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Volumn 21, Issue 7, 2011, Pages 2129-2132

On the function of the internal cavity of histone deacetylase protein 8: R37 is a crucial residue for catalysis

Author keywords

Acetylation; Chromatin; Epigenetic; HDAC; Histones

Indexed keywords

ACETIC ACID; ARGININE; GLUTAMIC ACID; GLYCINE; HISTONE DEACETYLASE 8; HYDROGEN; OXYGEN;

EID: 79952486549     PISSN: 0960894X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bmcl.2011.01.128     Document Type: Article
Times cited : (34)

References (24)
  • 17
    • 79952484641 scopus 로고    scopus 로고
    • note
    • 18 The structural diagram was prepared using PYMOL (www.pymol.org) and VMD. All graphs were plotted using the XMGRACE program (http://plasma-gate.weizmann.ac.il/Grace). The overall conformational stability of the HDAC8 protein was established by calculating the Ca root-mean-squared-deviation (RMSD) over the course of a 20 ns dynamics simulation. After an initial increase, the Cα RMSD was constant, at 1.65 Å. The flexible regions of the protein were also calculated using the root mean squared fluctuation (RMSF). The fluctuations are relatively small in helices present in the core of the protein, with increased degree of fluctuation in the loops connecting helices.
  • 20
    • 79952484317 scopus 로고    scopus 로고
    • note
    • 4
  • 21
    • 79952486683 scopus 로고    scopus 로고
    • note
    • R37A].
  • 23
    • 79952485459 scopus 로고    scopus 로고
    • note
    • 23


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.