Comparison between conventional methods, ChromAgar Candida® and PCR method for the identification of Candida species in clinical isolates;Comparación entre métodos convencionales, ChromAgar Candida® y el método de la PCR para la identificación de especies de Candida en aislamientos clínicos

Revista Iberoamericana de Micologia

Volumn 28, Issue 1, 2011, Pages 36-42

  Estrada Barraza, Deyanira ^a   Dávalos Martínez, Arturo ^a   Flores Padilla, Luis ^b   Mendoza De Elias, Roberto ^a   Sánchez Vargas, Luis Octavio ^a  

^a UNIVERSIDAD AUTÓNOMA DE CIUDAD JUÁREZ   (Mexico)

^b INSTITUTO MEXICANO DEL SEGURO SOCIAL   (Mexico)

Author keywords

ATB ID32C; Candida; Clinical isolates; Identification; Polymerase chain reaction

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING); INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2; RIBOSOME RNA;

ARTICLE; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA KRUSEI; CANDIDA TROPICALIS; CONTROLLED STUDY; FUNGUS CULTURE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; INTERMETHOD COMPARISON; MORPHOGENESIS; NONHUMAN; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY;

AGAR; CANDIDA; CANDIDIASIS; CHROMOGENIC COMPOUNDS; CULTURE MEDIA; DNA TOPOISOMERASES, TYPE II; DNA, FUNGAL; FUNGAL PROTEINS; FUNGEMIA; GENES, FUNGAL; HUMANS; MORPHOGENESIS; MYCOLOGY; POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPECIES SPECIFICITY; VIRULENCE;

CANDIDA; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA TROPICALIS; ZEA MAYS;

EID: 79952312696     PISSN: 11301406     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.riam.2010.11.003     Document Type: Article

References (42)

1. Ahmad S., Khan Z., Mustafa A.S., Khan Z.U. Seminested PCR for diagnosis of candidemia: comparison with culture, antigen detection, and biochemical methods for species identification. J Clin Microbiol. 2002, 40:2483-2489.
2. Alshahni M., Kakimura K., Yamada T., Satoh K. Direct colony PCR of several medically important fungi using Ampdirec plus. Jpn J Infec Dis. 2009, 62:164-167.
3. Banerjee U. Progress in diagnosis of opportunistic infections in HIV/AIDS. Indian J Med Res. 2005, 121:395-406.
4. Betremieux P., Chevrier S., Quindos G., Sullivan D., Polonelli L., Guiguen C. Use of DNA fingerprinting and biotyping methods to study a Candida albicans outbreak in a neonatal intensive care unit. Pediatr Infect Dis J. 1994, 13:899-905.
5. Buchaille L., Freydiere A.M., Guinet R., Gille Y. Evaluation of six commercial systems for identification of medically important yeast. Eur J Clin Microbiol Infect Dis. 1998, 17:479-488.
6. Cárdenes C.D., Carrillo A.J., Arias A., Rodriguez A.C., Torres L.A. Comparison of Albicans ID2_ agar plate with the germ tube for presumptive identification of Candida albicans. Diag Microbiol Infec Dis. 2002, 42:181-185.
7. Cárdenes C.D., Carrillo-Muñoz A.J., Arias A., Rodríguez-Alvarez C., Torres-Lana A., Sierra A., et al. Comparative evaluation of four commercial tests for presumptive identification of Candida albicans. J Microbiol Methods. 2004, 59:293-297.
8. Carrillo-Esper R., Carrillo-Córdova J.R., Carrillo-Córdova L.D. Estudio epidemiológico de la sepsis en unidades de terapia intensiva mexicanas. Cirugía y Cirujanos de la Academia Mexicana de Cirugía. 2009, 77:301-308.
9. Chang H.C., Leaw S.N., Huang A.H., Wu T.L., Chang T.C. Rapid identification of yeasts in positive blood cultures by a multiplex PCR method. J Clin Microbiol. 2001, 39:3466-3471.
10. Chen Y.C., Eisner J.D., Kattar M.M., Rassoulian S.L., LaFe K., Yarfitz S.L., et al. Identification of medically important yeasts using PCR-based detection of DNA sequence polymorphisms in the internal transcribed spacer 2 region of the rRNA genes. J Clin Microbiol. 2000, 38:2302-2310.
11. Espinel-Ingroff A., Stockman L., Roberts G., Pincus D., Pollack J., Marler J. Comparison of RapID yeast plus system with API 20C system for identification of common, new, and emerging yeast pathogens. J Clin Microbiol. 1998, 36:883-886.
12. Garey K.W., Rege M., Pai M.P., Mingo D.E., Suda K.J., Turpin R.S., et al. Time to initiation of fluconazole therapy impacts mortality in patients with candidemia: a multi-institutional study. Clin Infect Dis. 2006, 43:25-31.
13. Glöckner A., Karthaus M. Current aspects of invasive candidiasis and aspergillosis in adult intensive care patients. Mycoses. En prensa 2010.
14. González G.M., Elizondo M., Ayala J. Trends in species distribution and susceptibility of bloodstream isolates of Candida collected in Monterrey. Mexico, to seven antifungal agents: results of a 3-year (2004 to 2007) surveillance study. J Clin Microbiol. 2008, 46:2902-2905.
15. Kamiya A., Kikichi A., Tomita Y., Kanbe T. Epidemiological study of Candida species in cutaneous candidiasis bases on PCR using a primer mix specific for the DNA topoisomerase II gene. J Dermatol Science. 2005, 37:21-28.
16. Kanbe T., Horii T., Arishima T., Ozeki M., Kikuchi A. PCR-based identification on for pathogenic Candida species using primer mixes specific to Candida DNA topoisomerase II genes. Yeast. 2002, 19:973-989.
17. Katoa M., Ozekib M., Kikuchib A., Kanbe T. Phylogenetic relationship and mode of evolution of yeast DNA topoisomerase II gene in the pathogenic Candida species. Gene. 2001, 272:275-281.
18. Khlif M., Sellami H., Sellami A., Makni F., Cheikhrouhou F., Chelly H., et al. Detection and identification of Candida sp. by PCR in candidemia diagnosis. J Mycol Medicale. 2007, 17:256-260.
19. Khlif M., Sellami A., Sellami H., Makni F., Ayadi A. Candida dubbliniensis: Identification methods and epidemiologic implication. Pathol Biol. En prensa 2008.
20. Lau A., Halliday C., Chen S., Playford G., Stanley K., Sorrell T. Comparison of whole blood, serum, and plasma for early detection of candidemia by multiplex-tandem PCR. J Clin Microbiol. 2010, 48:811-816.
21. Leaw S.N., Chang H.C., Sun H.F., Barton R., Bouchara J.P., Chang T.C. Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions. J Clin Microbiol. 2006, 44:693-699.
22. Liguori G., Lucariello A., Colella G., De Luca A., Marinelli P. Rapid identification of Candida species in oral rinse solutions by PCR. J Clin Pathol. 2007, 60:1035-1039.
23. Lopes M.M., Silva D., Freitas G., Tenreiro R. Simultaneous identification and typing of Candida species by MSP-PCR and AFLP: Study of clinical isolates from a Portuguese pediatric hospital. J Mycol Med. 2007, 17:157-167.
24. Luo G., Mitchell T.C. Rapid identification of pathogene fungi directly from cultures by using multiplex PCR. J Clin Microbiol. 2002, 40:2860-2865.
25. Marr K.A. Invasive Candida infections: the changing epidemiology. Oncology. 2004, 18(Suppl 13):S9-S14.
26. Miyakawa Y., Ozawa T. Simple method to accurately differentiate Candida albicans isolates concurrently using polymorphic patterns of PCR-amplified, species-specific nuclear and mitochondrial targets. Curr Microbiol. 2009, 58:164-169.
27. Morace G., Pagano L., Sanguinetti M., Posteraro B., Mele L., Equitani F., et al. PCR-restriction enzyme analysis for detection of Candida DNA in blood from febrile patients with hematological malignancies. J Clin Microbiol. 1999, 37:1871-1875.
28. Niesters H.G., Goessens W.H., Meis J.F., Quint W.G. Rapid, polymerase chain reaction-based identification assays for Candida species. J Clin Microbiol. 1993, 31:904-910.
29. a ed.). Rev Iberoam Micol. 2001.;1:1(cap.4)-9(cap.10).
30. Pemán M., Sterling J.B., Gaspari A. The painful purple digit: an alarming complication of Candida albicans antigen treatment of recalcitrant warts. Dermatitis. 2005, 16:38-40.
31. Ramani R., Gromadzki S., Pincus D.H., Salkin I.F., Chaturvedi V. Efficacy of API 20C and ID 32C systems for identification of common and rare clinical yeast isolates. J Clin Microbiol. 1998, 36:3396-3398.
32. Rodriguez D., Almirante B., Park B.J., Cuenca-Estrella M., Planes A.M., Sanchez F., et al. Candidemia in neonatal intensive care units: Barcelona, Spain. Pediatr Infec Dis J. 2006, 25:224-229. Barcelona Candidemia Project Study Group.
33. San Miguel L.G., Cobo J., Otheo E., Sánchez-Sousa A., Abraira V., Moreno S. Secular trends of candidemia in a large tertiary-care hospital from 1998 to 2000: emergence of Candida parapsilosis. Infec Control Hosp Epidemiol. 2005, 26:548-552.
34. Sandven P., Bevanger L., Digranes A., Haukland H., Mannsaker T., Gaustad P. Candidemia in Norway (1991 to 2003): results from a Nationwide Study. J Clin Microbiol. 2006, 44:1977-1981. The Norwegian Yeast Study Group.
35. Saville S.P., Thomas D.P., Lopez-Ribot J.L. Use of genome information for the study of the pathogenesis of fungal infections and the development of diagnostic tools. Rev Iberoam Micol. 2005, 22:238-241.
36. Schabereiter-Gurtner C., Selitsch B., Rotter M.L., Hirschl A.M., Willinger B. Development of novel real-time PCR assays for detection and differentiation of eleven medically important Aspergillus and Candida species in clinical specimens. J Clin Microbiol. 2007, 45:906-914.
37. Steffan P., Vazquez J.A., Boikov D., Xu C., Sobel J.D., Akins R.A. Identification of Candida species by randomly amplified polymorphic DNA fingerprinting of colony lysates. J Clin Microbiol. 1997, 35:2031-2039.
38. Taylor J., Jacobson D., Fisher M. The evolution of asexual fungi: reproduction, speciation and classification. Annu Rev Phytopathol. 1999, 37:197-246.
39. Thorn J.L., Gilchrist K.B., Sobonya R.E., Gaur N.K., Lipke P.N., Klotz S.A. Postmortem candidaemia: marker of disseminated disease. J Clin Pathol. 2010, 63:337-340.
40. Vermitsky J.P., Self M.J., Chadwick S.G., Trama J.P., Adelson M.E., Mordechai E., et al. Survey of vaginal-flora Candida species isolates from women or different age groups by use of species-specific PCR detection. J Clin Microbiol. 2008, 46:1501-1503.
41. Viviani M.A., Cogliati M., Esposto M.C., Prigitano A., Tortorano A.M. Four-year persistence of a single Candida albicans genotype causing bloodstream infections in a surgical ward proven by multilocus sequence typing. J Clin Microbiol. 2006, 44:218-221.
42. White P.L., Archer A.E., Barnes R.A. Comparison of non-culture-based methods for detection of systemic fungal infections, with an emphasis on invasive Candida infections. J Clin Microbiol. 2005, 43:2181-2187.