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Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 83, Issue 2, 2011, Pages

Protein sliding and hopping kinetics on DNA

(3) Desantis, Michael C a Li, Je Luen b Wang, Y M a

a WASHINGTON UNIVERSITY (United States)

b D E SHAW RESEARCH (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EXPERIMENTAL DATA; FAST DIFFUSION; IN-VIVO; MONTE CARLO SIMULATION; ROOT MEAN SQUARES; SALT CONCENTRATION;

COMPUTER SIMULATION; DIFFUSION; DNA; MONTE CARLO METHODS; NUCLEIC ACIDS; TRAJECTORIES;

PROTEINS;

EID: 79952494759 PISSN: 15393755 EISSN: 15502376 Source Type: Journal
DOI: 10.1103/PhysRevE.83.021907 Document Type: Article

Times cited : (16)

References (31)

1
- 0014945567
- JMOBAK 0022-2836 10.1016/0022-2836(70)90074-4
- A. D. Riggs, S. Bougeois, and M. Cohn, J. Mol. Biol. JMOBAK 0022-2836 10.1016/0022-2836(70)90074-4 53, 401 (1970).
- (1970) J. Mol. Biol. , vol.53 , pp. 401
- Riggs, A.D.¹ Bougeois, S.² Cohn, M.³

2
- 3042579602
- How do site-specific DNA-binding proteins find their targets?
- DOI 10.1093/nar/gkh624
- S. E. Halford and J. F. Marko, Nucl. Acids Res. NARHAD 0305-1048 10.1093/nar/gkh624 32, 3040 (2004). (Pubitemid 39022995)
- (2004) Nucleic Acids Research , vol.32 , Issue.10 , pp. 3040-3052
- Halford, S.E.¹ Marko, J.F.²

3
- 33746649820
- Single molecule measurements of repressor protein 1D diffusion on DNA
- DOI 10.1103/PhysRevLett.97.048302
- Y. M. Wang, R. H. Austin, and E. C. Cox, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.97.048302 97, 048302 (2006). (Pubitemid 44147316)
- (2006) Physical Review Letters , vol.97 , Issue.4 , pp. 048302
- Wang, Y.M.¹ Austin, R.H.² Cox, E.C.³

4
- 32644489284
- Facilitated diffusion of DNA-binding proteins
- DOI 10.1103/PhysRevLett.96.018104
- K. V. Klenin, H. Merlitz, J. Langowski, and C. X. Wu, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.96.018104 96, 018104 (2006). (Pubitemid 43248412)
- (2006) Physical Review Letters , vol.96 , Issue.1 , pp. 018104
- Klenin, K.V.¹ Merlitz, H.² Langowski, J.³ Wu, C.-X.⁴

5
- 51049093016
- BIOJAU 0006-3495 10.1529/biophysj.108.129825
- L. Hu, A. Y. Grosberg, and R. Bruinsma, Biophys. J. BIOJAU 0006-3495 10.1529/biophysj.108.129825 95, 1151 (2008).
- (2008) Biophys. J. , vol.95 , pp. 1151
- Hu, L.¹ Grosberg, A.Y.² Bruinsma, R.³

6
- 46349108554
- Spatial effects on the speed and reliability of protein-DNA search
- DOI 10.1093/nar/gkn173
- Z. Wunderlich and L. A. Mirny, Nucl. Acids Res. NARHAD 0305-1048 10.1093/nar/gkn173 36, 3570 (2008). (Pubitemid 351917521)
- (2008) Nucleic Acids Research , vol.36 , Issue.11 , pp. 3570-3578
- Wunderlich, Z.¹ Mirny, L.A.²

7
- 77955223561
- BIOJAU 0006-3495 10.1016/j.bpj.2010.04.026
- R. Murugan, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2010.04.026 99, 353 (2010).
- (2010) Biophys. J. , vol.99 , pp. 353
- Murugan, R.¹

8
- 77953564350
- BIOJAU 0006-3495 10.1016/j.bpj.2010.02.055
- M. A. D. de la Rosa, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2010.02. 055 98, 2943 (2010).
- (2010) Biophys. J. , vol.98 , pp. 2943
- De La Rosa, M.A.D.¹

9
- 0033021362
- BIOJAU 0006-3495 10.1016/S0006-3495(99)77237-1
- Y. Harada, Biophys. J. BIOJAU 0006-3495 10.1016/S0006-3495(99)77237-1 76, 709 (1999).
- (1999) Biophys. J. , vol.76 , pp. 709
- Harada, Y.¹

10
- 33645807371
- PNASA6 0027-8424 10.1073/pnas.0509723103
- P. C. Blainey, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0509723103 103, 5752 (2006).
- (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 5752
- Blainey, P.C.¹

11
- 31944435731
- Long-distance lateral diffusion of human Rad51 on double-stranded DNA
- DOI 10.1073/pnas.0508366103
- A. Granéli, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0508366103 103, 1221 (2006). (Pubitemid 43191146)
- (2006) Proceedings of the National Academy of Sciences of the United States of America , vol.103 , Issue.5 , pp. 1221-1226
- Graneli, A.¹ Yeykal, C.C.² Robertson, R.B.³ Greene, E.C.⁴

12
- 34249932435
- Probing transcription factor dynamics at the single-molecule level in a living cell
- DOI 10.1126/science.1141967
- J. Elf, G.-W. Li, and X. S. Xie, Science SCIEAS 0036-8075 10.1126/science.1141967 316, 1191 (2007). (Pubitemid 46877481)
- (2007) Science , vol.316 , Issue.5828 , pp. 1191-1194
- Elf, J.¹ Li, G.-W.² Xie, X.S.³

13
- 34547138714
- Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules
- DOI 10.1093/nar/gkm332
- J. H. Kim and R. G. Larson, Nucl. Acids Res. NARHAD 0305-1048 10.1093/nar/gkm332 35, 3848 (2007). (Pubitemid 47244676)
- (2007) Nucleic Acids Research , vol.35 , Issue.11 , pp. 3848-3858
- Kim, J.H.¹ Larson, R.G.²

14
- 35649018595
- Dynamic Basis for One-Dimensional DNA Scanning by the Mismatch Repair Complex Msh2-Msh6
- DOI 10.1016/j.molcel.2007.09.008, PII S1097276507006181
- J. Gorman, Mol. Cell MOCEFL 1097-2765 10.1016/j.molcel.2007.09.008 28, 359 (2007). (Pubitemid 350030566)
- (2007) Molecular Cell , vol.28 , Issue.3 , pp. 359-370
- Gorman, J.¹ Chowdhury, A.² Surtees, J.A.³ Shimada, J.⁴ Reichman, D.R.⁵ Alani, E.⁶ Greene, E.C.⁷

15
- 47249153641
- Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
- DOI 10.1093/nar/gkn376
- I. Bonnet, Nucl. Acids Res. NARHAD 0305-1048 10.1093/nar/gkn376 36, 4118 (2008). (Pubitemid 351984827)
- (2008) Nucleic Acids Research , vol.36 , Issue.12 , pp. 4118-4127
- Bonnet, I.¹ Biebricher, A.² Porte, P.³ Loverdo, C.⁴ Benichou, O.⁵ Voituriez, R.⁶ Escude, C.⁷ Wende, W.⁸ Pingoud, A.⁹ Desbiolles, P.¹⁰

16
- 49449110684
- PNASA6 0027-8424 10.1073/pnas.0802676105
- G. Komazin-Meredith, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0802676105 105, 10721 (2008).
- (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 10721
- Komazin-Meredith, G.¹

17
- 46749108829
- BIOJAU 0006-3495 10.1529/biophysj.108.134122
- A. Tafvizi, Biophys. J. BIOJAU 0006-3495 10.1529/biophysj.108.134122 95, L01 (2008).
- (2008) Biophys. J. , vol.95 , pp. 01
- Tafvizi, A.¹

18
- 49449088997
- PNASA6 0027-8424 10.1073/pnas.0801612105
- R. H. Porecha and J. T. Stivers, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0801612105 105, 10791 (2008).
- (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 10791
- Porecha, R.H.¹ Stivers, J.T.²

19
- 67649394764
- BIOJAU 0006-3495 10.1016/j.bpj.2009.01.035
- A. Biebricher, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2009.01.035 96, L50 (2009).
- (2009) Biophys. J. , vol.96 , pp. 50
- Biebricher, A.¹

20
- 65549117030
- BIOJAU 0006-3495 10.1016/j.bpj.2008.11.021
- Y. Lin, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2008.11.021 96, 1911 (2009).
- (2009) Biophys. J. , vol.96 , pp. 1911
- Lin, Y.¹

21
- 76649145153
- PNASA6 0027-8424 10.1073/pnas.0912664107
- C. M. Etson, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0912664107 107, 1900 (2010).
- (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 1900
- Etson, C.M.¹

22
- 63849284078
- PNASA6 1745-2473 10.1038/nphys1222
- G.-W. Li, O. G. Berg, and J. Elf, Nat. Phys. PNASA6 1745-2473 10.1038/nphys1222 5, 294 (2009).
- (2009) Nat. Phys. , vol.5 , pp. 294
- Li, G.-W.¹ Berg, O.G.² Elf, J.³

23
- 0004237841
- CRC Press, London
- A. Revzin, The Biology of Nonspecific DNA PROTEIN INTERACTIONS (CRC Press, London, 1990).
- (1990) The Biology of Nonspecific DNA PROTEIN INTERACTIONS
- Revzin, A.¹

24
- 27644460480
- Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA
- DOI 10.1073/pnas.0505378102
- D. M. Gowers, G. G. Wilson, and S. E. Halford, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0505378102 102, 15883 (2005). (Pubitemid 41552837)
- (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.44 , pp. 15883-15888
- Gowers, D.M.¹ Wilson, G.G.² Halford, S.E.³

25
- 79952517088
- 3. This relation has also been verified by simulations.
- 3. This relation has also been verified by simulations.

26
- 58149527533
- JCPSA6 0021-9606 10.1063/1.3050097
- A.-M. Florescu and M. Joyeux, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.3050097 130, 015103 (2009).
- (2009) J. Chem. Phys. , vol.130 , pp. 015103
- Florescu, A.-M.¹ Joyeux, M.²

27
- 66649116808
- PRLTAO 0031-9007 10.1103/PhysRevLett.102.228101
- V. Dahirel, F. Paillusson, M. Jardat, M. Barbi, and J. M. Victor, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.102.228101 102, 228101 (2009).
- (2009) Phys. Rev. Lett. , vol.102 , pp. 228101
- Dahirel, V.¹ Paillusson, F.² Jardat, M.³ Barbi, M.⁴ Victor, J.M.⁵

28
- 0004232671
- Princeton University Press, Princeton, NJ
- H. C. Berg, Random Walks in Biology (Princeton University Press, Princeton, NJ, 1993).
- (1993) Random Walks in Biology
- Berg, H.C.¹

29
- 0024040338
- PNASA6 0027-8424 10.1073/pnas.85.13.4610
- M. Ricchetti, W. Metzger, and H. Heumann, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.85.13.4610 85, 4610 (1988).
- (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 4610
- Ricchetti, M.¹ Metzger, W.² Heumann, H.³

30
- 65549138947
- PRLTAO 0031-9007 10.1103/PhysRevLett.102.188101
- C. Loverdo, O. Benichou, R. Voituriez, A. Biebricher, I. Bonnet, and P. Desbiolles, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.102.188101 102, 188101 (2009).
- (2009) Phys. Rev. Lett. , vol.102 , pp. 188101
- Loverdo, C.¹ Benichou, O.² Voituriez, R.³ Biebricher, A.⁴ Bonnet, I.⁵ Desbiolles, P.⁶

31
- 34247627435
- Stretching and immobilization of DNA for studies of protein-DNA interactions at the single-molecule level
- DOI 10.1007/s11671-007-9057-5
- J. H. Kim, Nano. Res. Lett. PRLTAO 1931-7573 10.1007/s11671-007-9057-5 2, 185 (2007). (Pubitemid 46676300)
- (2007) Nanoscale Research Letters , vol.2 , Issue.4 , pp. 185-201
- Kim, J.H.¹ Dukkipati, V.R.² Pang, S.W.³ Larson, R.G.⁴

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