop species, soil type, and crop development. Appl Environ Microbiol 67: 5849-5854.