-
1
-
-
37249034083
-
Coupling and coordination in gene expression: A systems biology view
-
Komili S, Silver PA. Coupling and coordination in gene expression: a systems biology view. Nat Rev Genet 2008; 9:38-48.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 38-48
-
-
Komili, S.1
Silver, P.A.2
-
2
-
-
70349125488
-
Co-transcriptional splicing of constitutive and alternative exons
-
Pandya-Jones A, Black DL. Co-transcriptional splicing of constitutive and alternative exons. RNA 2009; 15:1896-1908.
-
(2009)
RNA
, vol.15
, pp. 1896-1908
-
-
Pandya-Jones, A.1
Black, D.L.2
-
3
-
-
33845643952
-
A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional
-
Tardiff DF, Lacadie SA, Rosbash M. A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional. Mol Cell 2006; 24:917-929.
-
(2006)
Mol Cell
, vol.24
, pp. 917-929
-
-
Tardiff, D.F.1
Lacadie, S.A.2
Rosbash, M.3
-
4
-
-
70350005395
-
Cotranscriptionality: The transcription elongation complex as a nexus for nuclear transactions
-
Perales R, Bentley D. Cotranscriptionality: The transcription elongation complex as a nexus for nuclear transactions. Mol Cell 2009; 36:178-191.
-
(2009)
Mol Cell
, vol.36
, pp. 178-191
-
-
Perales, R.1
Bentley, D.2
-
5
-
-
34248585758
-
The nuclear nurture and cytoplasmic nature of localized mRNPs
-
Giorgi C, Moore MJ. The nuclear nurture and cytoplasmic nature of localized mRNPs. Semin Cell Dev Biol 2007; 18:186-193.
-
(2007)
Semin Cell Dev Biol
, vol.18
, pp. 186-193
-
-
Giorgi, C.1
Moore, M.J.2
-
6
-
-
30044431985
-
RNA emerging from the active site of RNA polymerase II interacts with the Rpb7 subunit
-
Luse DS. RNA emerging from the active site of RNA polymerase II interacts with the Rpb7 subunit. Nat Struct Mol Biol 2006; 13:49-54.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 49-54
-
-
Luse, D.S.1
-
7
-
-
0024396228
-
RNA polymerase II sub-unit RPB4 is essential for high- and low-temperature yeast cell growth
-
Woychik NA, Young RA. RNA polymerase II sub-unit RPB4 is essential for high- and low-temperature yeast cell growth. Mol Cell Biol 1989; 9:2854-2859.
-
(1989)
Mol Cell Biol
, vol.9
, pp. 2854-2859
-
-
Woychik, N.A.1
Young, R.A.2
-
8
-
-
0025962218
-
Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro
-
Edwards AM, Kane CM, Young RA, Kornberg RD. Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro. J Biol Chem 1991; 266:71-75.
-
(1991)
J Biol Chem
, vol.266
, pp. 71-75
-
-
Edwards, A.M.1
Kane, C.M.2
Young, R.A.3
Kornberg, R.D.4
-
9
-
-
55549121958
-
Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex
-
Jasiak AJ, Hartmann H, Karakasili E, Kalocsay M, Flatley A, Kremmer E, et al. Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex. J Biol Chem 2008; 283:26423-26427
-
(2008)
J Biol Chem
, vol.283
, pp. 26423-26427
-
-
Jasiak, A.J.1
Hartmann, H.2
Karakasili, E.3
Kalocsay, M.4
Flatley, A.5
Kremmer, E.6
-
10
-
-
0031785748
-
Rpb4, a subunit of RNA. polymerase II, enables the enzyme to transcribe at temperature extremes in vitro
-
Rosenheck S, Choder M. Rpb4, a subunit of RNA. polymerase II, enables the enzyme to transcribe at temperature extremes in vitro. J Bacteriol 1998; 180:6187-6192.
-
(1998)
J Bacteriol
, vol.180
, pp. 6187-6192
-
-
Rosenheck, S.1
Choder, M.2
-
11
-
-
0034821650
-
Intracellular contents and assembly states of all 12 subunits of the RNA polymerase II in the fission yeast -Schizosaccharomyces pombe
-
Kimura M, Sakurai H, Ishihama A. Intracellular contents and assembly states of all 12 subunits of the RNA polymerase II in the fission yeast -Schizosaccharomyces pombe. Eur J Biochem 2001; 268:612-619.
-
(2001)
Eur J Biochem
, vol.268
, pp. 612-619
-
-
Kimura, M.1
Sakurai, H.2
Ishihama, A.3
-
12
-
-
77956898581
-
HSP90 and its R2TP/ prefoldin-like cochaperone are involved in the cytoplasmic assembly of RNA polymerase II
-
Boulon S, Pradet-Balade B, Verheggen C, Molle D, Boireau S, Georgieva M, et al. HSP90 and its R2TP/ prefoldin-like cochaperone are involved in the cytoplasmic assembly of RNA polymerase II. Mol Cell 39:912-924.
-
Mol Cell
, vol.39
, pp. 912-924
-
-
Boulon, S.1
Pradet-Balade, B.2
Verheggen, C.3
Molle, D.4
Boireau, S.5
Georgieva, M.6
-
13
-
-
33845604554
-
Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways
-
Selitrennik M, Duek L, Lotan R, Choder M. Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways. Eukaryot Cell 2006; 5:2092-2103.
-
(2006)
Eukaryot Cell
, vol.5
, pp. 2092-2103
-
-
Selitrennik, M.1
Duek, L.2
Lotan, R.3
Choder, M.4
-
14
-
-
29144508551
-
The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs
-
Lotan R, Bar-On VG, Harel-Sharvit L, Duek L, Melamed D, Choder M. The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs. Gene Dev 2005; 19:3004-3016.
-
(2005)
Gene Dev
, vol.19
, pp. 3004-3016
-
-
Lotan, R.1
Bar-On, V.G.2
Harel-Sharvit, L.3
Duek, L.4
Melamed, D.5
Choder, M.6
-
15
-
-
56849103665
-
The control of mRNA decapping and P-body formation
-
Franks TM, Lykke-Andersen J. The control of mRNA decapping and P-body formation. Mol Cell 2008; 32:605-615.
-
(2008)
Mol Cell
, vol.32
, pp. 605-615
-
-
Franks, T.M.1
Lykke-Andersen, J.2
-
16
-
-
34748850800
-
The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms
-
Lotan R, Goler-Baron V, Duek L, Haimovich G, Choder M. The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms. J Cell Biol 2007; 178:1133-1143.
-
(2007)
J Cell Biol
, vol.178
, pp. 1133-1143
-
-
Lotan, R.1
Goler-Baron, V.2
Duek, L.3
Haimovich, G.4
Choder, M.5
-
17
-
-
48749090496
-
Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes
-
Goler-Baron V, Selitrennik M, Barkai O, Haimovich G, Lotan R, Choder M. Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes. Gene Dev 2008; 22:2022-2027
-
(2008)
Gene Dev
, vol.22
, pp. 2022-2027
-
-
Goler-Baron, V.1
Selitrennik, M.2
Barkai, O.3
Haimovich, G.4
Lotan, R.5
Choder, M.6
-
18
-
-
78149478886
-
RNA polymerase II subunits link transcription and mRNA decay to translation
-
Harel-Sharvit L, Eldad N, Haimovich G, Barkai O, Duek L, Choder M. RNA polymerase II subunits link transcription and mRNA decay to translation. Cell 2010; 143:552-563.
-
(2010)
Cell
, vol.143
, pp. 552-563
-
-
Harel-Sharvit, L.1
Eldad, N.2
Haimovich, G.3
Barkai, O.4
Duek, L.5
Choder, M.6
-
19
-
-
33748924333
-
eIF3: A versatile scaffold for translation initiation complexes
-
Hinnebusch AG. eIF3: a versatile scaffold for translation initiation complexes. Trends Biochem Sci 2006; 31:553-562.
-
(2006)
Trends Biochem Sci
, vol.31
, pp. 553-562
-
-
Hinnebusch, A.G.1
-
20
-
-
27144515901
-
Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies
-
Brengues M, Teixeira D, Parker R. Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 2005; 310:486-489.
-
(2005)
Science
, vol.310
, pp. 486-489
-
-
Brengues, M.1
Teixeira, D.2
Parker, R.3
-
21
-
-
8544251268
-
Rpb4 and Rpb7: Subunits of RNA polymerase II and beyond
-
Choder M. Rpb4 and Rpb7: subunits of RNA polymerase II and beyond. Trends Biochem Sci 2004; 29:674-681.
-
(2004)
Trends Biochem Sci
, vol.29
, pp. 674-681
-
-
Choder, M.1
-
22
-
-
0038107498
-
Rpb4p, a subunit of RNA polymerase II, mediates mRNA export during stress
-
Farago M, Nahari T, Hammel C, Cole CN, Choder M. Rpb4p, a subunit of RNA polymerase II, mediates mRNA export during stress. Mol Biol Cell 2003; 14:2744-2755.
-
(2003)
Mol Biol Cell
, vol.14
, pp. 2744-2755
-
-
Farago, M.1
Nahari, T.2
Hammel, C.3
Cole, C.N.4
Choder, M.5
-
23
-
-
60149086205
-
mRNA localization: Gene expression in the spatial dimension
-
Martin KC, Ephrussi A. mRNA localization: Gene expression in the spatial dimension. Cell 2009; 136:719-730.
-
(2009)
Cell
, vol.136
, pp. 719-730
-
-
Martin, K.C.1
Ephrussi, A.2
-
24
-
-
0037314639
-
Real-time visualization of ZBP1 association with (3-Actin mRNA during transcription and localization
-
Oleynikov Y, Singer RH. Real-time visualization of ZBP1 association with (3-Actin mRNA during transcription and localization. Curr Biol 2003; 13:199-207
-
(2003)
Curr Biol
, vol.13
, pp. 199-207
-
-
Oleynikov, Y.1
Singer, R.H.2
-
25
-
-
36849088518
-
ZBP2 facilitates binding of ZBP1 to (3-Actin mRNA during transcription
-
Pan F, Huttelmaier S, Singer RH, Gu W ZBP2 facilitates binding of ZBP1 to (3-Actin mRNA during transcription. Mol Cell Biol 2007; 27:8340-8351.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 8340-8351
-
-
Pan, F.1
Huttelmaier, S.2
Singer, R.H.3
Gu, W.4
-
26
-
-
2342439151
-
Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization
-
Hachet O, Ephrussi A. Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization. Nature 2004; 428:959-963.
-
(2004)
Nature
, vol.428
, pp. 959-963
-
-
Hachet, O.1
Ephrussi, A.2
-
27
-
-
1442354190
-
An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay
-
Palacios IM, Gatfield D, St. Johnston D, Izaurralde E. An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay. Nature 2004; 427:753-757
-
(2004)
Nature
, vol.427
, pp. 753-757
-
-
Palacios, I.M.1
Gatfield, D.2
St. Johnston, D.3
Izaurralde, E.4
-
28
-
-
17644443879
-
In vivo recruitment of exon junction complex proteins to transcription sites in mammalian cell nuclei
-
Custodio N, Carvalho C, Condado I, Antoniou M, Blencowe BJ, Carmo-Fonseca M. In vivo recruitment of exon junction complex proteins to transcription sites in mammalian cell nuclei. RNA 2004; 10:622-633.
-
(2004)
RNA
, vol.10
, pp. 622-633
-
-
Custodio, N.1
Carvalho, C.2
Condado, I.3
Antoniou, M.4
Blencowe, B.J.5
Carmo-Fonseca, M.6
-
29
-
-
0141482078
-
Widespread cytoplasmic mRNA transport in yeast: Identification of 22 bud-localized transcripts using DNA microarray analysis
-
Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, Herschlag D, et al. Widespread cytoplasmic mRNA transport in yeast: Identification of 22 bud-localized transcripts using DNA microarray analysis. Proc Natl Acad Sci USA 2003; 100:11429-11434.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11429-11434
-
-
Shepard, K.A.1
Gerber, A.P.2
Jambhekar, A.3
Takizawa, P.A.4
Brown, P.O.5
Herschlag, D.6
-
30
-
-
39949084297
-
Local regulation of mRNA translation: New insights from the bud
-
Paquin N, Chartrand P. Local regulation of mRNA translation: new insights from the bud. Trends Cell Biol 2008; 18:105-111.
-
(2008)
Trends Cell Biol
, vol.18
, pp. 105-111
-
-
Paquin, N.1
Chartrand, P.2
-
31
-
-
18944388902
-
Identification of a conserved RNA motif essential for She2p recognition and mRNA localization to the yeast bud
-
Olivier C, Poirier G, Gendron P, Boisgontier A, Major F, Chartrand P. Identification of a conserved RNA motif essential for She2p recognition and mRNA localization to the yeast bud. Mol Cell Biol 2005; 25:4752-4766.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 4752-4766
-
-
Olivier, C.1
Poirier, G.2
Gendron, P.3
Boisgontier, A.4
Major, F.5
Chartrand, P.6
-
32
-
-
0037164870
-
Ribonucleoprotein-dependent localization of the yeast class V myosin Myo4p
-
Kruse C, Jaedicke A, Beaudouin J, Bohl F, Ferring D, Guttler T, et al. Ribonucleoprotein-dependent localization of the yeast class V myosin Myo4p. J Cell Biol 2002; 159:971-982.
-
(2002)
J Cell Biol
, vol.159
, pp. 971-982
-
-
Kruse, C.1
Jaedicke, A.2
Beaudouin, J.3
Bohl, F.4
Ferring, D.5
Guttler, T.6
-
33
-
-
48649110792
-
Nuclear transit of the RNA-binding protein She2 is required for translational control of localized ASH1 mRNA
-
Du TG, Jellbauer S, Müller M, Schmid M, Niessing D, Jansen RP. Nuclear transit of the RNA-binding protein She2 is required for translational control of localized ASH1 mRNA. EMBO Rep 2008; 9:781-787.
-
(2008)
EMBO Rep
, vol.9
, pp. 781-787
-
-
Du, T.G.1
Jellbauer, S.2
Müller, M.3
Schmid, M.4
Niessing, D.5
Jansen, R.P.6
-
34
-
-
65249131779
-
Nuclear shuttling of She2p couples ASH1 mRNA localization to its translational repression by recruiting Loc1p and Puf6p
-
Shen Z, Paquin N, Forget A, Chartrand P. Nuclear shuttling of She2p couples ASH1 mRNA localization to its translational repression by recruiting Loc1p and Puf6p. Mol Biol Cell 2009; 20:2265-2275.
-
(2009)
Mol Biol Cell
, vol.20
, pp. 2265-2275
-
-
Shen, Z.1
Paquin, N.2
Forget, A.3
Chartrand, P.4
-
35
-
-
77956285483
-
Cotranscriptional recruitment of She2p by RNA pol II elongation factor Spt4-Spt5/DSIF promotes mRNA localization to the yeast bud
-
Shen Z, St-Denis A, Chartrand P. Cotranscriptional recruitment of She2p by RNA pol II elongation factor Spt4-Spt5/DSIF promotes mRNA localization to the yeast bud. Gene Dev 2010; 24:1914-1926.
-
(2010)
Gene Dev
, vol.24
, pp. 1914-1926
-
-
Shen, Z.1
St-Denis, A.2
Chartrand, P.3
-
36
-
-
14444275279
-
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
-
Wada T, Takagi T, Yamaguchi Y, Ferdous A, Imai T, Hirose S, et al. DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Gene Dev 1998; 12:343-356.
-
(1998)
Gene Dev
, vol.12
, pp. 343-356
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Ferdous, A.4
Imai, T.5
Hirose, S.6
-
37
-
-
0032004953
-
Evidence that Spt4, Spt5 and Spt6 control transcription elongation by RNA polymerase II in Saccharomy cescerevisiae
-
Hartzog GA, Wada T, Handa H, Winston F. Evidence that Spt4, Spt5 and Spt6 control transcription elongation by RNA polymerase II in Saccharomy cescerevisiae. Gene Dev 1998; 12:357-369.
-
(1998)
Gene Dev
, vol.12
, pp. 357-369
-
-
Hartzog, G.A.1
Wada, T.2
Handa, H.3
Winston, F.4
-
38
-
-
0033566042
-
Transcription elongation factor hSPT5 stimulates mRNA capping
-
Wen Y, Shatkin AJ. Transcription elongation factor hSPT5 stimulates mRNA capping. Gene Dev 1999; 13:1774-1779.
-
(1999)
Gene Dev
, vol.13
, pp. 1774-1779
-
-
Wen, Y.1
Shatkin, A.J.2
-
39
-
-
0037313160
-
Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins
-
Lindstrom DL, Squazzo SL, Muster N, Burckin TA, Wachter KC, Emigh CA, et al. Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins. Mol Cell Biol 2003; 23:1368-1378.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 1368-1378
-
-
Lindstrom, D.L.1
Squazzo, S.L.2
Muster, N.3
Burckin, T.A.4
Wachter, K.C.5
Emigh, C.A.6
-
40
-
-
28544443162
-
Spatial regulation of beta-actin mRNA translation by Src-dependent phosphorylation of ZBP1
-
Huttelmaier S, Zenklusen D, Lederer M, Lorenz M, Dictenberg J, Meng X, et al. Spatial regulation of beta-actin mRNA translation by Src-dependent phosphorylation of ZBP1. Nature 2005; 438:512-515.
-
(2005)
Nature
, vol.438
, pp. 512-515
-
-
Huttelmaier, S.1
Zenklusen, D.2
Lederer, M.3
Lorenz, M.4
Dictenberg, J.5
Meng, X.6
|