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Volumn 2, Issue 1, 2011, Pages 37-40

New discoveries linking transcription to DNA repair and damage tolerance pathways

Author keywords

DinB; Excision repair; NusA; Stress induced mutagenesis; Translesion DNA synthesis

Indexed keywords

4 NITROQUINOLINE 1 OXIDE; DNA POLYMERASE; MESYLIC ACID METHYL ESTER; NITROFURAL; PROTEIN NUSA; RNA POLYMERASE; TETRACYCLINE; TRANSCRIPTION ELONGATION FACTOR; UNCLASSIFIED DRUG;

EID: 79952271901     PISSN: 21541264     EISSN: 21541272     Source Type: Journal    
DOI: 10.4161/trns.2.1.14228     Document Type: Review
Times cited : (20)

References (48)
  • 2
    • 58649088239 scopus 로고    scopus 로고
    • Transcriptional modulator NusA interacts with translesion DNA polymerases in Escherichia coli
    • Cohen SE, Godoy VG, Walker GC. Transcriptional modulator NusA interacts with translesion DNA polymerases in Escherichia coli. J Bacteriol 2009; 191:665-72.
    • (2009) J Bacteriol , vol.191 , pp. 665-672
    • Cohen, S.E.1    Godoy, V.G.2    Walker, G.C.3
  • 3
    • 73449087603 scopus 로고    scopus 로고
    • The transcription elongation factor NusA is required for stress-induced mutagenesis in Escherichia coli
    • Cohen SE, Walker GC. The transcription elongation factor NusA is required for stress-induced mutagenesis in Escherichia coli. Curr Biol 2010; 20:80-5.
    • (2010) Curr Biol , vol.20 , pp. 80-85
    • Cohen, S.E.1    Walker, G.C.2
  • 4
    • 77957275003 scopus 로고    scopus 로고
    • Roles for the transcription elongation factor NusA in both DNA repair and damage tolerance pathways in Escherichia coli
    • Cohen SE, Lewis CA, Mooney RA, Kohanski MA, Collins JJ, Landick R, et al. Roles for the transcription elongation factor NusA in both DNA repair and damage tolerance pathways in Escherichia coli. Proc Natl Acad Sci USA 2010; 107:15517-22.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 15517-15522
    • Cohen, S.E.1    Lewis, C.A.2    Mooney, R.A.3    Kohanski, M.A.4    Collins, J.J.5    Landick, R.6
  • 6
    • 0027374650 scopus 로고
    • Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin
    • Chan CL, Landick R. Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin. J Mol Biol 1993; 233:25-42.
    • (1993) J Mol Biol , vol.233 , pp. 25-42
    • Chan, C.L.1    Landick, R.2
  • 7
    • 0019942479 scopus 로고
    • Effects of NusA protein on transcription termination in the tryptophan operon of Escherichia coli
    • Farnham PJ, Greenblatt J, Platt T. Effects of NusA protein on transcription termination in the tryptophan operon of Escherichia coli. Cell 1982; 29:945-51.
    • (1982) Cell , vol.29 , pp. 945-951
    • Farnham, P.J.1    Greenblatt, J.2    Platt, T.3
  • 8
    • 0019480456 scopus 로고
    • Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcription
    • Greenblatt J, Li J. Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcription. Cell 1981; 24:421-8.
    • (1981) Cell , vol.24 , pp. 421-428
    • Greenblatt, J.1    Li, J.2
  • 9
    • 0023660755 scopus 로고
    • Isolation and structural analysis of the Escherichia coli trp leader paused transcription complex
    • Landick R, Yanofsky C. Isolation and structural analysis of the Escherichia coli trp leader paused transcription complex. J Mol Biol 1987; 196:363-77.
    • (1987) J Mol Biol , vol.196 , pp. 363-377
    • Landick, R.1    Yanofsky, C.2
  • 10
    • 0026541433 scopus 로고
    • The NusA and NusG proteins of Escherichia coli increase the in vitro readthrough frequency of a transcriptional attenuator preceding the gene for the beta subunit of RNA polymerase
    • Linn T, Greenblatt J. The NusA and NusG proteins of Escherichia coli increase the in vitro readthrough frequency of a transcriptional attenuator preceding the gene for the beta subunit of RNA polymerase. J Biol Chem 1992; 267:1449-54.
    • (1992) J Biol Chem , vol.267 , pp. 1449-1454
    • Linn, T.1    Greenblatt, J.2
  • 11
    • 0030053898 scopus 로고    scopus 로고
    • Role of Escherichia coli RNA polymerase alpha subunit in modulation of pausing, termination and anti-termination by the transcription elongation factor NusA
    • Liu K, Zhang Y, Severinov K, Das A, Hanna MM. Role of Escherichia coli RNA polymerase alpha subunit in modulation of pausing, termination and anti-termination by the transcription elongation factor NusA. EMBO J 1996; 15:150-61.
    • (1996) EMBO J , vol.15 , pp. 150-161
    • Liu, K.1    Zhang, Y.2    Severinov, K.3    Das, A.4    Hanna, M.M.5
  • 12
    • 0023660679 scopus 로고
    • NusA protein of Escherichia coli is an efficient transcription termination factor for certain terminator sites
    • Schmidt MC, Chamberlin MJ. NusA protein of Escherichia coli is an efficient transcription termination factor for certain terminator sites. J Mol Biol 1987; 195:809-18.
    • (1987) J Mol Biol , vol.195 , pp. 809-818
    • Schmidt, M.C.1    Chamberlin, M.J.2
  • 13
    • 0015985734 scopus 로고
    • Genetic characterization of a bacterial locus involved in the activity of the N function of phage lambda
    • Friedman DI, Baron LS. Genetic characterization of a bacterial locus involved in the activity of the N function of phage lambda. Virology 1974; 58:141-8.
    • (1974) Virology , vol.58 , pp. 141-148
    • Friedman, D.I.1    Baron, L.S.2
  • 14
    • 0035997344 scopus 로고    scopus 로고
    • Error-prone repair DNA polymerases in prokaryotes and eukaryotes
    • Goodman MF. Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu Rev Biochem 2002; 71:17-50.
    • (2002) Annu Rev Biochem , vol.71 , pp. 17-50
    • Goodman, M.F.1
  • 15
    • 0037205001 scopus 로고    scopus 로고
    • Specialized DNA polymerases, cellular survival and the genesis of mutations
    • Friedberg EC, Wagner R, Radman M. Specialized DNA polymerases, cellular survival and the genesis of mutations. Science 2002; 296:1627-30.
    • (2002) Science , vol.296 , pp. 1627-1630
    • Friedberg, E.C.1    Wagner, R.2    Radman, M.3
  • 16
    • 85011939221 scopus 로고    scopus 로고
    • EcoSal-Escherichia coli and Salmonella: Cellular and molecular biology. EcoSal-Escherichia coli and Salmonella: Cellular and molecular biology
    • In: Böck A, Curtiss R, III, Kaper JB, Karp PD, Neidhardt FC, Nyström T, et al. (Eds.), ASM Press, Washington DC
    • Simmons LAJF, Cohen SE, Walker GC. The SOS Regulatory Network. In: Böck A, Curtiss R, III, Kaper JB, Karp PD, Neidhardt FC, Nyström T, et al. (Eds.). EcoSal-Escherichia coli and Salmonella: cellular and molecular biology. EcoSal-Escherichia coli and Salmonella: cellular and molecular biology http://www.ecosal.org: ASM Press, Washington DC 2008; 5:4.
    • (2008) The SOS Regulatory Network , vol.5 , pp. 4
    • Simmons, L.A.J.F.1    Cohen, S.E.2    Walker, G.C.3
  • 17
    • 31844456472 scopus 로고    scopus 로고
    • Replication fork reactivation downstream of a blocked nascent leading strand
    • Heller RC, Marians KJ. Replication fork reactivation downstream of a blocked nascent leading strand. Nature 2006; 439:557-62.
    • (2006) Nature , vol.439 , pp. 557-562
    • Heller, R.C.1    Marians, K.J.2
  • 19
    • 0014432520 scopus 로고
    • Discontinuities in the DNA synthesized in an excision-defective strain of Escherichia coli following ultraviolet irradiation
    • Rupp WD, Howard-Flanders P. Discontinuities in the DNA synthesized in an excision-defective strain of Escherichia coli following ultraviolet irradiation. J Mol Biol 1968; 31:291-304.
    • (1968) J Mol Biol , vol.31 , pp. 291-304
    • Rupp, W.D.1    Howard-Flanders, P.2
  • 20
    • 0014982055 scopus 로고
    • Usefulness of benzoylated naphthoylated DEAE-cellulose to distinguish and fractionate double-stranded DNA bearing different extents of single-stranded regions
    • Iyer VN, Rupp WD. Usefulness of benzoylated naphthoylated DEAE-cellulose to distinguish and fractionate double-stranded DNA bearing different extents of single-stranded regions. Biochim Biophys Acta 1971; 228:117.
    • (1971) Biochim Biophys Acta , vol.228 , pp. 117
    • Iyer, V.N.1    Rupp, W.D.2
  • 21
    • 0030478013 scopus 로고    scopus 로고
    • Template strand gap bypass is a general property of prokaryotic RNA polymerases: Implications for elongation mechanisms
    • Liu J, Doetsch PW. Template strand gap bypass is a general property of prokaryotic RNA polymerases: implications for elongation mechanisms. Biochemistry 1996; 35:14999-5008.
    • (1996) Biochemistry , vol.35 , pp. 14999-15008
    • Liu, J.1    Doetsch, P.W.2
  • 22
    • 0028837312 scopus 로고
    • The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced
    • Tennyson CN, Kalmut HJ, Worton RG. The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced. Nature Genetics 1995; 9:184-90.
    • (1995) Nature Genetics , vol.9 , pp. 184-190
    • Tennyson, C.N.1    Kalmut, H.J.2    Worton, R.G.3
  • 25
    • 75849120860 scopus 로고    scopus 로고
    • A DinB variant reveals diverse physiological consequences of incomplete TLS extension by a Y-family DNA polymerase
    • Jarosz DF, Cohen SE, Delaney JC, Essigmann JM, Walker GC. A DinB variant reveals diverse physiological consequences of incomplete TLS extension by a Y-family DNA polymerase. Proc Natl Acad Sci USA 2009; 106:21137-42.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 21137-21142
    • Jarosz, D.F.1    Cohen, S.E.2    Delaney, J.C.3    Essigmann, J.M.4    Walker, G.C.5
  • 26
    • 30544445218 scopus 로고    scopus 로고
    • A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates
    • Jarosz DF, Godoy VG, Delaney JC, Essigmann JM, Walker GC. A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates. Nature 2006; 439:225-8.
    • (2006) Nature , vol.439 , pp. 225-228
    • Jarosz, D.F.1    Godoy, V.G.2    Delaney, J.C.3    Essigmann, J.M.4    Walker, G.C.5
  • 27
    • 55549141867 scopus 로고    scopus 로고
    • Replication bypass of interstrand cross-link intermediates by Escherichia coli DNA polymerase IV
    • Kumari A, Minko IG, Harbut MB, Finkel SE, Goodman MF, Lloyd RS. Replication bypass of interstrand cross-link intermediates by Escherichia coli DNA polymerase IV. J Biol Chem 2008; 283: 27433-7.
    • (2008) J Biol Chem , vol.283 , pp. 27433-27437
    • Kumari, A.1    Minko, I.G.2    Harbut, M.B.3    Finkel, S.E.4    Goodman, M.F.5    Lloyd, R.S.6
  • 28
    • 55949136881 scopus 로고    scopus 로고
    • Replication bypass of the acrolein-mediated deoxyguanine DNA-peptide cross-links by DNA polymerases of the DinB family
    • Minko IG, Yamanaka K, Kozekov ID, Kozekova A, Indiani C, O'Donnell ME, et al. Replication bypass of the acrolein-mediated deoxyguanine DNA-peptide cross-links by DNA polymerases of the DinB family. Chem Res Toxicol 2008; 21:1983-90.
    • (2008) Chem Res Toxicol , vol.21 , pp. 1983-1990
    • Minko, I.G.1    Yamanaka, K.2    Kozekov, I.D.3    Kozekova, A.4    Indiani, C.5    O'Donnell, M.E.6
  • 29
    • 47249145530 scopus 로고    scopus 로고
    • 2-(1-carboxyethyl)- 2'-deoxyguanosine by DinB DNA polymerase in vitro and in vivo
    • 2-(1-carboxyethyl)- 2'-deoxyguanosine by DinB DNA polymerase in vitro and in vivo. Proc Natl Acad Sci USA 2008; 105:8679-84.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 8679-8684
    • Yuan, B.1    Cao, H.2    Jiang, Y.3    Hong, H.4    Wang, Y.5
  • 30
    • 0021184799 scopus 로고
    • Monoclonal antibodies specific for the alpha subunit of the Escherichia coli DNA polymerase III holoenzyme
    • Wu YH, Franden MA, Hawker JR Jr, McHenry CS. Monoclonal antibodies specific for the alpha subunit of the Escherichia coli DNA polymerase III holoenzyme. J Biol Chem 1984; 259:12117-22.
    • (1984) J Biol Chem , vol.259 , pp. 12117-12122
    • Wu, Y.H.1    Franden, M.A.2    Hawker Jr., J.R.3    McHenry, C.S.4
  • 31
    • 0034789619 scopus 로고    scopus 로고
    • Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli
    • Kim SR, Matsui K, Yamada M, Gruz P, Nohmi T. Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli. Mol Genet Genomics 2001; 266:207-15.
    • (2001) Mol Genet Genomics , vol.266 , pp. 207-215
    • Kim, S.R.1    Matsui, K.2    Yamada, M.3    Gruz, P.4    Nohmi, T.5
  • 32
    • 67749113270 scopus 로고    scopus 로고
    • Nucleotide excision repair is a predominant mechanism for processing nitrofurazone-induced DNA damage in Escherichia coli
    • Ona KR, Courcelle CT, Courcelle J. Nucleotide excision repair is a predominant mechanism for processing nitrofurazone-induced DNA damage in Escherichia coli. J Bacteriol 2009; 191:4959-65.
    • (2009) J Bacteriol , vol.191 , pp. 4959-4965
    • Ona, K.R.1    Courcelle, C.T.2    Courcelle, J.3
  • 33
    • 0024426244 scopus 로고
    • Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand
    • Mellon I, Hanawalt PC. Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand. Nature 1989; 342:95-8.
    • (1989) Nature , vol.342 , pp. 95-98
    • Mellon, I.1    Hanawalt, P.C.2
  • 34
    • 0021905437 scopus 로고
    • DNA repair in an active gene: Removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall
    • Bohr VA, Smith CA, Okumoto DS, Hanawalt PC. DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 1985; 40:359-69.
    • (1985) Cell , vol.40 , pp. 359-369
    • Bohr, V.A.1    Smith, C.A.2    Okumoto, D.S.3    Hanawalt, P.C.4
  • 35
    • 77957283462 scopus 로고    scopus 로고
    • Linking transcription with DNA repair, damage tolerance, and genome duplication
    • McGlynn P. Linking transcription with DNA repair, damage tolerance, and genome duplication. Proc Natl Acad Sci USA 2010; 107:15314-5.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 15314-15315
    • McGlynn, P.1
  • 36
    • 18144452679 scopus 로고    scopus 로고
    • Oxy radicals, lipid peroxidation and DNA damage
    • Marnett LJ. Oxy radicals, lipid peroxidation and DNA damage. Toxicology 2002; 181:219-22.
    • (2002) Toxicology , vol.181 , pp. 219-222
    • Marnett, L.J.1
  • 37
    • 0027905034 scopus 로고
    • Molecular mechanism of transcription-repair coupling
    • Selby CP, Sancar A. Molecular mechanism of transcription-repair coupling. Science 1993; 260:53-8.
    • (1993) Science , vol.260 , pp. 53-58
    • Selby, C.P.1    Sancar, A.2
  • 38
    • 0026354699 scopus 로고
    • Escherichia coli mfd mutant deficient in "mutation frequency decline" lacks strand-specific repair: In vitro complementation with purified coupling factor
    • Selby CP, Witkin EM, Sancar A. Escherichia coli mfd mutant deficient in "mutation frequency decline" lacks strand-specific repair: In vitro complementation with purified coupling factor. Proc Natl Acad Sci USA 1991; 88:11574-8.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 11574-11578
    • Selby, C.P.1    Witkin, E.M.2    Sancar, A.3
  • 39
    • 0037077154 scopus 로고    scopus 로고
    • E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation
    • Park JS, Marr MT, Roberts JW. E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation. Cell 2002; 109:757-67.
    • (2002) Cell , vol.109 , pp. 757-767
    • Park, J.S.1    Marr, M.T.2    Roberts, J.W.3
  • 40
    • 0016303298 scopus 로고
    • Slow excision repair in an mfd mutant of Escherichia coli B/r
    • George DL, Witkin EM. Slow excision repair in an mfd mutant of Escherichia coli B/r. Mol Gen Genet 1974; 133:283-91.
    • (1974) Mol Gen Genet , vol.133 , pp. 283-291
    • George, D.L.1    Witkin, E.M.2
  • 41
    • 77953006634 scopus 로고    scopus 로고
    • The mutation spectrum revealed by paired genome sequences from a lung cancer patient
    • Lee W, Jiang Z, Liu J, Haverty PM, Guan Y, Stinson J, et al. The mutation spectrum revealed by paired genome sequences from a lung cancer patient. Nature 2010; 465:473-7.
    • (2010) Nature , vol.465 , pp. 473-477
    • Lee, W.1    Jiang, Z.2    Liu, J.3    Haverty, P.M.4    Guan, Y.5    Stinson, J.6
  • 45
    • 0028106162 scopus 로고
    • Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template
    • Donahue BA, Yin S, Taylor JS, Reines D, Hanawalt PC. Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template. Proc Natl Acad Sci USA 1994; 91:8502-6.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 8502-8506
    • Donahue, B.A.1    Yin, S.2    Taylor, J.S.3    Reines, D.4    Hanawalt, P.C.5
  • 46
    • 0030804783 scopus 로고    scopus 로고
    • RNA polymerase II stalled at a thymine dimer: Footprint and effect on excision repair
    • Selby CP, Drapkin R, Reinberg D, Sancar A. RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair. Nucleic Acids Res 1997; 25:787-93.
    • (1997) Nucleic Acids Res , vol.25 , pp. 787-793
    • Selby, C.P.1    Drapkin, R.2    Reinberg, D.3    Sancar, A.4
  • 47
    • 0025610725 scopus 로고
    • Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro
    • Selby CP, Sancar A. Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro. J Biol Chem 1990; 265:21330-6.
    • (1990) J Biol Chem , vol.265 , pp. 21330-21336
    • Selby, C.P.1    Sancar, A.2
  • 48
    • 0011189690 scopus 로고
    • Isolation and characterization of conditional lethal mutants of Escherichia coli defective in transcription termination factor rho
    • Das A, Court D, Adhya S. Isolation and characterization of conditional lethal mutants of Escherichia coli defective in transcription termination factor rho. Proc Natl Acad Sci USA 1976; 73:1959-63.
    • (1976) Proc Natl Acad Sci USA , vol.73 , pp. 1959-1963
    • Das, A.1    Court, D.2    Adhya, S.3


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