100% complete assignment of non-labile 1H, 13C, and 15N signals for calcium-loaded calbindin D 9k P43G

Biomolecular NMR Assignments

Volumn 5, Issue 1, 2011, Pages 79-84

  Oktaviani, Nur Alia ^a   Otten, Renee ^a   Dijkstra, Klaas ^a   Scheek, Ruud M ^a   Thulin, Eva ^b   Akke, Mikael ^b   Mulder, Frans A A ^a,b  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

^b LUND UNIVERSITY   (Sweden)

Author keywords

100 Complete assignment; Assignment strategy; Calbindin D 9k; NMR spectroscopy

Indexed keywords

CALBINDIN; CALCIUM; CARBON; HYDROGEN; NITROGEN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMAL; ARTICLE; CATTLE; CHEMISTRY; METABOLISM; MOLECULAR GENETICS; NUCLEAR MAGNETIC RESONANCE;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; CALCIUM; CALCIUM-BINDING PROTEIN, VITAMIN D-DEPENDENT; CARBON ISOTOPES; CATTLE; HYDROGEN; MOLECULAR SEQUENCE DATA; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR;

EID: 79952441586     PISSN: 18742718     EISSN: 1874270X     Source Type: Journal    
DOI: 10.1007/s12104-010-9272-3     Document Type: Article

References (40)

1. 13C NMR spectroscopy: application to apo calmodulin J Am Chem Soc 129 15805 15813 10.1021/ja0721824
2. A Bax M Ikura LE Kay DA Torchia R Tschudin 1990 Comparison of different modes of two-dimensional reverse-correlation nmr for the study of proteins J Magn Reson 86 304 318
3. J Cavanagh AG Palmer PE Wright M Rance 1991 Sensitivity improvement in proton-detected two-dimensional heteronuclear relay spectroscopy J Magn Reson 91 429 436
4. S Christakos C Gabrielides WB Rothen 1989 Vitamin D-dependent calcium binding proteins: chemistry, distribution, functional considerations, and molecular biology Endocr Rev 10 3 26 10.1210/edrv-10-1-3 (Pubitemid 19156365)
5. F Delaglio S Grzesiek GW Vuister G Zhu J Pfeifer A Bax 1995 NMRpipe-a multidimensional spectral processing system based on unix pipes J Biomol NMR 6 277 293 10.1007/BF00197809
6. PJA Erbel K Barr N Gao GJ Gerwig PD Rick KH Gardner 2003 Identification and biosynthesis of cyclic enterobacterial common antigen in escherichia coli J Bacteriol 185 1995 2004 10.1128/JB.185.6.1995-2004.2003 (Pubitemid 36297900)
7. SW Fesik ERP Zuiderweg 1990 Heteronuclear three-dimensional nmr-spectroscopy of isotopically labeled biological macromolecules Q Rev Biophys 23 97 131 10.1017/S0033583500005515
8. Goddard TD, Kneller DG (2003) SPARKY 3. University of California, San Francisco
9. M Ikura 1996 Calcium binding and conformational response in EF-hand proteins Trends in Biochem Sci 21 14 17 (Pubitemid 26031860)
10. M Ikura LE Kay A Bax 1991 Improved three-dimensional 1H-13C-1H correlation spectroscopy of a 13C-labeled protein using constant-time evolution J Biomol NMR 1 299 304 10.1007/BF01875522
11. LE Kay M Ikura A Bax 1990 Proton proton correlation via carbon carbon couplings-a three-dimensional NMR approach for the assignment of aliphatic resonances in proteins labeled with carbon-13 J Am Chem Soc 112 888 889 10.1021/ja00158a070 (Pubitemid 20093847)
12. LE Kay M Ikura R Tschudin A Bax 1990 Three-dimensional triple-resonance NMR-spectroscopy of isotopically enriched proteins J Magn Reson 89 496 514
13. 13C uniformly labeled proteins J Biomol NMR 9 409 422 10.1023/A:1018354712430 (Pubitemid 127505402)
14. 9k J Mol Biol 231 711 734 10.1006/jmbi.1993.1322 (Pubitemid 23211310)
15. J Kordel DA Pearlman WJ Chazin 1997 Protein solution structure calculations in solution: solvated molecular dynamics refinement of calbindin D9 k J Biomol NMR 10 231 243 10.1023/A:1018383102870 (Pubitemid 127504669)
16. RH Kretsinger CE Nockolds 1973 Carp muscle calcium-binding protein: II. Structure determination and general description J Biol Chem 248 3313 3326
17. TM Logan ET Olejniczak RX Xu SW Fesik 1993 A general-method for assigning NMR-spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments J Biomol NMR 3 225 231 10.1007/BF00178264
18. F Löhr VV Rogov M Shi F Bernhard V Dötsch 2005 Triple-resonance methods for complete resonance assignment of aromatic protons and directly bound heteronuclei in histidine and tryptophan residues J Biomol NMR 32 309 328 10.1007/s10858-005-1195-4 (Pubitemid 41511512)
19. 2O, using pulsed-field gradients J Magn Reson Series B 102 242 244 10.1006/jmrb.1993.1093
20. D Marion PC Driscoll LE Kay PT Wingfield A Bax AM Gronenborn GM Clore 1989 Overcoming the overlap problem in the assignment of proton nmr spectra of larger proteins by use of three-dimensional heteronuclear proton and nitrogen hartmann-hahn multiple quantum coherence and nuclear overhauser multiple quantum coherence spectroscopy-application to interleukin 1.beta Biochemistry 28 6150 6156 10.1021/bi00441a004 (Pubitemid 19202002)
21. D Marion LE Kay SW Sparks DA Torchia A Bax 1989 Three dimensional heteronuclear NMR of nitrogen-15 labeled proteins J Am Chem Soc 111 1515 1517 10.1021/ja00186a066
22. DR Muhandiram LE Kay 1994 Gradient-enhanced triple-resonance 3-dimensional NMR experiments with improved sensitivity J Magn Reson Series B 103 203 216 10.1006/jmrb.1994.1032
23. Y Oda T Yamazaki K Nagayama S Kanaya Y Kuroda H Nakamura 1994 Individual ionization-constants of all the carboxyl groups in ribonuclease HI from Escherichia-Coli determined by NMR Biochemistry 33 5275 5284 10.1021/bi00183a034 (Pubitemid 24150996)
24. 13Cα chemical shifts and protein backbone conformation J Am Chem Soc 119 8070 8075 10.1021/ja9707466 (Pubitemid 27380269)
25. AG Palmer J Cavanagh PE Wright M Rance 1991 Sensitivity improvement in proton-detected two-dimensional heteronuclear correlation NMR-spectroscopy J Magn Reson 93 151 170
26. AG Palmer WJ Fairbrother J Cavanagh PE Wright M Rance 1992 Improved resolution in three-dimensional constant-time triple resonance NMR spectroscopy of proteins J Biomol NMR 2 103 108 10.1007/BF02192804
27. SC Panchal NS Bhavesh RV Hosur 2001 Improved 3D triple resonance experiments, HNN and HN(C)N, for HN and 15 N sequential correlations in (13C, 15N) labeled proteins: application to unfolded proteins J Biomol NMR 20 135 147 10.1023/A:1011239023422 (Pubitemid 32677757)
28. R Powers AM Gronenborn GM Clore A Bax 1991 3-Dimensional triple-resonance NMR of 13C/15N enriched proteins using constant-time evolution J Magn Reson 94 209 213
29. JJ Prompers A Groenewegen CW Hilbers HAM Pepermans 1998 Two-dimensional NMR experiments for the assignment of aromatic side chains in 13C-labeled proteins J Magn Reson 130 68 75 1998JMagR.130...68P 10.1006/jmre.1997.1277 (Pubitemid 128450514)
30. DM Szebenyi K Moffat 1986 The refined structure of vitamin D-dependent calcium-binding protein from bovine intestine. Molecular details, ion binding, and implications for the structure of other calcium-binding proteins J Biol Chem 261 8761 8777 (Pubitemid 17205075)
31. 9k. Humana Press inc, Totowa
32. M Tollinger JD Forman-Kay LE Kay 2002 Measurement of side-chain carboxyl pKa values of glutamate and aspartate residues in an unfolded protein by multinuclear NMR spectroscopy J Am Chem Soc 124 5714 5717 10.1021/ja020066p (Pubitemid 34533509)
33. H Vis R Boelens M Mariani R Stroop CE Vorgias KS Wilson R Kaptein 1994 1H, 13C, and 15 N resonance assignments and secondary structure analysis of the HU protein from Bacillus stearothermophilus using two- and three-dimensional double- and triple-resonance heteronuclear magnetic resonance spectroscopy Biochemistry 33 14858 14870 10.1021/bi00253a025
34. 13C decoupling J Magn Reson 98 428 435
35. T Yamazaki JD Forman-Kay LE Kay 1993 2-Dimensional NMR experiments for correlating carbon-13Beta and proton-delta/epsilon chemical-shifts of aromatic residues in 13C-labeled proteins via scalar couplings J Am Chem Soc 115 11054 11055 10.1021/ja00076a099
36. T Yamazaki M Yoshida K Nagayama 1993 Complete assignments of magnetic resonances of ribonuclease-H from escherichia coli by double-resonance and triple-resonance 2D and 3D NMR spectroscopies Biochemistry 32 5656 5669 10.1021/bi00072a023 (Pubitemid 23178533)
37. 2H-labeled proteins-application to a 37-kDa trp repressor DNA complex J Am Chem Soc 116 6464 6465 10.1021/ja00093a069
38. 1H chemical shifts in proteins J Am Chem Soc 117 3556 3564 10.1021/ja00117a025
39. 15N resonance assignments of the N-terminal Sh3 Domain of drk in folded and unfolded states using enhanced-sensitivity pulsed-field gradient NMR techniques J Biomol NMR 4 845 858 10.1007/BF00398413
40. ERP Zuiderweg L Zeng B Brutscher RC Morshauser 1996 Band-selective hetero- and homonuclear cross-polarization using trains of shaped pulses J Biomol NMR 8 147 160 10.1007/BF00211161 (Pubitemid 126706784)