Triple-resonance methods for complete resonance assignment of aromatic protons and directly bound heteronuclei in histidine and tryptophan residues

Journal of Biomolecular NMR

Volumn 32, Issue 4, 2005, Pages 309-328

  Löhr, Frank ^a   Rogov, Vladimir V ^a   Shi, Meichen ^a   Bernhard, Frank ^a   Dötsch, Volker ^a  

^a GOETHE UNIVERSITY   (Germany)

Author keywords

Amino acid type selectivity; CC TOCSY; hCdc5; Multiple relay; Protein sequence specific assignments; RcsC PR

Indexed keywords

AMIDE; AMINO ACID; AROMATIC COMPOUND; CARBON 13; HISTIDINE; IMIDAZOLE; LIGAND; NITROGEN 15; PHENYLALANINE; PROTEIN; PROTON; TRYPTOPHAN;

ARTICLE; ISOTOPE LABELING; MAGNETISM; MOLECULAR WEIGHT; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PH; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTON NUCLEAR MAGNETIC RESONANCE; PROTON TRANSPORT; RELAXATION TIME; RESIDUE ANALYSIS;

AMIDES; AMINO ACIDS, AROMATIC; BACILLUS; CARBON ISOTOPES; CELL CYCLE PROTEINS; DESULFOVIBRIO VULGARIS; DEUTERIUM; ENDO-1,4-BETA XYLANASES; ESCHERICHIA COLI PROTEINS; FLAVODOXIN; HISTIDINE; HUMANS; MULTIENZYME COMPLEXES; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PHOSPHOPROTEIN PHOSPHATASE; PROTEIN KINASES; PROTEIN STRUCTURE, TERTIARY; PROTEINS; PROTONS; RECOMBINANT PROTEINS; RIBONUCLEASE T1; TRYPTOPHAN;

EID: 27244451944     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-005-1195-4     Document Type: Article

References (76)

1. M. Alei Jr. L.O. Morgan W.E. Wageman and T.W. Whaley 1980 J. Am. Chem. Soc. 102 2881-2887 10.1021/ja00529a002
2. A. Bax G.M. Clore P.C. Driscoll A.M. Gronenborn M. Ikura and L.E. Kay 1990a J. Magn. Reson. 87 620-627
3. A. Bax G.M. Clore and A.M. Gronenborn 1990b J. Magn. Reson. 88 425-431
4. A. Bax and S. Grzesiek 1993 Acc. Chem. Res. 26 131-138 10.1021/ ar00028a001
5. A. Bax S.W. Sparks and D.A. Torchia 1988 J. Am. Chem. Soc. 110 7926-7927 10.1021/ja00231a081
6. M. Betz F. Löhr H. Wienk and H. Rüterjans 2002 J. Biomol. NMR 23 333-334 10.1023/A:1020248110530 12398358
7. M. Betz F. Löhr H. Wienk and H. Rüterjans 2004 Biochemistry 43 5820-5831 10.1021/bi049948m 15134456
8. M. Billeter W. Braun and K. Wüthrich 1982 J. Mol. Biol. 155 321-346 10.1016/0022-2836(82)90008-0 7077676
9. F. Blomberg W. Maurer and H. Rüterjans 1977 J. Am. Chem. Soc. 99 8149-8159 10.1021/ja00467a005
10. J. Boyd and N. Soffe 1989 J. Magn. Reson. 85 406-413
11. B. Brutscher J. Boisbouvier A. Pardi D. Marion and J.-P. Simorre 1998 J. Am. Chem. Soc. 120 11845-11851 10.1021/ja982853l
12. J. Cavanagh W.J. Fairbrother A.G. Palmer III and N.J. Skelton 1996 Protein NMR Spectroscopy, Principles and Practice Academic Press, Inc. San Diego
13. J. Cavanagh A.G. Palmer III P.E. Wright and M. Rance 1991 J. Magn. Reson. 91 429-436
14. T. Carlomagno M. Maurer M. Sattler M.G. Schwendinger S.J. Glaser and C. Griesinger 1996 J. Biomol. NMR 8 161-170 10.1007/BF00211162
15. V.A. Daragan and K.H. Mayo 1997 Prog. Nucl. Magn. Res. Spectrosc. 31 63-105 10.1016/S0079-6565(97)00006-X
16. F. Delaglio S. Grzesiek G.W. Vuister G. Zhu J. Pfeifer and A. Bax 1995 J. Biomol. NMR 6 277-293 10.1007/BF00197809 8520220
17. L. Emsley and G. Bodenhausen 1990 Chem. Phys. Lett. 165 469-476 10.1016/ 0009-2614(90)87025-M
18. S.W. Fesik H.L. Eaton E.T. Olejniczak E.R.P. Zuiderweg L.P. McIntosh and F.W. Dahlquist 1990 J. Am. Chem. Soc. 112 886-888 10.1021/ja00158a069
19. H. Geen and R. Freeman 1991 J. Magn. Reson. 93 93-141
20. S. Grzesiek and A. Bax 1992 J. Am. Chem. Soc. 114 6291-6293 10.1021/ ja00042a003
21. S. Grzesiek J. Anglister and A. Bax 1993 J. Magn. Reson. B 101 114-119 10.1006/jmrb.1993.1019
22. S. Grzesiek and A. Bax 1993a J. Am. Chem. Soc. 115 12593-12594 10.1021/ ja00079a052
23. S. Grzesiek and A. Bax 1993b J. Biomol. NMR 3 185-204
24. S. Grzesiek and A. Bax 1995 J. Am. Chem. Soc. 117 6527-6531 10.1021/ ja00129a016
25. E. Hoffmann and H. Rüterjans 1988 Eur. J. Biochem. 177 539-560 10.1111/j.1432-1033.1988.tb14406.x 3143569
26. W. Jahnke and H. Kessler 1994 J. Biomol. NMR 4 735-740 10.1007/ BF00404281 7919957
27. L.E. Kay 1995 Prog. Biophys. Molec. Biol. 63 277-299 10.1016/ 0079-6107(95)00007-0
28. L.E. Kay M. Ikura and A. Bax 1990 J. Am. Chem. Soc. 112 888-889 10.1021/ ja00158a070
29. L.E. Kay P. Keifer and T. Saarinen 1992 J. Am. Chem. Soc. 114 10663-10665 10.1021/ja00052a088
30. M. Knauf F. Löhr G.P. Curley P. O'Farrell S.G. Mayhew F. Müller and H. Rüterjans 1993 Eur. J. Biochem. 213 167-184 10.1111/j.1432-1033.1993.tb17746.x 8477691
31. E Kupče J. Boyd and I.D. Campbell 1995 J. Magn. Reson. B106 300-303
32. X.-H. Lei X Shen X.-Q. Xu and H.S. Bernstein 2000 J. Cell Sci. 113 4523-4531 11082045
33. G. Lippens C. Dhalluin and J.-M. Wieruszeski 1995 J. Biomol. NMR 5 327-331
34. T.M. Logan E.T. Olejniczak R.X. Xu and S.W. Fesik 1992 FEBS Lett. 314 413-418 10.1016/0014-5793(92)81517-P 1281793
35. T.M. Logan E.T. Olejniczak R.X. Xu and S.W. Fesik 1993 J. Biomol. NMR 3 225-231 10.1007/BF00178264 8477187
36. F. Löhr V. Katsemi M. Betz J. Hartleib and H. Rüterjans 2002 J. Biomol. NMR 22 153-164 10.1023/A:1014271204953 11883776
37. F. Löhr and H. Rüterjans 1996 J. Magn. Reson. B112 259-268
38. B.A. Lyons and G.T. Montelione 1993 J. Magn. Reson. B101 206-209
39. D. Marion M. Ikura R. Tschudin and A. Bax 1989 J. Magn. Reson. 85 393-399
40. H. Matsuo E Kupče H. Li and G. Wagner 1996 J. Magn. Reson. B111 194-198
41. A Mohebbi and A.J. Shaka 1991 Chem. Phys. Lett. 178 374-378 10.1016/ 0009-2614(91)90268-E
42. G.T. Montelione B.A. Lyons S.D. Emerson and M. Tashiro 1992 J. Am. Chem. Soc. 114 10974-10975 10.1021/ja00053a051
43. G.A. Morris and R. Freeman 1979 J. Am. Chem. Soc. 101 760-762 10.1021/ ja00497a058
44. D.R. Muhandiram and L.E. Kay 1994 J. Magn. Reson. B 103 203-216 10.1006/ jmrb.1994.1032
45. G. Otting and E. Liepinsh 1995 J. Biomol. NMR 5 420-426 10.1007/ BF00182286
46. S. Patt 1992 J. Magn. Reson. 96 94-102
47. J.G. Pelton D.A. Torchia N.D. Meadow and S. Roseman 1993 Protein Sci. 2 543-558 8518729
48. K. Pervushin R. Riek G. Wider and K. Wüthrich 1997 Proc. Natl. Acad. Sci. USA 94 12366-12371 10.1073/pnas.94.23.12366 9356455
49. K. Pervushin R. Riek G. Wider and K. Wüthrich 1998 J. Am. Chem. Soc. 120 6394-6400 10.1021/ja980742g
50. W. Peti J. Norcross G. Eldridge and M. O'Neill-Johnson 2004 J. Am. Chem. Soc. 126 5873-5878 10.1021/ja039779d 15125680
51. M. Piotto V. Saudek and V. Sklenář 1992 J. Biomol. NMR 2 661-665 10.1007/BF02192855 1490109
52. J.J. Prompers A. Groenewegen R.C. Schaik van H.A.M. Pepermans and C. Hilbers 1997 Protein Sci. 6 2375-2384 9385640
53. J.J. Prompers A. Groenewegen C.W. Hilbers and H.A.M. Pepermans 1998 J. Magn. Reson. 130 68-75 10.1006/jmre.1997.1277 9469899
54. V.V. Rogov F. Bernhard F. Löhr and V. Dötsch 2004 J. Mol. Biol. 343 1035-1048 10.1016/j.jmb.2004.08.096 15476819
55. E. Sabini G. Sulzenbacher M. Dauter Z. Dauter P.L. Jorgensen M. Schulein C. Dupont G.J. Davies and K.S. Wilson 1999 Chem. Biol. 6 483-492 10.1016/ S1074-5521(99)80066-0 10381409
56. M. Salzmann G. Wider K. Pervushin H. Senn and K. Wüthrich 1999 J. Am. Chem. Soc. 121 844-848 10.1021/ja9834226
57. J.M. Schmidt H. Thüring A. Werner H. Rüterjans R. Quaas and U. Hahn 1991 Eur. J. Biochem. 197 643-653 10.1111/ j.1432-1033.1991.tb15954.x 1903106
58. M. Schubert M. Smalla P. Schmieder and H. Oschkinat 1999 J. Magn. Reson. 141 34-43 10.1006/jmre.1999.1881 10527741
59. M. Schubert P. Schmieder and H. Oschkinat 2001a J. Magn. Reson. 148 61-72 10.1006/jmre.2000.2222
60. M. Schubert P. Schmieder and H. Oschkinat 2001b J. Magn. Reson. 153 186-192 10.1006/jmre.2001.2447
61. B.R. Seavey E.A. Farr W.M. Westler and J.L. Markley 1991 J. Biomol. NMR 1 217-236 10.1007/BF01875516 1841696
62. A.J. Shaka P.B. Barker and R. Freeman 1985 J. Magn. Reson. 64 547-552
63. A.J. Shaka C.J. Lee and A. Pines 1988 J. Magn. Reson. 77 274-293
64. N. Shimba Z. Serber R. Ledwidge S.M. Miller C.S. Craik and V. Dötsch 2003 Biochemistry 42 9227-9234 10.1021/bi0344679 12885258
65. N. Shimba H. Takahashi M. Sakakura I. Fujii and I. Shimada 1998 J. Am. Chem. Soc. 120 10988-10989 10.1021/ja982153g
66. V. Sklenář R.D. Peterson M.R. Rejante E. Wang and J. Feigon 1993a J. Am. Chem. Soc. 115 12181-12182 10.1021/ja00078a073
67. V. Sklenář M. Piotto R. Leppik and V. Saudek 1993b J. Magn. Reson. A102 241-245 10.1006/jmra.1993.1098
68. N. Spitzner F. Löhr S. Pfeiffer A. Koumanov A. Karshikoff and H. Rüterjans 2001 Eur. Biophys. J. 30 186-197 10.1007/s002490100138 11508838
69. J. Stonehouse G.L. Shaw J. Keeler and E.D. Laue 1994 J. Magn. Reson. A 107 178-184 10.1006/jmra.1994.1066
70. J.L. Sudmeier E.L. Ash U.L. Günther X. Luo P.A. Bullock and W.W. Bachovchin 1996 J. Magn. Reson. B113 236-247
71. G. Wagner and K. Wüthrich 1982 J. Mol. Biol. 155 347-366 10.1016/ 0022-2836(82)90009-2 6176717
72. M. Wittekind and L. Mueller 1993 J. Magn. Reson. B101 201-205
73. K. Wüthrich 1986 NMR of Proteins and Nucleic Acids Wiley New York, NY
74. T. Yamazaki J.D. Forman-Kay and L.E. Kay 1993 J. Am. Chem. Soc. 115 11054-11055 10.1021/ja00076a099
75. O. Zerbe T. Szyperski M. Ottiger and K. Wüthrich 1996 J. Biomol. NMR 7 99-106
76. G. Zhu and A. Bax 1990 J. Magn. Reson. 90 405-410