In situ hybridization for specific fungal organisms in acute invasive fungal rhinosinusitis

American Journal of Clinical Pathology

Volumn 135, Issue 2, 2011, Pages 190-199

  Montone, Kathleen T ^a   LiVolsi, Virginia A ^a   Lanza, Donald C ^b   Kennedy, David W ^a   Palmer, James ^a   Chiu, Alexander G ^a   Feldman, Michael D ^a   Loevner, Laurie A ^a   Nachamkin, Irving ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b Sinus and Nasal Institute of Florida   (United States)

Author keywords

Acute invasive fungal rhinosinusitis; Aspergillus; Fusarium; In situ hybridization; Rhizopus; Ribosomal RNA

Indexed keywords

BIOTIN; RIBOSOME RNA; FUNGAL RNA;

ADULT; AGED; ARTICLE; ASPERGILLUS; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; FUNGAL SINUSITIS; FUNGUS IDENTIFICATION; FUSARIUM; HUMAN; HUMAN TISSUE; IN SITU HYBRIDIZATION; MALE; NONHUMAN; NUCLEIC ACID ANALYSIS; OLIGONUCLEOTIDE PROBE; PRIORITY JOURNAL; RHIZOPUS; SEQUENCE ANALYSIS; ASPERGILLOSIS; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MIDDLE AGED; MYCOSIS; RHINITIS; SINUSITIS;

ADULT; AGED; AGED, 80 AND OVER; ASPERGILLOSIS; ASPERGILLUS; FEMALE; FUSARIUM; HUMANS; IN SITU HYBRIDIZATION; MALE; MIDDLE AGED; MYCOSES; RHINITIS; RHIZOPUS; RNA, FUNGAL; RNA, RIBOSOMAL; SINUSITIS;

EID: 79952271334     PISSN: 00029173     EISSN: 19437722     Source Type: Journal    
DOI: 10.1309/AJCPQLYZBDF30HTM     Document Type: Article

References (34)

1. Chakrabarti A, Denning DW, Ferguson BJ, et al. Fungal rhinosinusitis: a categorization and definitional scheme addressing current controversies. Laryngoscope. 2009;119:1809-1818.
2. Chakrabarti A, Das A, Panda NK. Controversies surrounding the categorization of fungal sinusitis. Med Mycol. 2009;47(suppl 1):S299-S308.
3. deShazo RD, Chapin K, Swain RE. Fungal sinusitis. N Engl J Med. 1997;337:254-259. (Pubitemid 27310442)
4. Das A, Bal A, Chakrabarti A, et al. Spectrum of fungal rhinosinusitis: histopathologist's perspective. Histopathology. 2009;54:854-859.
5. Michael RC, Michael JS, Ashbee RH, et al. Mycological profile of fungal sinusitis: an audit of specimens over a 7-year period in a tertiary care hospital in Tamil Nadu. Indian J Pathol Microbiol. 2008;51:493-496.
6. Challa S, Uppin SG, Hanumanthu S, et al. Fungal rhinosinusitis: a clinicopathological study from South India [published online ahead of print January 28, 2010]. Eur Arch Otorhinolaryngol. 2010;267:1239-1245. doi:10.1007/s00405-010-1202-6.
7. Derber C, Elam K, Bearman G. Invasive sinonasal disease due to dematiaceous fungi in immunocompromised individuals: case report and review of the literature [published online ahead of print June 29, 2010]. Int J Infect Dis. 2010;14(suppl 3):e329-e332. doi:10.1016/j.ijid.2010.04.003.
8. Campo M, Lewis RE, Kontoyiannis DP. Invasive fusariosis in patients with hematologic malignancies at a cancer center: 1998-2009. J Infect. 2010;60:331-337.
9. Montone KT, LiVolsi VA, Feldman MD, et al. Fungal rhinosinusitis: a retrospective review of 397 patients at a single university medical center. Mod Pathol. 2010;23(suppl 1):1242a.
10. Lass-Flörl C, Mayr A, Perkhofer S, et al. Activities of antifungal agents against yeasts and filamentous fungi: assessment according to the methodology of the European Committee on Antimicrobial Susceptibility Testing. Antimicrob Agents Chemother. 2008;52:3637-3641.
11. Olsen GJ, Woese CR. Ribosomal RNA: a key to phylogeny. FASEB J. 1993;7:113-123. (Pubitemid 23034021)
12. Olsen GJ, Woese CR, Overbeek R. The winds of (evolutionary) change: breathing new life into microbiology. J Bacteriol. 1994;176:1-6. (Pubitemid 24014915)
13. Lipski A, Friedrich U, Altendorf K. Applications of rRNA targeted oligonucleotide probes in biotechnology. Appl Microbiol Biotechnol. 2001;56:40-57. (Pubitemid 32661538)
14. Montone KT. In situ hybridization for ribosomal RNA sequences: a rapid sensitive method for diagnosis of infectious pathogens in anatomic pathology substrates. Acta Histochem Cytochem. 1994;27:601-606.
15. Montone KT, Litzky LA. Rapid method for detection of Aspergillus 5S ribosomal RNA using a genus-specific oligonucleotide probe. Am J Clin Pathol. 1995;103:48-51.
16. Hayashi Y, Watanabe J, Nakata K, et al. A novel diagnostic method of Pneumocystis carinii: in situ hybridization of ribosomal ribonucleic acid with biotinylated oligonucleotide probes. Lab Invest. 1990;63:576-580. (Pubitemid 20368737)
17. Kobayashi M, Urata T, Ikezoe T, et al. Simple detection of the 5S ribosomal RNA of Pneumocystis carinii using in situ hybridization. J Clin Pathol. 1996;49:712-716. (Pubitemid 26297694)
18. Hayden RT, Qian X, Procop GW, et al. In situ hybridization for the identification of filamentous fungi in tissue section. Diagn Mol Pathol. 2002;11:119-126. (Pubitemid 34538805)
19. Hayden RT, Isotalo PA, Parrett T, et al. In situ hybridization for the differentiation of Aspergillus, Fusarium, and Pseudallescheria species in tissue section. Diagn Mol Pathol. 2003;12:21-26. (Pubitemid 36255266)
20. Park CS, Kim J, Montone KT. Detection of Aspergillus ribosomal RNA using biotinylated oligonucleotide probes. Diagn Mol Pathol. 1997;6:255-260. (Pubitemid 28047545)
21. Ren C, Huang L, Bouchara JP, et al. Identification of medically important molds by an oligonucleotide array. J Clin Microbiol. 2005;43:4360-4368.
22. Bialek R, Konrad F, Kern J, et al. PCR based identification and discrimination of agents of mucormycosis and aspergillosis in paraffin wax embedded tissue. J Clin Pathol. 2005;58:1180-1184. (Pubitemid 41566463)
23. Rickerts V, Mousset S, Lambrecht E, et al. Comparison of histopathological analysis, culture, and polymerase chain reaction assays to detect invasive mold infections from biopsy specimens. Clin Infect Dis. 2007;44:1078-1083. (Pubitemid 46580276)
24. Masako M, Yanagihara M, Udagawa S. Identification of Curvularia spp based on the rRNA gene D1/D2 domain 1-541. Direct sequence submission to Genebank database. Published only in database, 2007.
25. Montone KT. Differentiation of Fusarium sp from Aspergillus sp by colorimetric in situ hybridization in formalin-fixed, paraffin-embedded tissue sections utilizing dual fluorogeniclabeled LNA probes. Am J Clin Pathol. 2009;132:866-870.
26. Iezzoni JC, Kang JH, Montone KT, et al. Colorimetric detection of herpes simplex virus by DNA in situ sandwich hybridization: a rapid, formamide-free, random oligomerenhanced method. Nucleic Acids Res. 1992;20:1149-1150.
27. Park CS, Manahan LJ, Brigati DJ. Automated molecular pathology: one hour in situ DNA hybridization. J Histotechnol. 1991;14:219-229.
28. Taxy JB, El-Zayaty S, Langerman A. Acute fungal sinusitis: natural history and the role of frozen section. Am J Clin Pathol. 2009;132:86-93.
29. Süslü AE, Oǧretmenoǧlu O, Süslü N, et al. Acute invasive fungal rhinosinusitis: our experience with 19 patients. Eur Arch Otorhinolaryngol. 2009;266:77-82.
30. Ghadiali MT, Deckard NA, Farooq U, et al. Frozen-section biopsy analysis for acute invasive fungal rhinosinusitis. Otolaryngol Head Neck Surg. 2007;136:714-719. (Pubitemid 46660242)
31. Gillespie MB, O'Malley BW Jr, Francis HW. An approach to fulminant invasive fungal rhinosinusitis in the immunocompromised host. Arch Otolaryngol Head Neck Surg. 1998;124:520-526. (Pubitemid 28222340)
32. Sangoi AR, Rogers WM, Longacre TA, et al. Challenges and pitfalls of morphologic identification of fungal infections in histologic and cytologic specimens. Am J Clin Pathol. 2009;131:364-375.
33. Shibata Y, Fujita S, Takahashi H, et al. Assessment of decalcifying protocols for detection of specific RNA by non-radioactive in situ hybridization in calcified tissues. Histochem Cell Biol. 2000;113:153-159. (Pubitemid 30196526)
34. Arber JM, Weiss LM, Chang KL, et al. The effect of decalcification on in situ hybridization. Mod Pathol. 1997;10:1009-1014. (Pubitemid 27471121)