Multilocus sequence typing reveals a novel subspeciation of Lactobacillus delbrueckii

Microbiology

Volumn 157, Issue 3, 2011, Pages 727-738

  Tanigawa, Kana ^a   Watanabe, Koichi ^a  

^a YAKULT CENTRAL INSTITUTE FOR MICROBIOLOGICAL RESEARCH   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; DISCRIMINANT VALIDITY; FUSA GENE; GENE SEQUENCE; GYRB GENE; HOUSEKEEPING GENE; HSP60 GENE; ILES GENE; LACTOBACILLUS DELBRUECKII; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; PYRG GENE; RECA GENE; RECG GENE; UNINDEXED SEQUENCE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; GENOTYPE; LACTOBACILLUS DELBRUECKII; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; PHENOTYPE; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

LACTOBACILLUS DELBRUECKII;

EID: 79952269117     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.043240-0     Document Type: Article

References (24)

1. Cai, H., Rodríguez, B. T., Zhang, W., Broadbent, J. R. & Steele, J. L. (2007). Genotypic and phenotypic characterization of Lactobacillus casei strains isolated from different ecological niches suggests frequent recombination and niche specificity. Microbiology 153, 2655-2665. (Pubitemid 47262055)
2. Chao, S.-H., Tomii, Y., Watanabe, K. & Tsai, Y.-C. (2008). Diversity of lactic acid bacteria in fermented brines used to make stinky tofu. Int J Food Microbiol 123, 134-141.
3. de las Rivas, B., Marcobal, A. & Muñoz, R. (2006). Development of a multilocus sequence typing method for analysis of Lactobacillus plantarum strains. Microbiology 152, 85-93.
4. Dellaglio, F., Felis, G. E., Castioni, A., Torriani, S. & Germond, J. E. (2005). Lactobacillus delbrueckii subsp. indicus subsp. nov., isolated from Indian dairy products. Int J Syst Evol Microbiol 55, 401-404. (Pubitemid 40185520)
5. Diancourt, L., Passet, V., Chervaux, C., Garault, P., Smokvina, T. & Brisse, S. (2007). Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination. Appl Environ Microbiol 73, 6601-6611. (Pubitemid 47623720)
6. Gatti, M., Fornasari, M. E. & Neviani, E. (2001). Differentiation of Lactobacillus delbrueckii subsp. bulgaricus and Lactobacillus delbrueckii subsp. lactis by SDS-PAGE of cell-wall proteins. Lett Appl Microbiol 32, 352-356.
7. Germond, J. E., Lapierre, L., Delley, M., Mollet, B., Felis, G. E. & Dellaglio, F. (2003). Evolution of the bacterial species Lactobacillus delbrueckii: a partial genomic study with reflections on prokaryotic species concept. Mol Biol Evol 20, 93-104. (Pubitemid 36082849)
8. Giraffa, G., Lazzi, C., Gatti, M., Rossetti, L., Mora, D. & Neviani, E. (2003). Molecular typing of Lactobacillus delbrueckii of dairy origin by PCR-RFLP of protein-coding genes. Int J Food Microbiol 82, 163-172. (Pubitemid 36144020)
9. Giraffa, G., Andrighetto, C., Antonello, C., Gatti, M., Lazzi, C., Marcazzan, G., Lombardi, A. & Neviani, E. (2004). Genotypic and phenotypic diversity of Lactobacillus delbrueckii subsp. lactis strains of dairy origin. Int J Food Microbiol 91, 129-139. (Pubitemid 38230259)
10. Librado, P. & Rozas, J. (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451-1452.
11. Maiden, M. C., Bygraves, J. A., Feil, E., Morelli, G., Russell, J. E., Urwin, R., Zhang, Q., Zhou, J., Zurth, K. & other authors (1998). Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95, 3140-3145. (Pubitemid 28135868)
12. Miteva, V., Boudakov, I., Ivanova-Stoyancheva, G., Marinova, B., Mitev, V. & Mengaud, J. (2001). Differentiation of Lactobacillus delbrueckii subspecies by ribotyping and amplified ribosomal DNA restriction analysis (ARDRA). J Appl Microbiol 90, 909-918. (Pubitemid 32500238)
13. Picozzi, C., Bonacina, G., Vigentini, I. & Foschino, R. (2010). Genetic diversity in Italian Lactobacillus sanfranciscensis strains assessed by multilocus sequence typing and pulsed-field gel electrophoresis analyses. Microbiology 156, 2035-2045.
14. Savelkoul, P. H. M., Aarts, H. J. M., de Haas, J., Dijkshoorn, L., Duim, B., Otsen, M., Rademaker, J. L., Schouls, L. & Lenstra, J. A. (1999). Amplified-fragment length polymorphism analysis: the state of an art. J Clin Microbiol 37, 3083-3091. (Pubitemid 29455186)
15. Sneath, P. H. A. & Sokal, R. R. (1973). Numerical Taxonomy. San Francisco, CA: W. H. Freeman & Company.
16. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155.
17. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
18. Tanigawa, K., Kawabata, H. & Watanabe, K. (2010). Identification and typing of Lactococcus lactis by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl Environ Microbiol 76, 4055-4062.
19. Tindall, B. J., Rosselló-Móra, R., Busse, H. J., Ludwig, W. & Kämpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249-266.
20. Torriani, S., Zapparoli, G. & Dellaglio, F. (1999). Use of PCR-based methods for rapid differentiation of Lactobacillus delbrueckii subsp. bulgaricus and L. delbrueckii subsp. lactis. Appl Environ Microbiol 65, 4351-4356.
21. Vos, P., Hogers, R., Bleeker, M., Reijans, M., van de Lee, T., Hornes, M., Frijters, A., Pot, J. P., Peleman, J. & other authors (1995). AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23, 4407-4414.
22. Watanabe, K., Fujimoto, J., Sasamoto, M., Dugersuren, J., Tumursuh, T. & Demberel, S. (2008). Diversity of lactic acid bacteria and yeasts in Airag and Tarag, traditional fermented milk products of Mongolia. World J Microbiol Biotechnol 24, 1313-1325.
23. Watanabe, K.,Fujimoto, J., Tomii, Y.,Sasamoto, M.,Makino, H.,Kudo, Y. & Okada, S. (2009). Lactobacillus kisonensis sp. nov., Lactobacillus otakiensis sp. nov., Lactobacillus rapi sp. nov. and Lactobacillus sunkii sp. nov., heterofermentative species isolated from sunki, a traditional Japanese pickle. Int J Syst Evol Microbiol 59, 754-760.
24. Weiss, N., Schillinger, U. & Kandler, O. (1983). Lactobacillus lactis, Lactobacillus leichmannii and Lactobacillus bulgaricus, subjective synonyms of Lactobacillus delbrueckii, and description of Lactobacillus delbrueckii subsp. lactis comb. nov. and Lactobacillus delbrueckii subsp. bulgaricus comb. nov. Syst Appl Microbiol 4, 552-557. (Pubitemid 14187753)