Simultaneous identification and typing of Candida species by MSP-PCR and AFLP: Study of clinical isolates from a Portuguese pediatric hospital

Journal de Mycologie Medicale

Volumn 17, Issue 3, 2007, Pages 157-167

  Lopes, M M ^a   Silva, D ^b   Freitas, G ^a   Tenreiro, R ^b  

^a RESEARCH INSTITUTE FOR MEDICINES IMED ULISBOA   (Portugal)

^b UNIVERSITY OF LISBON   (Portugal)

Author keywords

AFLP; Candida spp.; Identification; MSP PCR; Typing

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CANDIDA ALBICANS; CANDIDA PARAPSILOSIS; CANDIDA TROPICALIS; CLINICAL ARTICLE; CONTROLLED STUDY; COST BENEFIT ANALYSIS; HEALTH CARE PERSONNEL; HUMAN; PEDIATRIC HOSPITAL; POLYMERASE CHAIN REACTION;

CANDIDA; CANDIDA ALBICANS; CANDIDA PARAPSILOSIS; CANDIDA TROPICALIS;

EID: 34848922730     PISSN: 11565233     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mycmed.2007.07.003     Document Type: Article

References (44)

1. Abd-Elsalam K.A., Guo J.R., Schnieder F., Asran-Amal A.M., and Verreet J.A. Comparative assessment of genotyping methods for study genetic diversity of Fusarium oxysporum isolates. Pol J Microbiol 53 (2004) 167-174
2. Arnavielhe S., de Meeus T., Blancard A., Mallie M., Renaud F., and Bastide J.M. Multicentric genetic study of Candida albicans isolates from non-neutropenic patients using MLEE typing: population structure and mode of reproduction. Mycoses 43 (2000) 109-117
3. Ball L.M., Bes M.A., Theelen B., Boekhout T., Egeler R.N.M., and Kuijper E.J. Significance of amplified fragment length polymorphism in identification and epidemiological examination of Candida species colonization in children undergoing allogeneic stem cell transplantation. J Clin Microbiol 42 (2004) 1673-1679
4. Boldo X.M., Villa-Tanaca L., Zúñiga G., and Hernandez-Rodriguez C. Genetic diversity among clinical isolates of Candida glabrata analyzed by randomly amplified polymorphic DNA and multilocus enzyme electrophoresis analyses. J Clin Microbiol 41 (2003) 4799-4804
5. Borst A., Theelen B., Reinders E., Boekhout T., Fluit A.C., and Savelkoul P.H. Use of amplified fragment length polymorphism analysis to identify medically important Candida spp., including C. dubliniensis. J Clin Microbiol 41 (2003) 1357-1362
6. Bougnoux M.E., Diogo D., François N., Sendid B., Veirmeire S., Colombel J.F., et al. Multilocus sequence typing reveals intrafamilial transmission and microevolutions of Candida albicans isolates from the human digestive tract. J Clin Microbiol 44 (2006) 1810-1820
7. Boumedine K.S., and Rodolakis A. AFLP allows the identification of genomic markers of ruminant Chlamydia psittaci strains useful for typing and epidemiological studies. Res Microbiol 149 (1998) 735-744
8. Buscot F., Wipf D., Battista C., Munch J.C., Botton B., and Martin F. DNA polymorphism in morels: PCR/RFLP analysis of the ribosomal DNA spacers and microsatellite-primed PCR. Mycol Res 100 (1996) 63-71
9. Casali A.K., Goulart L., Silva L.K., Ribeiro A.M., Amaral A.A., Alves S.H., et al. Molecular typing of clinical and environmental Cryptococcus neoformans isolates in the Brazilian state Rio Grande do Sul. FEMS Yeast Res 3 (2003) 405-415
10. Chen K.W., Chen Y.C., Lo H.J., Odds F.C., Wang T.H., Lin Cy, et al. Multilocus sequence typing for analyses of clonality of Candida albicans strains in Taiwan. J Clin Microbiol 44 (2006) 2172-2178
11. Chen K.W., Lo H.J., Lin Y.H., and Li S.Y. Comparison of four molecular typing methods to assess genetic relatedness of Candida albicans clinical isolates in Taiwan. J Med Microbiol 54 (2005) 249-258
12. Colombo A.L., Melo A.S., Crespo Rosas R.F., Salomao R., Briones M., Hollis R.J., et al. Outbreak of Candida rugosa candidemia: an emerging pathogen that may be refractory to amphotericin B therapy. Diagn Microbiol Infect Dis 46 (2003) 253-257
13. Correia A., Sampaio P., Almeida J., and Pais C. Study of molecular epidemiology of candidiasis in Portugal by PCR fingerprinting of Candida clinical isolates. J Clin Microbiol 42 (2004) 5899-5903
14. Dalle F., Dumont L., Franco N., Mesmacque D., Caillot D., Bonnin P., et al. Genotyping of Candida albicans oral strains from healthy individuals by polymorphic microsatellite locus analysis. J Clin Microbiol 41 (2003) 2203-2205
15. D'Antonio D., Romano F., Pontieri E., Fioritoni G., Caracciolo C., Bianchini S., et al. Catheter-related candidemia caused by Candida lipolytica in a patient receiving allogeneic bone marrow transplantation. J Clin Microbiol 40 (2002) 1381-1386
16. De Zoysa A., and Efstratiou A. Use of amplified fragment length polymorphisms for typing Corynebaterium diphteriae. J Clin Microbiol 38 (2000) 3843-3845
17. Folkertsma R.T., Rouppe van der Voort J.N.A.M., de Groot K.E., van Zandvoort P.M., Schots A., Gommers F.J., et al. Gene pool similarities of potato cyst nematode populations assessed by AFLP analysis. Mol Plant Microbe Interact 9 (1996) 47-54
18. Gupta A.K., Boekhout T., Theelen B., Summerbell R., and Batra R. Identification and typing of Malassezia species by amplified fragment length polymorphism and sequence analyses of the internal transcribed spacer and large-subunit regions of ribosomal DNA. J Clin Microbiol 42 (2004) 4253-4260
19. Hunter P.R., and Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26 (1988) 2465-2466
20. Igreja R.P., Dos S., Lazera M., Wanke B., Gallardo M.C., Kidd S.E., et al. Molecular epidemiology of Cryptococcus neoformans isolates from AIDS patients of the Brazilian city, Rio de Janeiro. Med Mycol 42 (2004) 229-238
21. Lephart P., Ferrieri P., and Van Burik J.A. Reservoir of Candida albicans infection in a vascular bypass graft demonstrates a stable karyotype over six months. Med Mycol 42 (2004) 255-260
22. Lindstedt B., Heir E., Vardund T., Melby K.K., and Kapperud G. Comparative fingerprinting analysis of Campylobacter jejuni subsp. jejuni strains by amplified-fragment length polymorphism genotyping. J Clin Microbiol 38 (2000) 3379-3387
23. Longato S., and Bonfante P. Molecular identification of mycorrhizal fungi by direct amplification of microsatellite regions. Mycol Res 101 (1997) 425-432
24. Malgoire J.Y., Bertout S., Renaud F., Bastide J.M., and Mallié M. Typing of Saccharomyces cerevisiae clinical strains by using microsatellite sequence polymorphism. J Clin Microbiol 43 (2005) 1133-1137
25. Martinez M., López-Ribot J.L., Kirkpatrick W.R., Coco B.J., Bachmann S.P., and Patterson T.F. Replacement of Candida albicans with C. dubliniensis in human immunodeficiency virus-infected patients with oropharyngeal candidiasis treated with fluconazole. J Clin Microbiol 40 (2002) 3135-3139
26. Nedret Kocm A., Kocagoz S., Erdem F., and Gunduz Z. Outbreak of nosocomial fungemia caused by Candida glabrata. Mycoses 45 (2002) 470-475
27. Neyra E., Fonteyne P.A., Swinne D., Fauche F., Bustamante B., and Nolard N. Epidemiology of human sporotrichosis investigated by amplified fragment length polymorphism. J Clin Microbiol 43 (2005) 1348-1352
28. Parry M.F., Grant B., Yukna M., Adler-Klein D., McLeod G.X., Taddonuio R., et al. Candida osteomyelitis and diskitis after spinal surgery: an outbreak that implicates artificial nail use. Clin Infect Dis 32 (2001) 352-357
29. Posteraro B., Bruno S., Boccia S., Ruggiero A., Sanguinetti M., Spica V.R., et al. Candida parapsilosis bloodstream infections in pediatric oncology patients: results of an epidemiologic investigation. Infect Control Hosp Epidemiol 25 (2004) 641-645
30. Pujol C., Joly S., Lockhart S.R., Noel S., Tibayrenc M., and Soll D.R. Parity among the randomly amplified polymorphic DNA method, multilocus enzyme electrophoresis, and Soutern blot hybridization with the moderately repetitive DNA probe Ca3 for fingerprinting Candida albicans. J Clin Microbiol 35 (1997) 2348-2358
31. Pujol C., Pfaller M.A., and Soll D.R. Flucytosine resistance is restricted to a single genetic clade of Candida albicans. Antimicrob Agents Chemother 48 (2004) 262-266
32. Pujol C., Pfaller M., and Soll D.R. Ca3 fingerprinting of Candida albicans bloodstream isolates from the United states, Canada, South America, and Europe reveals a european clade. J Clin Microbiol 40 (2002) 2729-2740
33. Robles J.C., Koreen L., Park S., and Perlin D.S. Multilocus sequence typing is a reliable alternative method to DNA fingerprinting for discriminating strains of Candida albicans. J Clin Microbiol 42 (2004) 2480-2488
34. Roilides E., Farmaki E., Evdoridou J., Francesconi A., Kasai M., Filioti M., et al. Candida tropicalis in a neonatal intensive care unit: epidemiologic and molecular analysis of an outbreak of infection with an uncommon neonatal pathogen. J Clin Microbiol 41 (2003) 735-741
35. Rosehart K., Richards M.H., and Bidochka M.J. Microsatellite analysis of environmental and clinical isolates of the opportunist fungal pathogen Aspergillus fumigatus. J Med Microbiol 51 (2002) 1128-1134
36. Samaranayake Y.H., Samaranayake L.P., Dassanayake R.S., Yau J.Y., Tsang W.K., Cheung B.P., et al. Genotypic shuffling of sequential clones of Candida albicans in HIV-infected individuals with and without symptomatic oral candidiasis. J Med Microbiol 52 (2003) 349-359
37. Shin J.H., Park M.R., Song J.W., Shin D.H., Jung S.I., Cho D., et al. Microevolution of Candida albicans strains during catheter-related candidemia. J Clin Microbiol 42 (2004) 4025-4031
38. Thomas C.M., Vos P., Zabeau M., Jones D.A., Norcott K.A., Chandwick B.P., et al. Identification of amplified restriction fragment length polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum. Plant J 8 (1995) 785-794
39. Travis S.E., Maschinski J., and Keim P. An analysis of genetic variation in Astragalus cremnophylax var. cremnophylax, a critically endangered plant, using AFLP markers. Mol Ecol 5 (1996) 735-745
40. Treco D.A. Preparation of yeast DNA, RNA and proteins. In: Ausebel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., et al. (Eds). Current protocols in molecular biology (1989), Mass, USA 13.11.1-13.11.5
41. Viviani M.A., Cogliati M., Esposto M.C., Prigitano A., and Tortorano A.M. Four-year persistence of a single Candida albicans genotype causing bloodstream infections in a surgical ward proven by multilocus sequence typing. J Clin Microbiol 44 (2006) 218-221
42. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., et al. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23 (1995) 4407-4414
43. Yokoyama K., Biswas S.K., Miyaji M., and Nishimura K. Identification and phylogenetic relationship of the most common pathogenic Candida species inferred from mitochondrial cytochrome b gene sequences. J Clin Microbiol 38 (2000) 4503-4510
44. Zar J. Biostatistical analysis (1996), Prentice-Hall International, London