-
1
-
-
24644437810
-
-
Noller, H. F., 2005. Science, 309:1508–1514.
-
(2005)
Science
, vol.309
, pp. 1508-1514
-
-
Noller, H.F.1
-
2
-
-
24744440117
-
-
Costa, F. F., 2005. Gene, 357:83–94.
-
(2005)
Gene
, vol.357
, pp. 83-94
-
-
Costa, F.F.1
-
3
-
-
24944565971
-
-
Szymanski, M., Barciszewska, M. Z., Erdmann, V. A., and Barciszewski, J., 2005. Biochim Biophys Acta, 1756:65–75.
-
(2005)
Biochim Biophys Acta
, vol.1756
, pp. 65-75
-
-
Szymanski, M.1
Barciszewska, M.Z.2
Erdmann, V.A.3
Barciszewski, J.4
-
4
-
-
2542475378
-
-
Xiao, Y., Huang, Y., Li, M., Xu, R., and Xiao, S., 2003. Phys Rev E Stat Nonlin Soft Matter Phys, 68:061913
-
(2003)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.68
, pp. 61913
-
-
Xiao, Y.1
Huang, Y.2
Li, M.3
Xu, R.4
Xiao, S.5
-
6
-
-
0037418839
-
-
Brennecke, J., Hipfner, D. R., Stark, A., Russell, R. B., and Cohen, S. M., 2003. Cell, 113:25–36.
-
(2003)
Cell
, vol.113
, pp. 25-36
-
-
Brennecke, J.1
Hipfner, D.R.2
Stark, A.3
Russell, R.B.4
Cohen, S.M.5
-
7
-
-
0032545933
-
-
Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., and Mello, C. C., 1998. Nature, 391:806–811.
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
10
-
-
0033954256
-
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E., 2000. Nucleic Acids Res, 28:235–242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
11
-
-
0026742978
-
-
Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S. H., Srinivasan, A. R., and Schneider, B., 1992. Biophys J, 63:751–759.
-
(1992)
Biophys J
, vol.63
, pp. 751-759
-
-
Berman, H.M.1
Olson, W.K.2
Beveridge, D.L.3
Westbrook, J.4
Gelbin, A.5
Demeny, T.6
Hsieh, S.H.7
Srinivasan, A.R.8
Schneider, B.9
-
12
-
-
13444267841
-
-
Liu, C., Bai, B., Skogerbo, G., Cai, L., Deng, W., Zhang, Y., Bu, D., Zhao, Y., and Chen, R., 2005. Nucleic Acids Res, 33:D112–D115.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D112-D115
-
-
Liu, C.1
Bai, B.2
Skogerbo, G.3
Cai, L.4
Deng, W.5
Zhang, Y.6
Bu, D.7
Zhao, Y.8
Chen, R.9
-
13
-
-
8444229753
-
-
Schroeder, R., Barta, A., and Semrad, K., 2004. Nat Rev Mol Cell Biol, 5:908–919.
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 908-919
-
-
Schroeder, R.1
Barta, A.2
Semrad, K.3
-
15
-
-
44349144363
-
-
Qu, X., Smith, G. J., Lee, K. T., Sosnick, T. R., Pan, T., and Scherer, N. F., 2008. Proc Natl Acad Sci USA, 105:6602–6607.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 6602-6607
-
-
Qu, X.1
Smith, G.J.2
Lee, K.T.3
Sosnick, T.R.4
Pan, T.5
Scherer, N.F.6
-
16
-
-
70350003703
-
-
Yoon, J., Jang, S., Lee, K., and Shin, S., 2009. J Biomol Struct Dyn, 27:259–269.
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 259-269
-
-
Yoon, J.1
Jang, S.2
Lee, K.3
Shin, S.4
-
17
-
-
70349921920
-
-
Ilda, D., Giovanni, C., and Alessandro, D., 2009. J Biomol Struct Dyn, 27:307–317.
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 307-317
-
-
Ilda, D.1
Giovanni, C.2
Alessandro, D.3
-
21
-
-
67249143457
-
-
Chang, L. K., Zhao, J. H., Liu, H. L., Liu, K. T., Chen, J. T., Tsai, W. B., and Ho, Y., 2009. J Biomol Struct Dyn, 26:731–740.
-
(2009)
J Biomol Struct Dyn
, vol.26
, pp. 731-740
-
-
Chang, L.K.1
Zhao, J.H.2
Liu, H.L.3
Liu, K.T.4
Chen, J.T.5
Tsai, W.B.6
Ho, Y.7
-
22
-
-
60849085704
-
-
Zhao, J. H., Liu, H. L., Liu, Y. F., Lin, H. Y., Fang, H. W., Ho, Y., and Tsai, W. B., 2009. J Biomol Struct Dyn, 26:481–490.
-
(2009)
J Biomol Struct Dyn
, vol.26
, pp. 481-490
-
-
Zhao, J.H.1
Liu, H.L.2
Liu, Y.F.3
Lin, H.Y.4
Fang, H.W.5
Ho, Y.6
Tsai, W.B.7
-
23
-
-
66949159146
-
-
Fang, P. S., Zhao, J. H., Liu, H. L., Liu, K. T., Chen, J. T., Lin, H. Y., Huang, C. H., and Fang, H. W., 2009. J Biomol Struct Dyn, 26:549–559.
-
(2009)
J Biomol Struct Dyn
, vol.26
, pp. 549-559
-
-
Fang, P.S.1
Zhao, J.H.2
Liu, H.L.3
Liu, K.T.4
Chen, J.T.5
Lin, H.Y.6
Huang, C.H.7
Fang, H.W.8
-
24
-
-
60849086469
-
-
Sunilkumar, P. N., Nair, D. G., Sadasivan, C., and Haridas, M., 2009. J Biomol Struct Dyn, 26:491–496.
-
(2009)
J Biomol Struct Dyn
, vol.26
, pp. 491-496
-
-
Sunilkumar, P.N.1
Nair, D.G.2
Sadasivan, C.3
Haridas, M.4
-
25
-
-
67650439243
-
-
Bairagya, H. R., Mukhopadhyay, B. P., and Sekar, K., 2009. J Biomol Struct Dyn, 27:149–158.
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 149-158
-
-
Bairagya, H.R.1
Mukhopadhyay, B.P.2
Sekar, K.3
-
27
-
-
66149106241
-
-
Patargias, G., Martay, H., and Fischer, W. B., 2009. J Biomol Struct Dyn, 27:1–12.
-
(2009)
J Biomol Struct Dyn
, vol.27
, pp. 1-12
-
-
Patargias, G.1
Martay, H.2
Fischer, W.B.3
-
32
-
-
76849114370
-
-
Yu, Y., Wang, Y., He, J., Liu, Y., Li, H., Zhang, H., and Song, Y., 2010. J Biomol Struct Dyn, 27:641–649.
-
(2010)
J Biomol Struct Dyn
, vol.27
, pp. 641-649
-
-
Yu, Y.1
Wang, Y.2
He, J.3
Liu, Y.4
Li, H.5
Zhang, H.6
Song, Y.7
-
34
-
-
77956537066
-
-
Aman, M. J., Karauzum, H., Bowden, M. G., and Nguyen, T. L., 2010. J Biomol Struct Dyn, 28:1–12.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 1-12
-
-
Aman, M.J.1
Karauzum, H.2
Bowden, M.G.3
Nguyen, T.L.4
-
35
-
-
77956544501
-
-
Chang, L. K., Zhao, J. H., Liu, H. L., Wu, J. W., Chuang, C. K., Liu, K. T., Chen, J. T., Tsai, W. B., and Ho, Y., 2010. J Biomol Struct Dyn, 28:39–50.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 39-50
-
-
Chang, L.K.1
Zhao, J.H.2
Liu, H.L.3
Wu, J.W.4
Chuang, C.K.5
Liu, K.T.6
Chen, J.T.7
Tsai, W.B.8
Ho, Y.9
-
36
-
-
77956533669
-
-
Yuan, Y., Knaggs, M. H., Poole, L. B., Fetrow, J. S., and Salsbury, F. R., Jr. 2010. J Biomol Struct Dyn, 28:51–70.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 51-70
-
-
Yuan, Y.1
Knaggs, M.H.2
Poole, L.B.3
Fetrow, J.S.4
Salsbury, F.R.5
-
37
-
-
77956516916
-
-
Koshy, C., Parthiban, M., and Sowdhamini, R., 2010. J Biomol Struct Dyn, 28:71–83.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 71-83
-
-
Koshy, C.1
Parthiban, M.2
Sowdhamini, R.3
-
38
-
-
77957302449
-
-
Tao, Y., Rao, Z. H., and Liu, S. Q., 2010. J Biomol Struct Dyn, 28:143–157.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 143-157
-
-
Tao, Y.1
Rao, Z.H.2
Liu, S.Q.3
-
39
-
-
77957315736
-
-
Varughese, J. F., Chalovich, J. M., and Li, Y., 2010. J Biomol Struct Dyn, 28:159–173.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 159-173
-
-
Varughese, J.F.1
Chalovich, J.M.2
Li, Y.3
-
40
-
-
78649874973
-
-
Cao, Z., Liu, L., and Wang, J., 2010. J Biomol Struct Dyn, 28:343–353.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 343-353
-
-
Cao, Z.1
Liu, L.2
Wang, J.3
-
42
-
-
78649849342
-
-
Wiesner, J., Kriz, Z., Kuca, K., Jun, D., and Koca, J., 2010. J Biomol Struct Dyn, 28:393–403.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 393-403
-
-
Wiesner, J.1
Kriz, Z.2
Kuca, K.3
Jun, D.4
Koca, J.5
-
43
-
-
76749106664
-
-
da Cunha, E. E., Barbosa, E. F., Oliveira, A. A., and Ramalho, T. C., 2010. J Biomol Struct Dyn, 27:619–625.
-
(2010)
J Biomol Struct Dyn
, vol.27
, pp. 619-625
-
-
da Cunha, E.E.1
Barbosa, E.F.2
Oliveira, A.A.3
Ramalho, T.C.4
-
45
-
-
78649897365
-
-
Bhargavi, K., Kalyan Chaitanya, P., Ramasree, D., Vasavi, M., Murthy, D. K., and Uma, V., 2010. J Biomol Struct Dyn, 28:379–391.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 379-391
-
-
Bhargavi, K.1
Kalyan Chaitanya, P.2
Ramasree, D.3
Vasavi, M.4
Murthy, D.K.5
Uma, V.6
-
46
-
-
78649862202
-
-
Gong, Z., Zhao, Y., and Xiao, Y., 2010. J Biomol Struct Dyn, 28:431–441.
-
(2010)
J Biomol Struct Dyn
, vol.28
, pp. 431-441
-
-
Gong, Z.1
Zhao, Y.2
Xiao, Y.3
-
47
-
-
44149101971
-
-
Ding, F., Sharma, S., Chalasani, P., Demidov, V. V., Broude, N. E., and Dokholyan, N. V., 2008. RNA, 14:1164–1173.
-
(2008)
RNA
, vol.14
, pp. 1164-1173
-
-
Ding, F.1
Sharma, S.2
Chalasani, P.3
Demidov, V.V.4
Broude, N.E.5
Dokholyan, N.V.6
-
48
-
-
34147104014
-
-
Shapiro, B. A., Yingling, Y. G., Kasprzak, W., and Bindewald, E., 2007. Curr Opin Struct Biol, 17:157–165.
-
(2007)
Curr Opin Struct Biol
, vol.17
, pp. 157-165
-
-
Shapiro, B.A.1
Yingling, Y.G.2
Kasprzak, W.3
Bindewald, E.4
-
51
-
-
0033549817
-
-
Batey, R. T., Rambo, R. P., and Doudna, J. A., 1999. Angew Chem Int Ed Engl, 38:2326–2343.
-
(1999)
Angew Chem Int Ed Engl
, vol.38
, pp. 2326-2343
-
-
Batey, R.T.1
Rambo, R.P.2
Doudna, J.A.3
-
56
-
-
43749124906
-
-
Martinez, H. M., Maizel, J. V., Jr and Shapiro, B. A., 2008. J Biomol Struct Dyn, 25:669–683.
-
(2008)
J Biomol Struct Dyn
, vol.25
, pp. 669-683
-
-
Martinez, H.M.1
Maizel, J.V.2
Shapiro, B.A.3
-
60
-
-
0033591465
-
-
Mathews, D. H., Sabina, J., Zuker, M., and Turner, D. H., 1999. J Mol Biol, 288:911–940.
-
(1999)
J Mol Biol
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
65
-
-
32544440797
-
-
Steffen, P., Voss, B., Rehmsmeier, M., Reeder, J., and Giegerich, R., 2006. Bioinformatics, 22:500–503.
-
(2006)
Bioinformatics
, vol.22
, pp. 500-503
-
-
Steffen, P.1
Voss, B.2
Rehmsmeier, M.3
Reeder, J.4
Giegerich, R.5
-
66
-
-
4544339512
-
-
Giegerich, R., Voss, B., and Rehmsmeier, M., 2004. Nucleic Acids Res, 32:4843–4851.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4843-4851
-
-
Giegerich, R.1
Voss, B.2
Rehmsmeier, M.3
-
67
-
-
51749093577
-
-
Chen, X., He, S. M., Bu, D., Zhang, F., Wang, Z., Chen, R., and Gao, W., 2008. Bioinformatics, 24:1994–2001.
-
(2008)
Bioinformatics
, vol.24
, pp. 1994-2001
-
-
Chen, X.1
He, S.M.2
Bu, D.3
Zhang, F.4
Wang, Z.5
Chen, R.6
Gao, W.7
-
68
-
-
34547564982
-
-
Reeder, J., Steffen, P., and Giegerich, R., 2007. Nucleic Acids Res, 35:W320–324.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W320-W324
-
-
Reeder, J.1
Steffen, P.2
Giegerich, R.3
-
71
-
-
85023938525
-
-
Case, D. A., Darden, T. A., Cheatham, T. E., Simmerling, C. L., Wang, J., Duke, R. E., Luo, R., Merz, K. M., Pearlman, D. A., Crowley, M., Walker, R. C., Zhang, W., Wang, B., Hayik, S., Roitberg, A., Seabra, G., Wong, K. F., Paesani, F., Wu, X., Brozell, S., Tsui, V., Gohlke, H., Yang, L., Tan, C., Mongan, J., Hornak, V., Cui, G., Beroza, P., Mathews, D. H., Schafmeister, C., Ross, W. S., and Kollman, P. A., 2006.
-
(2006)
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Merz, K.M.8
Pearlman, D.A.9
Crowley, M.10
Walker, R.C.11
Zhang, W.12
Wang, B.13
Hayik, S.14
Roitberg, A.15
Seabra, G.16
Wong, K.F.17
Paesani, F.18
Wu, X.19
Brozell, S.20
Tsui, V.21
Gohlke, H.22
Yang, L.23
Tan, C.24
Mongan, J.25
Hornak, V.26
Cui, G.27
Beroza, P.28
Mathews, D.H.29
Schafmeister, C.30
Ross, W.S.31
Kollman, P.A.32
more..
-
74
-
-
0029878720
-
-
27–38
-
Humphrey, W., Dalke, A., and Schulten, K., 1996. J Mol Graph, 14:33–38. 27–38
-
(1996)
J Mol Graph
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
75
-
-
0035906639
-
-
Gendron, P., Lemieux, S., and Major, F., 2001. J Mol Biol, 308:919–936.
-
(2001)
J Mol Biol
, vol.308
, pp. 919-936
-
-
Gendron, P.1
Lemieux, S.2
Major, F.3
-
77
-
-
70349149051
-
-
Parisien, M., Cruz, J. A., Westhof, E., and Major, F., 2009. RNA, 15:1875–1885.
-
(2009)
RNA
, vol.15
, pp. 1875-1885
-
-
Parisien, M.1
Cruz, J.A.2
Westhof, E.3
Major, F.4
-
78
-
-
58749105663
-
-
Draper, D. E., 2008. Biophys J, 95:5489–5495.
-
(2008)
Biophys J
, vol.95
, pp. 5489-5495
-
-
Draper, D.E.1
|